FFCP PHASE1:Hg19::chr20:30102234..30102322,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81502 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16435 | |||
|TSSclassifier=weak | |||
|UniProt=Q8TCT9 | |||
|association_with_transcript=0bp_to_ENST00000376127,ENST00000496438,ENST00000498035,NM_030789,NM_178580,NM_178581,NM_178582,uc002wwb.1,uc002wwc.2,uc002wwd.2,uc002wwe.2_5end | |||
|description=CAGE_peak_1_at_HM13_5end | |||
|id=chr20:30102234..30102322,+ | |||
|ontology_enrichment_celltype=CL:0000548!3.48e-26!679;CL:0000004!3.48e-26!679;CL:0000255!3.48e-26!679;CL:0000012!3.24e-25!682;CL:0000144!5.85e-25!625;CL:0002371!1.30e-23!591;CL:0002194!1.51e-16!63;CL:0000576!1.51e-16!63;CL:0000040!1.51e-16!63;CL:0000559!1.51e-16!63;CL:0000055!7.79e-15!180;CL:0002009!1.08e-14!65;CL:0000063!1.66e-14!578;CL:0002057!2.22e-14!42;CL:0000860!2.25e-13!45;CL:0000222!5.81e-13!119;CL:0000003!8.90e-13!722;CL:0000839!2.44e-12!70;CL:0000766!2.93e-12!76;CL:0000220!3.45e-12!246;CL:0000557!3.55e-12!71;CL:0000048!3.88e-12!430;CL:0002321!1.11e-11!248;CL:0000723!2.03e-11!436;CL:0000057!3.74e-10!75;CL:0000034!4.88e-10!444;CL:0000192!5.22e-09!42;CL:0000514!5.22e-09!42;CL:0000183!1.36e-08!59;CL:0000359!1.78e-08!32;CL:0000680!7.84e-08!57;CL:0000056!7.84e-08!57;CL:0000355!7.84e-08!57;CL:0000187!2.28e-07!54;CL:0002320!2.61e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.32e-15;39!CL:0000234;2.32e-15;39!CL:0000860;1.12e-14;33!CL:0002057;1.12e-14;33!CL:0000576;4.62e-09;48!CL:0000359;3.84e-08;32!CL:0000192;6.77e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,6.43e-18,48;CL:0000234,6.43e-18,48;CL:0002194,4.43e-17,59;CL:0000576,4.43e-17,59;CL:0000040,4.43e-17,59;CL:0000559,4.43e-17,59;CL:0002009,4.08e-15,61;CL:0000860,2.22e-14,42;CL:0002057,2.22e-14,42;CL:0000222,5.06e-13,121;CL:0000839,1.29e-12,66;CL:0000766,1.71e-12,72;CL:0000557,1.94e-12,67;CL:0000048,3.75e-12,427;CL:0002321,8.62e-12,250;CL:0000723,1.97e-11,433;CL:0000057,1.92e-10,76;CL:0000034,4.79e-10,441;CL:0000192,6.53e-09,43;CL:0000514,6.53e-09,43;CL:0000359,1.78e-08,32;CL:0000680,8.74e-08,58;CL:0000056,8.74e-08,58;CL:0000355,8.74e-08,58;CL:0000187,2.53e-07,55;CL:0002320,2.60e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;6.03e-11;42!CL:0000514;6.77e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!6.82e-24!448;UBERON:0004120!6.82e-24!448;UBERON:0006603!6.82e-24!448;UBERON:0002204!1.17e-18!167;UBERON:0003081!1.39e-17!216;UBERON:0002371!3.71e-13!80;UBERON:0002405!4.71e-13!115;UBERON:0003914!5.97e-13!118;UBERON:0001474!1.21e-12!86;UBERON:0004765!3.70e-12!101;UBERON:0001434!3.70e-12!101;UBERON:0005256!1.94e-11!143;UBERON:0000468!6.23e-11!659;UBERON:0000480!9.36e-11!626;UBERON:0000467!1.98e-10!625;UBERON:0002100!2.01e-10!216;UBERON:0001637!7.84e-10!42;UBERON:0003509!7.84e-10!42;UBERON:0004572!7.84e-10!42;UBERON:0004573!1.75e-08!33;UBERON:0004571!1.75e-08!33;UBERON:0000490!2.04e-08!138;UBERON:0009569!1.04e-07!113;UBERON:0000923!1.38e-07!604;UBERON:0005291!1.38e-07!604;UBERON:0006598!1.38e-07!604;UBERON:0002532!1.38e-07!604;UBERON:0000055!1.39e-07!69;UBERON:0002050!1.75e-07!605;UBERON:0005423!1.75e-07!605;UBERON:0000486!1.97e-07!82;UBERON:0002049!2.16e-07!79;UBERON:0007798!2.16e-07!79;UBERON:0002193!3.36e-07!112;UBERON:0004872!3.45e-07!84;UBERON:0002384!3.82e-07!375;UBERON:0004290!4.40e-07!70;UBERON:0001981!4.82e-07!60;UBERON:0007500!4.82e-07!60;UBERON:0004537!4.82e-07!60;UBERON:0006965!4.82e-07!60;UBERON:0002390!7.21e-07!102;UBERON:0003061!7.21e-07!102;UBERON:0000914!8.57e-07!83;UBERON:0002329!8.57e-07!83;UBERON:0003077!8.57e-07!83;UBERON:0003059!8.57e-07!83;UBERON:0007282!8.57e-07!83;UBERON:0009618!8.57e-07!83;UBERON:0007285!8.57e-07!83 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;8.50e-08;33!UBERON:0004571;8.50e-08;33!UBERON:0001637;1.12e-07;42!UBERON:0003509;1.12e-07;42!UBERON:0004572;1.12e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,7.44e-20,315;UBERON:0004120,7.44e-20,315;UBERON:0006603,7.44e-20,315;UBERON:0002204,7.04e-19,167;UBERON:0003081,1.48e-15,203;UBERON:0002371,2.13e-13,76;UBERON:0003914,5.58e-13,117;UBERON:0001474,7.79e-13,82;UBERON:0004765,1.92e-12,90;UBERON:0001434,2.06e-12,100;UBERON:0002100,3.05e-11,199;UBERON:0002405,1.46e-10,93;UBERON:0003104,3.54e-10,160;UBERON:0009142,3.54e-10,160;UBERON:0005256,7.78e-10,122;UBERON:0001637,7.84e-10,42;UBERON:0003509,7.84e-10,42;UBERON:0004572,7.84e-10,42;UBERON:0000490,4.60e-09,148;UBERON:0007503,1.37e-08,78;UBERON:0004573,1.75e-08,33;UBERON:0004571,1.75e-08,33;UBERON:0009569,1.15e-07,112;UBERON:0000486,2.06e-07,83;UBERON:0000055,2.55e-07,68;UBERON:0002193,3.36e-07,108;UBERON:0002384,3.83e-07,371;UBERON:0002049,3.84e-07,78;UBERON:0007798,3.84e-07,78;UBERON:0002329,4.67e-07,71;UBERON:0003059,4.67e-07,71;UBERON:0007282,4.67e-07,71;UBERON:0004290,4.67e-07,71;UBERON:0009618,4.67e-07,71;UBERON:0004872,6.02e-07,83;UBERON:0002390,7.09e-07,98;UBERON:0003061,7.09e-07,98;UBERON:0007524,8.02e-07,73;UBERON:0007500,8.83e-07,59;UBERON:0001981,8.83e-07,59;UBERON:0004537,8.83e-07,59;UBERON:0006965,8.83e-07,59 | |||
|phase1_expression=376.255923469323,279.401183677733,364.649043396277,334.244816499456,295.441283416437,444.020308767088,336.888837963853,464.945826842148,273.722538353431,273.256137389678,558.938735545914,224.339289177687,241.610552057263,174.758090379586,247.222442293025,271.619359166517,313.401154572468,326.448610403156,300.078671256162,182.4654080698,256.224868202782,246.688865803255,82.7222002808754,84.1777714198238,115.499228427219,70.9880539398467,71.8380157687025,70.2100169318019,189.601581441172,108.239890263414,222.935217575149,202.272669385364,302.410742453363,212.97830985607,62.7484324700443,93.2630165117485,101.292151570522,203.316314931199,226.01359229885,214.406740267262,256.831048953193,369.562672927656,263.757381257407,461.930204602677,522.980306065312,530.288757756566,585.953602039231,645.122416306245,665.249284682683,1055.25569503765,951.38086404908,732.621948194837,343.021952332935,347.270759768098,422.530638174346,508.630801444118,604.214216228071,431.918537103453,402.806402360108,431.970470444422,456.486707820515,837.492451174072,781.09968324631,791.925586489746,291.370075583098,393.765345935651,430.992996304938,1034.89325219253,872.962405435417,744.08898195973,291.802560269284,318.560155129243,282.60091198471,206.818925299391,201.336272066896,203.368886143125,258.805166161525,221.811270726905,189.495466715857,206.919251956146,186.186009858348,192.34535391416,75.6783851183688,48.6063364023297,49.8125182163591,60.1689613818775,50.4498943665376,56.9004915554938,62.7992629145619,44.8405264631621,35.2912040847858,48.7406867177879,42.0500550937752,75.3376572900447,84.6367930102119,105.353633910031,71.9957758616629,85.2833355165687,86.5582310787934,65.2027332023645,47.9105731951378,67.7030362200668,75.9824240790854,127.342152219753,58.3319696800178,67.1247700588372,52.535949570413,113.488909276948,115.492700633172,151.282872235382,161.388410386935,97.0840337212426,59.6111983911483,58.8589821797369,52.2677619024884,113.875889411054,68.213247861142,80.4088222429354,54.9052731682321,64.9873445221157,61.2018446625033,57.9775747113508,65.9519021560645,58.1059214641059,64.9639778072198,63.9298580518846,38.5930158552892,94.15034908595,84.7785420633718,65.4606305550251,238.930728987682,256.878429266493,241.276654198742,316.259258336495,269.719795922109,236.389518944064,344.358815073126,357.189994802135,89.4299370372082,147.00659051768,116.732430186165,88.8038131874492,288.886163615986,242.863810023801,292.41720168287,326.667387173425,346.7543610332,220.365336858136,173.886452877159,178.671058139521,174.3146312606,227.101933108017,284.30807081662,217.643557640744,302.039594071132,242.378994949199,233.238382655081,176.498646512652,184.998456597089,155.979805548336,218.736319190267,226.561087504117,181.33810875829,184.566866333626,332.968340579403,108.767069050009,124.164743062272,124.773520375521,220.775957950872,261.048056381235,151.141438742586,86.9750755078017,193.890132074163,164.843551709878,275.322461239206,190.578920055193,326.785858247024,781.05611829902,233.726463868717,251.744242463896,370.419015182076,401.328101274719,206.644127505445,192.905682403793,228.519740552615,297.265987894645,237.96065681024,183.708002557697,255.034782770372,217.92023582998,205.79083311983,128.238472518991,141.962572210851,135.815930081074,246.414084704656,275.394539412984,196.938938921009,249.480600029231,257.652140308256,405.021806062422,517.405062107692,144.600721886543,164.906209191249,220.820100040894,246.26644531415,258.369211858574,293.414929044584,180.584035590753,494.577225594192,209.072683653378,203.666557014339,814.147143676983,149.426167395736,333.902139899135,270.241675393468,1072.40481506101,275.162102575225,357.69865810391,181.614450021257,180.558645466613,877.938722293587,242.611052532158,194.146878195508,194.61367913544,202.923113719581,164.339033157899,98.6767282588427,89.7226531536455,103.64499703961,136.521609455243,140.290393086849,80.6599963557584,416.15575599731,594.997867828419,524.912701139426,185.28280328476,212.954447092528,127.416423642912,116.997774914203,123.156636270459,129.374830015098,121.794609247655,127.177051843548,131.999850688801,124.404408889469,146.203919639628,252.44916548163,350.604434508615,310.738378555207,445.436395498192,353.646547152908,265.363348502959,342.658145875214,135.970634619712,211.786091171242,243.454722813608,193.819004031633,223.679488982663,127.370208045536,66.2933267335072,253.153053226122,491.889153437241,173.197610430328,113.843657685525,314.068257080823,174.972134686421,212.973335785241,164.569841682927,194.390281897982,190.583927985062,501.297824393941,852.243533637104,653.828482908116,182.780976274215,180.748769941973,138.514270005812,114.903584627754,106.953289373138,193.991635657597,247.80960866166,121.859032674305,72.5648404392702,88.4896513980143,79.7852179254721,195.25602494842,625.697041064459,446.598473870279,367.805758948816,223.752624122432,295.237225860571,200.935982139296,188.604483868897,224.955395517973,148.510028787424,261.516680977984,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| |||
|short_description=p1@HM13 | |||
}} |
Revision as of 10:40, 21 January 2014
Short description: | p1@HM13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HM13_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000376127, ENST00000496438, ENST00000498035, NM_030789, NM_178580, NM_178581, NM_178582, uc002wwb.1, uc002wwc.2, uc002wwd.2, uc002wwe.2_5end |
EntrezGene: | HM13 |
HGNC: | 16435 |
UniProt: | Q8TCT9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 6.43e-18 | 48 |
phagocyte | 6.43e-18 | 48 |
monopoietic cell | 4.43e-17 | 59 |
monocyte | 4.43e-17 | 59 |
monoblast | 4.43e-17 | 59 |
promonocyte | 4.43e-17 | 59 |
macrophage dendritic cell progenitor | 4.08e-15 | 61 |
classical monocyte | 2.22e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.22e-14 | 42 |
mesodermal cell | 5.06e-13 | 121 |
myeloid lineage restricted progenitor cell | 1.29e-12 | 66 |
myeloid leukocyte | 1.71e-12 | 72 |
granulocyte monocyte progenitor cell | 1.94e-12 | 67 |
multi fate stem cell | 3.75e-12 | 427 |
embryonic cell | 8.62e-12 | 250 |
somatic stem cell | 1.97e-11 | 433 |
fibroblast | 1.92e-10 | 76 |
stem cell | 4.79e-10 | 441 |
smooth muscle cell | 6.53e-09 | 43 |
smooth muscle myoblast | 6.53e-09 | 43 |
vascular associated smooth muscle cell | 1.78e-08 | 32 |
muscle precursor cell | 8.74e-08 | 58 |
myoblast | 8.74e-08 | 58 |
multi-potent skeletal muscle stem cell | 8.74e-08 | 58 |
muscle cell | 2.53e-07 | 55 |
connective tissue cell | 2.60e-07 | 361 |