FFCP PHASE1:Hg19::chr6:34524025..34524045,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25803 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17257 | |||
|TSSclassifier=strong | |||
|UniProt=O95238 | |||
|association_with_transcript=45bp_to_ENST00000374037,uc003ojq.1,uc011dsq.1_5end | |||
|coexpression_cluster_id=C37 | |||
|description=CAGE_peak_3_at_SPDEF_5end | |||
|id=chr6:34524025..34524045,- | |||
|ontology_enrichment_celltype=CL:0002368!2.71e-24!13;CL:0002076!1.16e-23!43;CL:0000066!4.57e-16!254;CL:0002202!6.47e-16!9;CL:0002632!6.47e-16!9;CL:0000223!2.50e-15!59;CL:0000244!1.86e-10!4;CL:0000731!1.86e-10!4;CL:0000068!2.41e-08!3;CL:0000069!2.41e-08!3;CL:0000307!2.41e-08!3;CL:0000377!2.41e-08!3;CL:0002328!2.90e-08!3;CL:0002621!5.71e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002368;3.49e-32;13!CL:0000244;3.46e-18;4!CL:0000731;3.46e-18;4!CL:0002076;7.48e-18;42!CL:0002202;1.79e-17;9!CL:0002632;1.79e-17;9!CL:0000307;3.12e-14;3!CL:0002328;4.41e-14;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,3.61e-32,13;CL:0002076,2.68e-22,42;CL:0000244,3.54e-18,4;CL:0000731,3.54e-18,4;CL:0002202,1.79e-17,9;CL:0002632,1.79e-17,9;CL:0000223,4.29e-15,58;CL:0000066,1.81e-14,253;CL:0000068,3.12e-14,3;CL:0000069,3.12e-14,3;CL:0000307,3.12e-14,3;CL:0000377,3.12e-14,3;CL:0002328,4.41e-14,3 | |||
|ontology_enrichment_development_v019=CL:0000377;3.12e-14;3!UBERON:0009847;1.03e-12;3!UBERON:0003353;1.03e-12;3!CL:0000223;4.68e-09;58 | |||
|ontology_enrichment_disease=DOID:5093!8.83e-10!4;DOID:1612!8.83e-10!4 | |||
|ontology_enrichment_disease_v019=DOID:5093;6.80e-17;4!DOID:1612;6.80e-17;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,6.53e-17,4;DOID:1612,6.53e-17,4 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.27e-21!169;UBERON:0000925!3.27e-21!169;UBERON:0006595!3.27e-21!169;UBERON:0001004!1.19e-16!72;UBERON:0007196!5.01e-15!14;UBERON:0001558!5.01e-15!14;UBERON:0001007!6.90e-15!155;UBERON:0001555!6.90e-15!155;UBERON:0007026!6.90e-15!155;UBERON:0005911!2.46e-13!82;UBERON:0000065!4.26e-13!53;UBERON:0000077!5.96e-12!130;UBERON:0004921!7.43e-12!129;UBERON:0004185!7.43e-12!129;UBERON:0002294!6.28e-11!7;UBERON:0001173!6.28e-11!7;UBERON:0004912!6.28e-11!7;UBERON:0000915!7.78e-11!52;UBERON:0000161!1.41e-10!35;UBERON:0005178!8.68e-10!34;UBERON:0002224!8.68e-10!34;UBERON:0005181!2.09e-09!35;UBERON:0001041!5.03e-09!98;UBERON:0000466!5.19e-09!126;UBERON:0000464!6.87e-09!104;UBERON:0003126!1.35e-08!7;UBERON:0001005!1.35e-08!7;UBERON:0005153!1.67e-08!37;UBERON:0000166!1.73e-08!21;UBERON:0000072!2.13e-08!46;UBERON:0000365!2.52e-08!5;UBERON:0004815!2.90e-08!3;UBERON:0002031!2.90e-08!3;UBERON:0009569!1.11e-07!113;UBERON:0000475!2.40e-07!365;UBERON:0000165!3.58e-07!28;UBERON:0000930!3.58e-07!28;UBERON:0008947!4.05e-07!38;UBERON:0003258!4.05e-07!38;UBERON:0002110!4.16e-07!3;UBERON:0006242!4.16e-07!3;UBERON:0004807!5.39e-07!28;UBERON:0001949!5.71e-07!3;UBERON:0005910!6.69e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0007196;1.93e-17;15!UBERON:0001558;1.93e-17;15!UBERON:0003126;2.47e-15;7!UBERON:0001005;2.47e-15;7!UBERON:0000365;1.45e-14;5!UBERON:0004815;4.41e-14;3!UBERON:0002031;4.41e-14;3!UBERON:0005910;3.81e-12;6!UBERON:0000915;1.37e-10;52!UBERON:0000310;4.65e-10;10!UBERON:0001829;5.68e-10;2!UBERON:0002294;1.43e-09;7!UBERON:0001173;1.43e-09;7!UBERON:0005181;1.49e-09;35!UBERON:0000065;1.63e-09;44!UBERON:0005178;2.09e-09;34!UBERON:0002224;2.09e-09;34!UBERON:0001443;4.06e-09;11!UBERON:0003127;4.26e-09;2!UBERON:0006562;4.82e-09;2!UBERON:0002367;5.01e-09;11!UBERON:0010147;5.01e-09;11!UBERON:0000486;6.10e-09;12!UBERON:0002185;1.30e-08;5!UBERON:0003937;2.99e-08;12!UBERON:0005399;2.99e-08;12!UBERON:0001044;3.22e-07;6!UBERON:0003293;3.22e-07;6!UBERON:0003294;3.22e-07;6!UBERON:0010047;3.22e-07;6!UBERON:0003408;3.22e-07;6!UBERON:0000167;3.22e-07;6!UBERON:0000072;7.05e-07;37!UBERON:0005911;7.55e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.72e-22,160;UBERON:0000925,1.72e-22,160;UBERON:0006595,1.72e-22,160;UBERON:0007196,1.95e-17,15;UBERON:0001558,1.95e-17,15;UBERON:0003126,2.51e-15,7;UBERON:0001005,2.51e-15,7;UBERON:0000915,9.28e-15,52;UBERON:0000365,1.48e-14,5;UBERON:0001004,2.05e-14,74;UBERON:0004815,4.41e-14,3;UBERON:0002031,4.41e-14,3;UBERON:0001007,4.82e-13,145;UBERON:0001555,4.82e-13,145;UBERON:0007026,4.82e-13,145;UBERON:0000065,2.57e-12,54;UBERON:0005911,2.86e-12,82;UBERON:0005910,3.87e-12,6;UBERON:0004921,9.35e-12,118;UBERON:0005178,1.18e-10,34;UBERON:0002224,1.18e-10,34;UBERON:0005181,2.70e-10,35;UBERON:0000310,4.26e-10,10;UBERON:0001829,5.68e-10,2;UBERON:0000161,1.50e-09,36;UBERON:0005153,2.45e-09,37;UBERON:0001443,3.75e-09,11;UBERON:0003127,4.35e-09,2;UBERON:0002367,5.52e-09,11;UBERON:0010147,5.52e-09,11;UBERON:0009846,5.52e-09,11;UBERON:0003353,5.52e-09,11;UBERON:0004902,5.52e-09,11;UBERON:0003820,5.52e-09,11;UBERON:0009847,5.52e-09,11;UBERON:0001041,8.29e-09,87;UBERON:0002185,1.30e-08,5;UBERON:0005157,1.84e-08,47;UBERON:0003937,3.27e-08,12;UBERON:0005399,3.27e-08,12;UBERON:0009569,7.79e-08,112;UBERON:0008947,1.36e-07,38;UBERON:0003258,1.36e-07,38;UBERON:0002294,1.78e-07,9;UBERON:0001173,1.78e-07,9;UBERON:0004912,1.78e-07,9;UBERON:0001044,3.22e-07,6;UBERON:0003293,3.22e-07,6;UBERON:0003294,3.22e-07,6;UBERON:0010047,3.22e-07,6;UBERON:0000167,3.22e-07,6;UBERON:0000072,3.85e-07,47;UBERON:0002100,4.20e-07,199;UBERON:0000162,5.35e-07,14;UBERON:0001353,5.35e-07,14;UBERON:0000163,5.35e-07,14;UBERON:0006866,5.35e-07,14;UBERON:0000164,5.35e-07,14;UBERON:0000931,5.35e-07,14;UBERON:0006554,5.44e-07,47;UBERON:0001008,8.30e-07,48 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,1.39560233594486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.824373060931,46.0845055730723,14.4204063965047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.196468613246569,2.91436230634034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18047026071267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,3.00020732649918,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0.109750285408626,3.37205259772859,0,2.40729957412177,0,0,0,0,0,0,0,0,4.74122638775565,5.15091697256924,0,0,0,7.49870671894216,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.0303882181971,1.38121483403844,0,0,0,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0.671624264166535,0,0,0,0,0,0.103041011647722,0,0,0.574265537996172,3.25030123018261,0,0,0,0,0,0,0,0,0,15.040927297849,21.1409074101617,10.4642424245559,5.36136238534415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,25.8837483231627,25.4714864703599,34.8451151556232,0.282431402330337,31.857397577671,8.42357378338128,27.9360996728106,28.7154250258699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0.552567831062295,0,0,0,0,4.22381250392436,0.537063524026827,0,0,0,0,0,0,0,2.86470537193757,6.0347399997375,1.44999915086959,0.341380344856499,0.762760950878299,0,0,0,0,0,0,0,0,0,0,0,0,0.923403102045565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0.520679215005393,0.0979923974143777,0,0,0,0,0,0,0,0,0.677942222341597,0,0,0,0.391102765469606,3.92778219232515,1.28071796843612,0,0.432271251462318,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,1.53978154095896,0.704815022316672,0.533937062838473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8747061194316,0,0,0.705797459094515,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53574548030352,0,0,0,0,0,0.559518030877778,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366857197043358,0,0,0,0,0.0752103283492573,0,0,0,0,8.87136517302272,0,0,0,0,0,32.8954660114309,0.496211178389294,0,5.62154681614219,0,0,0,0,0,0,0,0,0,1.18193840883968,15.4611648629976,1.17739639275771,0,0,0,0,0,0,0,0,0,0,0,0,0,16.3486396351705,0,0,0.846774100381858,0,0,0,0,0.196300467230486,0.731507549893617,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,15.1380663523498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.852935927603924,0.476128862927481,0.0645889098360061,0,0,0,0,0.870866991587845,0.684466602170562,1.14498490124799,3.65783247502649,2.32862249582209,0,0,0,0,0,0.122241444182866,1.22068853494722,0,0,0 | |||
|short_description=p3@SPDEF | |||
}} |
Revision as of 11:31, 22 January 2014
Short description: | p3@SPDEF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SPDEF_5end |
Coexpression cluster: | C37_salivary_submaxillary_parotid_seminal_tongue_ductus_trachea |
Association with transcript: | 45bp_to_ENST00000374037, uc003ojq.1, uc011dsq.1_5end |
EntrezGene: | SPDEF |
HGNC: | 17257 |
UniProt: | O95238 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 3.61e-32 | 13 |
endo-epithelial cell | 2.68e-22 | 42 |
transitional epithelial cell | 3.54e-18 | 4 |
urothelial cell | 3.54e-18 | 4 |
epithelial cell of tracheobronchial tree | 1.79e-17 | 9 |
epithelial cell of lower respiratory tract | 1.79e-17 | 9 |
endodermal cell | 4.29e-15 | 58 |
epithelial cell | 1.81e-14 | 253 |
duct epithelial cell | 3.12e-14 | 3 |
branched duct epithelial cell | 3.12e-14 | 3 |
tracheal epithelial cell | 3.12e-14 | 3 |
tracheoblast | 3.12e-14 | 3 |
bronchial epithelial cell | 4.41e-14 | 3 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 6.53e-17 | 4 |
breast cancer | 6.53e-17 | 4 |