FFCP PHASE1:Hg19::chr5:54603807..54603843,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23517 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18734 | |||
|TSSclassifier=strong | |||
|UniProt=D6REC7,F5H7E2 | |||
|association_with_transcript=0bp_to_ENST00000503165,ENST00000504388,ENST00000506750,ENST00000545714_5end | |||
|description=CAGE_peak_1_at_SKIV2L2_5end | |||
|id=chr5:54603807..54603843,+ | |||
|ontology_enrichment_celltype=CL:0000037!4.23e-11!172;CL:0000566!4.23e-11!172;CL:0002032!7.05e-10!165;CL:0000837!7.05e-10!165;CL:0000988!3.02e-09!182 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.73e-10,168;CL:0002032,2.71e-09,161;CL:0000837,2.71e-09,161;CL:0000988,4.84e-09,177 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2531!6.29e-14!51;DOID:0060083!6.29e-14!51;DOID:1240!5.17e-13!39;DOID:8692!1.02e-12!31;DOID:162!4.33e-11!235;DOID:14566!1.70e-10!239 | |||
|ontology_enrichment_disease_v019=DOID:8692;1.51e-12;31!DOID:1240;1.44e-10;39!DOID:2531;1.15e-08;51!DOID:0060083;1.15e-08;51 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,6.29e-14,51;DOID:0060083,6.29e-14,51;DOID:1240,5.17e-13,39;DOID:8692,1.02e-12,31;DOID:162,4.33e-11,235;DOID:14566,1.70e-10,239 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.52e-19!115;UBERON:0001049!2.23e-12!57;UBERON:0005068!2.23e-12!57;UBERON:0006241!2.23e-12!57;UBERON:0007135!2.23e-12!57;UBERON:0000073!3.52e-12!94;UBERON:0001016!3.52e-12!94;UBERON:0001017!1.33e-11!82;UBERON:0003080!5.82e-11!42;UBERON:0005743!6.06e-11!86;UBERON:0000955!1.19e-10!69;UBERON:0006238!1.19e-10!69;UBERON:0002780!1.42e-10!41;UBERON:0001890!1.42e-10!41;UBERON:0006240!1.42e-10!41;UBERON:0002616!3.31e-09!59;UBERON:0002346!3.39e-09!90;UBERON:0002020!4.83e-09!34;UBERON:0003528!4.83e-09!34;UBERON:0003075!1.38e-08!86;UBERON:0007284!1.38e-08!86;UBERON:0002791!4.94e-08!33;UBERON:0001893!8.77e-08!34;UBERON:0001869!1.16e-07!32;UBERON:0002619!9.14e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;7.15e-08;41!UBERON:0001890;7.15e-08;41!UBERON:0003528;7.32e-08;34!UBERON:0002020;7.32e-08;34!UBERON:0002791;1.53e-07;32!UBERON:0001869;3.91e-07;32!UBERON:0002619;9.30e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.07e-18,114;UBERON:0001016,1.69e-12,89;UBERON:0001049,5.34e-12,56;UBERON:0005068,5.34e-12,56;UBERON:0006241,5.34e-12,56;UBERON:0007135,5.34e-12,56;UBERON:0001017,2.92e-11,81;UBERON:0000073,6.43e-11,53;UBERON:0002616,6.43e-11,53;UBERON:0002780,1.42e-10,41;UBERON:0001890,1.42e-10,41;UBERON:0003080,1.42e-10,41;UBERON:0006240,1.42e-10,41;UBERON:0000955,2.62e-10,68;UBERON:0006238,2.62e-10,68;UBERON:0003528,4.83e-09,34;UBERON:0002020,4.83e-09,34;UBERON:0002346,3.12e-08,86;UBERON:0002791,3.76e-08,32;UBERON:0001893,8.77e-08,34;UBERON:0001869,1.16e-07,32;UBERON:0003075,1.22e-07,82;UBERON:0007284,1.22e-07,82;UBERON:0011216,5.23e-07,223;UBERON:0002619,9.14e-07,22 | |||
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| |||
|short_description=p1@SKIV2L2 | |||
}} |
Revision as of 05:25, 22 January 2014
Short description: | p1@SKIV2L2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SKIV2L2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000503165, ENST00000504388, ENST00000506750, ENST00000545714_5end |
EntrezGene: | SKIV2L2 |
HGNC: | 18734 |
UniProt: | D6REC7F5H7E2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.73e-10 | 168 |
hematopoietic oligopotent progenitor cell | 2.71e-09 | 161 |
hematopoietic multipotent progenitor cell | 2.71e-09 | 161 |
hematopoietic cell | 4.84e-09 | 177 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.07e-18 | 114 |
nervous system | 1.69e-12 | 89 |
neural tube | 5.34e-12 | 56 |
neural rod | 5.34e-12 | 56 |
future spinal cord | 5.34e-12 | 56 |
neural keel | 5.34e-12 | 56 |
central nervous system | 2.92e-11 | 81 |
regional part of nervous system | 6.43e-11 | 53 |
regional part of brain | 6.43e-11 | 53 |
regional part of forebrain | 1.42e-10 | 41 |
forebrain | 1.42e-10 | 41 |
anterior neural tube | 1.42e-10 | 41 |
future forebrain | 1.42e-10 | 41 |
brain | 2.62e-10 | 68 |
future brain | 2.62e-10 | 68 |
brain grey matter | 4.83e-09 | 34 |
gray matter | 4.83e-09 | 34 |
neurectoderm | 3.12e-08 | 86 |
regional part of telencephalon | 3.76e-08 | 32 |
telencephalon | 8.77e-08 | 34 |
cerebral hemisphere | 1.16e-07 | 32 |
neural plate | 1.22e-07 | 82 |
presumptive neural plate | 1.22e-07 | 82 |
organ system subdivision | 5.23e-07 | 223 |
regional part of cerebral cortex | 9.14e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 6.29e-14 | 51 |
immune system cancer | 6.29e-14 | 51 |
leukemia | 5.17e-13 | 39 |
myeloid leukemia | 1.02e-12 | 31 |
cancer | 4.33e-11 | 235 |
disease of cellular proliferation | 1.70e-10 | 239 |