FFCP PHASE1:Mm9::chr12:8928823..8928834,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=2050|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr12:8928823..8928834,+|id=chr12:8928823..8928834,+|ontology_enrichment_celltype=CL:0000055!7.67e-16!50;CL:0002319!7.89e-16!43;CL:0000221!1.34e-15!44;CL:0000133!1.34e-15!44;CL:0000393!1.39e-10!39;CL:0000211!1.39e-10!39;CL:0000540!4.98e-10!33;CL:0000047!4.98e-10!33;CL:0000031!4.98e-10!33;CL:0000404!4.98e-10!33;CL:0000333!2.41e-07!10;CL:0000095!2.41e-07!10;CL:0000243!2.41e-07!10;CL:0000123!2.41e-07!10;CL:0000125!2.41e-07!10;CL:0000030!2.41e-07!10;CL:0000339!2.41e-07!10;CL:0000117!2.95e-07!23;CL:0000337!2.95e-07!23;CL:0000723!4.64e-07!91;CL:0000048!4.64e-07!91;CL:0002371!4.81e-07!118;CL:0000034!6.18e-07!97;CL:0002321!8.62e-07!70;CL:0000220!8.62e-07!70|ontology_enrichment_celltype_v019_2=CL:0002319,7.89e-16,43;CL:0000221,1.34e-15,44;CL:0000133,1.34e-15,44;CL:0000393,1.39e-10,39;CL:0000211,1.39e-10,39;CL:0000540,4.98e-10,33;CL:0000047,4.98e-10,33;CL:0000031,4.98e-10,33;CL:0000404,4.98e-10,33;CL:0000333,2.41e-07,10;CL:0000095,2.41e-07,10;CL:0000243,2.41e-07,10;CL:0000123,2.41e-07,10;CL:0000125,2.41e-07,10;CL:0000030,2.41e-07,10;CL:0000339,2.41e-07,10;CL:0000117,2.95e-07,23;CL:0000337,2.95e-07,23;CL:0000723,4.65e-07,91;CL:0000048,4.65e-07,91;CL:0000034,6.20e-07,97;CL:0002321,8.64e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.45e-27!75;UBERON:0001016!3.45e-27!75;UBERON:0001017!6.23e-26!73;UBERON:0005743!6.23e-26!73;UBERON:0004121!8.07e-20!102;UBERON:0000924!8.07e-20!102;UBERON:0006601!8.07e-20!102;UBERON:0002346!1.19e-18!71;UBERON:0003075!1.19e-18!71;UBERON:0007284!1.19e-18!71;UBERON:0001049!1.80e-18!52;UBERON:0005068!1.80e-18!52;UBERON:0006241!1.80e-18!52;UBERON:0007135!1.80e-18!52;UBERON:0000955!7.03e-18!50;UBERON:0006238!7.03e-18!50;UBERON:0002616!1.60e-17!49;UBERON:0003080!4.89e-16!40;UBERON:0002780!6.45e-16!39;UBERON:0001890!6.45e-16!39;UBERON:0006240!6.45e-16!39;UBERON:0000033!1.11e-15!63;UBERON:0003056!1.74e-15!49;UBERON:0002020!5.15e-13!34;UBERON:0002791!2.53e-12!29;UBERON:0003528!2.53e-12!29;UBERON:0001893!2.53e-12!29;UBERON:0000153!2.47e-10!94;UBERON:0007811!7.52e-10!86;UBERON:0000956!6.66e-09!21;UBERON:0001869!6.66e-09!21;UBERON:0000203!6.66e-09!21;UBERON:0002619!5.74e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.45e-27,75;UBERON:0001017,6.23e-26,73;UBERON:0004121,5.56e-20,95;UBERON:0000924,5.56e-20,95;UBERON:0006601,5.56e-20,95;UBERON:0002346,2.76e-19,64;UBERON:0003075,2.76e-19,64;UBERON:0007284,2.76e-19,64;UBERON:0001049,1.80e-18,52;UBERON:0005068,1.80e-18,52;UBERON:0006241,1.80e-18,52;UBERON:0007135,1.80e-18,52;UBERON:0000073,2.07e-18,54;UBERON:0000955,1.44e-17,47;UBERON:0006238,1.44e-17,47;UBERON:0002616,3.25e-17,46;UBERON:0003080,4.89e-16,40;UBERON:0002780,6.45e-16,39;UBERON:0001890,6.45e-16,39;UBERON:0006240,6.45e-16,39;UBERON:0003056,1.74e-15,49;UBERON:0010371,8.02e-14,73;UBERON:0002020,5.15e-13,34;UBERON:0003528,2.53e-12,29;UBERON:0002791,2.53e-12,29;UBERON:0001893,2.53e-12,29;UBERON:0010314,4.95e-12,92;UBERON:0000956,6.66e-09,21;UBERON:0001869,6.66e-09,21;UBERON:0000203,6.66e-09,21;UBERON:0002619,5.74e-08,17;UBERON:0005423,2.07e-07,304|phase1_expression=6.88640042550614,2.79180326111489,2.27499619694768,3.32710632437513,1.00179145989269,3.86122325397347,4.43864017131499,6.71441281896197,8.024957162645,11.7032263160997,3.25314139628459,4.54701306273417,7.87523357683546,5.50748535239684,8.99396356902289,6.88415909125408,6.29605690315332,8.67520954735154,7.26706498110415,8.91218268775863,19.3048268642928,2.78014663362479,3.91799683708403,3.67982572424835,6.42345986988076,6.89078356938024,3.4460959692726,2.15471232685889,5.51067916423484,4.28451220591882,6.43018480900384,5.08024538767705,4.30545351309199,0,4.62162591602039,4.65457007003779,5.10423390655923,12.9744805528441,18.7520482685712,13.6116173433188,15.8822501768374,15.0270006690858,15.0508209439658,13.9745467952891,11.5569701590247,8.81024410376071,39.90195856175,17.0059621976748,18.6733255324301,31.3032137509596,28.8372028548247,30.188038516644,8.89247812106003,5.80289713609076,8.4023449785616,5.65970759279083,6.5902691185914,12.8918023069361,8.49729135610311,15.340738398889,7.60597684207415,36.9340539955354,48.9112137861127,60.7432309164944,50.4321844909157,68.2060910348256,43.7416161356871,29.9690278150813,12.3390638647088,11.0704869431986,13.2504725651371,13.7112472513826,10.6016899656774,19.1085646775328,17.1563393122643,20.2228133054205,6.60695285996332,11.7472351038373,11.2132769277058,13.9799464994005,12.7167824607349,10.939180781692,12.8424179540635,20.8222165711722,15.1270265299042,8.83885756421003,11.10499110233,7.45597783301202,15.0695124733036,22.5958964719289,5.79728977403356,5.16254326188832,2.03991400112325,1.61910957491345,3.24888208723835,0.896053774194671,5.47733238513832,4.77204903218562,3.89679006904303,4.94675404314476,6.61964072950398,3.84979432242953,0,7.11066703153331,10.8245520505607,11.4011939463794,8.59391556525132,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=2050 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr12:8928823..8928834,+ | |||
|description=CAGE_peak_at_chr12:8928823..8928834,+ | |||
|id=chr12:8928823..8928834,+ | |||
|ontology_enrichment_celltype=CL:0000055!7.67e-16!50;CL:0002319!7.89e-16!43;CL:0000221!1.34e-15!44;CL:0000133!1.34e-15!44;CL:0000393!1.39e-10!39;CL:0000211!1.39e-10!39;CL:0000540!4.98e-10!33;CL:0000047!4.98e-10!33;CL:0000031!4.98e-10!33;CL:0000404!4.98e-10!33;CL:0000333!2.41e-07!10;CL:0000095!2.41e-07!10;CL:0000243!2.41e-07!10;CL:0000123!2.41e-07!10;CL:0000125!2.41e-07!10;CL:0000030!2.41e-07!10;CL:0000339!2.41e-07!10;CL:0000117!2.95e-07!23;CL:0000337!2.95e-07!23;CL:0000723!4.64e-07!91;CL:0000048!4.64e-07!91;CL:0002371!4.81e-07!118;CL:0000034!6.18e-07!97;CL:0002321!8.62e-07!70;CL:0000220!8.62e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,7.89e-16,43;CL:0000221,1.34e-15,44;CL:0000133,1.34e-15,44;CL:0000393,1.39e-10,39;CL:0000211,1.39e-10,39;CL:0000540,4.98e-10,33;CL:0000047,4.98e-10,33;CL:0000031,4.98e-10,33;CL:0000404,4.98e-10,33;CL:0000333,2.41e-07,10;CL:0000095,2.41e-07,10;CL:0000243,2.41e-07,10;CL:0000123,2.41e-07,10;CL:0000125,2.41e-07,10;CL:0000030,2.41e-07,10;CL:0000339,2.41e-07,10;CL:0000117,2.95e-07,23;CL:0000337,2.95e-07,23;CL:0000723,4.65e-07,91;CL:0000048,4.65e-07,91;CL:0000034,6.20e-07,97;CL:0002321,8.64e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.45e-27!75;UBERON:0001016!3.45e-27!75;UBERON:0001017!6.23e-26!73;UBERON:0005743!6.23e-26!73;UBERON:0004121!8.07e-20!102;UBERON:0000924!8.07e-20!102;UBERON:0006601!8.07e-20!102;UBERON:0002346!1.19e-18!71;UBERON:0003075!1.19e-18!71;UBERON:0007284!1.19e-18!71;UBERON:0001049!1.80e-18!52;UBERON:0005068!1.80e-18!52;UBERON:0006241!1.80e-18!52;UBERON:0007135!1.80e-18!52;UBERON:0000955!7.03e-18!50;UBERON:0006238!7.03e-18!50;UBERON:0002616!1.60e-17!49;UBERON:0003080!4.89e-16!40;UBERON:0002780!6.45e-16!39;UBERON:0001890!6.45e-16!39;UBERON:0006240!6.45e-16!39;UBERON:0000033!1.11e-15!63;UBERON:0003056!1.74e-15!49;UBERON:0002020!5.15e-13!34;UBERON:0002791!2.53e-12!29;UBERON:0003528!2.53e-12!29;UBERON:0001893!2.53e-12!29;UBERON:0000153!2.47e-10!94;UBERON:0007811!7.52e-10!86;UBERON:0000956!6.66e-09!21;UBERON:0001869!6.66e-09!21;UBERON:0000203!6.66e-09!21;UBERON:0002619!5.74e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.45e-27,75;UBERON:0001017,6.23e-26,73;UBERON:0004121,5.56e-20,95;UBERON:0000924,5.56e-20,95;UBERON:0006601,5.56e-20,95;UBERON:0002346,2.76e-19,64;UBERON:0003075,2.76e-19,64;UBERON:0007284,2.76e-19,64;UBERON:0001049,1.80e-18,52;UBERON:0005068,1.80e-18,52;UBERON:0006241,1.80e-18,52;UBERON:0007135,1.80e-18,52;UBERON:0000073,2.07e-18,54;UBERON:0000955,1.44e-17,47;UBERON:0006238,1.44e-17,47;UBERON:0002616,3.25e-17,46;UBERON:0003080,4.89e-16,40;UBERON:0002780,6.45e-16,39;UBERON:0001890,6.45e-16,39;UBERON:0006240,6.45e-16,39;UBERON:0003056,1.74e-15,49;UBERON:0010371,8.02e-14,73;UBERON:0002020,5.15e-13,34;UBERON:0003528,2.53e-12,29;UBERON:0002791,2.53e-12,29;UBERON:0001893,2.53e-12,29;UBERON:0010314,4.95e-12,92;UBERON:0000956,6.66e-09,21;UBERON:0001869,6.66e-09,21;UBERON:0000203,6.66e-09,21;UBERON:0002619,5.74e-08,17;UBERON:0005423,2.07e-07,304 | |||
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| |||
|short_description=p@chr12:8928823..8928834,+ | |||
}} |
Latest revision as of 11:10, 5 August 2015
Short description: | p@chr12:8928823..8928834, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:8928823..8928834, + |
Coexpression cluster: | MCL_coexpression_mm9:2050 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 7.89e-16 | 43 |
ectodermal cell | 1.34e-15 | 44 |
neurectodermal cell | 1.34e-15 | 44 |
electrically responsive cell | 1.39e-10 | 39 |
electrically active cell | 1.39e-10 | 39 |
neuron | 4.98e-10 | 33 |
neuronal stem cell | 4.98e-10 | 33 |
neuroblast | 4.98e-10 | 33 |
electrically signaling cell | 4.98e-10 | 33 |
migratory neural crest cell | 2.41e-07 | 10 |
neuron associated cell | 2.41e-07 | 10 |
glial cell (sensu Vertebrata) | 2.41e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 2.41e-07 | 10 |
glial cell | 2.41e-07 | 10 |
glioblast | 2.41e-07 | 10 |
glioblast (sensu Vertebrata) | 2.41e-07 | 10 |
CNS neuron (sensu Vertebrata) | 2.95e-07 | 23 |
neuroblast (sensu Vertebrata) | 2.95e-07 | 23 |
somatic stem cell | 4.65e-07 | 91 |
multi fate stem cell | 4.65e-07 | 91 |
stem cell | 6.20e-07 | 97 |
embryonic cell | 8.64e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.45e-27 | 75 |
central nervous system | 6.23e-26 | 73 |
ectoderm-derived structure | 5.56e-20 | 95 |
ectoderm | 5.56e-20 | 95 |
presumptive ectoderm | 5.56e-20 | 95 |
neurectoderm | 2.76e-19 | 64 |
neural plate | 2.76e-19 | 64 |
presumptive neural plate | 2.76e-19 | 64 |
neural tube | 1.80e-18 | 52 |
neural rod | 1.80e-18 | 52 |
future spinal cord | 1.80e-18 | 52 |
neural keel | 1.80e-18 | 52 |
regional part of nervous system | 2.07e-18 | 54 |
brain | 1.44e-17 | 47 |
future brain | 1.44e-17 | 47 |
regional part of brain | 3.25e-17 | 46 |
anterior neural tube | 4.89e-16 | 40 |
regional part of forebrain | 6.45e-16 | 39 |
forebrain | 6.45e-16 | 39 |
future forebrain | 6.45e-16 | 39 |
pre-chordal neural plate | 1.74e-15 | 49 |
ecto-epithelium | 8.02e-14 | 73 |
gray matter | 5.15e-13 | 34 |
brain grey matter | 2.53e-12 | 29 |
regional part of telencephalon | 2.53e-12 | 29 |
telencephalon | 2.53e-12 | 29 |
structure with developmental contribution from neural crest | 4.95e-12 | 92 |
cerebral cortex | 6.66e-09 | 21 |
cerebral hemisphere | 6.66e-09 | 21 |
pallium | 6.66e-09 | 21 |
regional part of cerebral cortex | 5.74e-08 | 17 |
developing anatomical structure | 2.07e-07 | 304 |