FFCP PHASE1:Hg19::chr3:197005150..197005154,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:197005150..197005154,-|id=chr3:197005150..197005154,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002605;1.74e-16;3!CL:0000128;1.38e-07;7!CL:0000126;1.38e-07;7!CL:0000127;1.38e-07;7!CL:0000243;9.97e-07;15!CL:0000125;9.97e-07;15|ontology_enrichment_celltype_v019_2=CL:0002605,1.61e-16,3;CL:0000128,1.33e-07,7;CL:0000126,1.33e-07,7;CL:0000127,1.33e-07,7;CL:0002453,1.33e-07,7;CL:0000243,9.21e-07,15;CL:0000125,9.21e-07,15;CL:0000030,9.21e-07,15;CL:0000339,9.21e-07,15|ontology_enrichment_development_v019=UBERON:0005425;1.93e-13;1!CL:0000339;9.97e-07;15|ontology_enrichment_disease=DOID:14566!3.74e-10!239;DOID:162!7.02e-10!235;DOID:0050687!3.53e-08!143;DOID:305!4.91e-08!106;DOID:7!9.18e-07!39|ontology_enrichment_disease_v019=DOID:1799;1.93e-13;1!DOID:10165;1.93e-13;1!DOID:1798;1.93e-13;1|ontology_enrichment_disease_v019_2=DOID:1799,2.32e-13,1;DOID:10165,2.32e-13,1;DOID:1798,2.32e-13,1|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0000941;1.93e-13;1!UBERON:0001785;1.93e-13;1!UBERON:0002464;1.93e-13;1!UBERON:0004904;1.93e-13;1!UBERON:0002426;1.93e-13;1!UBERON:0003831;1.93e-13;1!UBERON:0003898;1.93e-13;1!UBERON:0004830;1.93e-13;1!UBERON:0001021;1.93e-13;1!UBERON:0003830;1.93e-13;1!UBERON:0005175;1.93e-13;1!UBERON:0001774;1.93e-13;1!UBERON:0001103;1.93e-13;1!UBERON:0002038;5.37e-13;1!UBERON:0009661;5.37e-13;1!UBERON:0002950;5.37e-13;1!UBERON:0001891;5.37e-13;1!UBERON:0003714;2.35e-07;2!UBERON:0005162;2.35e-07;2!UBERON:0000122;2.35e-07;2!UBERON:0005090;2.35e-07;2!UBERON:0001630;2.35e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0000941,1.61e-13,1;UBERON:0001785,1.61e-13,1;UBERON:0002464,1.61e-13,1;UBERON:0004904,1.61e-13,1;UBERON:0001021,1.61e-13,1;UBERON:0003902,1.61e-13,1;UBERON:0005425,1.61e-13,1;UBERON:0002426,2.06e-13,1;UBERON:0003831,2.06e-13,1;UBERON:0003898,2.06e-13,1;UBERON:0004830,2.06e-13,1;UBERON:0003830,2.06e-13,1;UBERON:0005175,2.06e-13,1;UBERON:0001774,2.06e-13,1;UBERON:0001103,2.06e-13,1;UBERON:0010084,2.06e-13,1;UBERON:0002038,6.82e-13,1;UBERON:0009661,6.82e-13,1;UBERON:0002950,6.82e-13,1;UBERON:0001891,6.82e-13,1;UBERON:0009616,6.82e-13,1;UBERON:0010286,6.82e-13,1;UBERON:0003714,2.15e-07,2;UBERON:0005162,2.15e-07,2;UBERON:0000122,2.15e-07,2;UBERON:0005090,2.43e-07,2;UBERON:0001630,2.43e-07,2;UBERON:0001016,2.53e-07,89|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,1.14494394852423,1.77936752594749,0.627713197974014,0.152826811495903,0.246301768349837,0.314843125254717,0,0,0,0,0,0,0.309868802321207,0,0,0,0,0,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,0,0,0.263384084775077,0,0.786021525498329,0,0.668745981562712,0,0,0,0.111410456885174,0,0.221533894583621,0,0,0.260118695119756,0.164437904603676,0,0,0.14828656316206,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0.661743720148475,0.665188192387692,0.351339142772504,0.0654895377488563,0,0,0,0.174129737299267,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0.775250277507987,0,0,0,0,0,0,0,0.357198913136319,0,0.337834441449967,0,0,0.183201743930407,0,0,0,0,0,0.397227542439656,0.286836620748814,0.354668382198357,0,0,0,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0.352303495931295,0.161872944368132,0.280901613404497,0.408308342509787,0,0,0,0.247266929278557,0,0,0.336672227908132,0.250237039743928,0,0,0,0,0,0.358779271377724,0.213557388818567,0,0,0.103052529238439,0.515281080091258,0,0.337552664482532,0.0974370051611986,0.252433774244115,0,0,0.710019185033229,0,0.169560592310488,0.193260853163297,0.272746120590835,0.860413786167011,0.121973706129595,0,0,0,0,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0.590789906681404,0,0,0,0.109750285408626,0,0.100528972411631,0,0,0,0,0.231860809950154,0,0,0.462985512576611,0.380508304469197,0,0,0.492434012174795,0.468008530278475,0,0,0,0,0,0,0,0,0,0.414656231081544,0,0,0.126995788584338,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0.904318131178758,0,0.399891964728228,0,0,0,0,0,0,0.289562613335158,0.205476322550383,0,0,0.197030760201927,0.215627574859517,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0.415941723061614,0.356857977594324,0.315404830067869,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0.154209693802656,0,0,0.519254429183621,0,0.362578348774867,0.200506470303285,0.184161977871793,0.114814448164607,0.182091168006717,0.393373244878272,0.451199612907412,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0.183138929636687,0.495056999523528,0,0,0,0.096670718292122,0.616194468458578,0,0,0.214840489736547,0.580066775656914,0.170453254832202,0.089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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:197005150..197005154,- | |||
|id=chr3:197005150..197005154,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002605;1.74e-16;3!CL:0000128;1.38e-07;7!CL:0000126;1.38e-07;7!CL:0000127;1.38e-07;7!CL:0000243;9.97e-07;15!CL:0000125;9.97e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,1.61e-16,3;CL:0000128,1.33e-07,7;CL:0000126,1.33e-07,7;CL:0000127,1.33e-07,7;CL:0002453,1.33e-07,7;CL:0000243,9.21e-07,15;CL:0000125,9.21e-07,15;CL:0000030,9.21e-07,15;CL:0000339,9.21e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0005425;1.93e-13;1!CL:0000339;9.97e-07;15 | |||
|ontology_enrichment_disease=DOID:14566!3.74e-10!239;DOID:162!7.02e-10!235;DOID:0050687!3.53e-08!143;DOID:305!4.91e-08!106;DOID:7!9.18e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:1799;1.93e-13;1!DOID:10165;1.93e-13;1!DOID:1798;1.93e-13;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,2.32e-13,1;DOID:10165,2.32e-13,1;DOID:1798,2.32e-13,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.93e-13;1!UBERON:0001785;1.93e-13;1!UBERON:0002464;1.93e-13;1!UBERON:0004904;1.93e-13;1!UBERON:0002426;1.93e-13;1!UBERON:0003831;1.93e-13;1!UBERON:0003898;1.93e-13;1!UBERON:0004830;1.93e-13;1!UBERON:0001021;1.93e-13;1!UBERON:0003830;1.93e-13;1!UBERON:0005175;1.93e-13;1!UBERON:0001774;1.93e-13;1!UBERON:0001103;1.93e-13;1!UBERON:0002038;5.37e-13;1!UBERON:0009661;5.37e-13;1!UBERON:0002950;5.37e-13;1!UBERON:0001891;5.37e-13;1!UBERON:0003714;2.35e-07;2!UBERON:0005162;2.35e-07;2!UBERON:0000122;2.35e-07;2!UBERON:0005090;2.35e-07;2!UBERON:0001630;2.35e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,1.61e-13,1;UBERON:0001785,1.61e-13,1;UBERON:0002464,1.61e-13,1;UBERON:0004904,1.61e-13,1;UBERON:0001021,1.61e-13,1;UBERON:0003902,1.61e-13,1;UBERON:0005425,1.61e-13,1;UBERON:0002426,2.06e-13,1;UBERON:0003831,2.06e-13,1;UBERON:0003898,2.06e-13,1;UBERON:0004830,2.06e-13,1;UBERON:0003830,2.06e-13,1;UBERON:0005175,2.06e-13,1;UBERON:0001774,2.06e-13,1;UBERON:0001103,2.06e-13,1;UBERON:0010084,2.06e-13,1;UBERON:0002038,6.82e-13,1;UBERON:0009661,6.82e-13,1;UBERON:0002950,6.82e-13,1;UBERON:0001891,6.82e-13,1;UBERON:0009616,6.82e-13,1;UBERON:0010286,6.82e-13,1;UBERON:0003714,2.15e-07,2;UBERON:0005162,2.15e-07,2;UBERON:0000122,2.15e-07,2;UBERON:0005090,2.43e-07,2;UBERON:0001630,2.43e-07,2;UBERON:0001016,2.53e-07,89 | |||
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| |||
|short_description=p@chr3:197005150..197005154,- | |||
}} |
Revision as of 23:36, 12 September 2013
Short description: | p@chr3:197005150..197005154, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:197005150..197005154, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 1.61e-16 | 3 |
oligodendrocyte | 1.33e-07 | 7 |
macroglial cell | 1.33e-07 | 7 |
astrocyte | 1.33e-07 | 7 |
oligodendrocyte precursor cell | 1.33e-07 | 7 |
glial cell (sensu Vertebrata) | 9.21e-07 | 15 |
glial cell | 9.21e-07 | 15 |
glioblast | 9.21e-07 | 15 |
glioblast (sensu Vertebrata) | 9.21e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 1.61e-13 | 1 |
cranial nerve | 1.61e-13 | 1 |
nerve trunk | 1.61e-13 | 1 |
nerve connecting eye with brain | 1.61e-13 | 1 |
nerve | 1.61e-13 | 1 |
retinal neural layer | 1.61e-13 | 1 |
presumptive neural retina | 1.61e-13 | 1 |
chest muscle | 2.06e-13 | 1 |
respiratory system muscle | 2.06e-13 | 1 |
skeletal muscle of trunk | 2.06e-13 | 1 |
respiratory system skeletal muscle | 2.06e-13 | 1 |
thoracic segment muscle | 2.06e-13 | 1 |
chest organ | 2.06e-13 | 1 |
muscle of trunk | 2.06e-13 | 1 |
diaphragm | 2.06e-13 | 1 |
future diaphragm | 2.06e-13 | 1 |
substantia nigra | 6.82e-13 | 1 |
midbrain nucleus | 6.82e-13 | 1 |
regional part of midbrain | 6.82e-13 | 1 |
midbrain | 6.82e-13 | 1 |
presumptive midbrain | 6.82e-13 | 1 |
midbrain neural tube | 6.82e-13 | 1 |
neural tissue | 2.15e-07 | 2 |
multi cell component structure | 2.15e-07 | 2 |
neuron projection bundle | 2.15e-07 | 2 |
muscle structure | 2.43e-07 | 2 |
muscle organ | 2.43e-07 | 2 |
nervous system | 2.53e-07 | 89 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 2.32e-13 | 1 |
endocrine pancreas cancer | 2.32e-13 | 1 |
pancreatic endocrine carcinoma | 2.32e-13 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.