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{{f5samples
{{f5samples
|id=FF:11773-123I9
|ancestors_in_anatomy_facet=UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000153,UBERON:0000161,UBERON:0000165,UBERON:0000166,UBERON:0000167,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000930,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001044,UBERON:0001062,UBERON:0001444,UBERON:0001555,UBERON:0002050,UBERON:0002530,UBERON:0002532,UBERON:0002553,UBERON:0003104,UBERON:0003293,UBERON:0003294,UBERON:0003408,UBERON:0004111,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005423,UBERON:0007026,UBERON:0009142
|name=salivary acinar cells, donor3
|sample_id=11773
|rna_tube_id=123I9
|rna_box=123
|rna_position=I9
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=
|sample_strain=
|sample_dev_stage=
|sample_tissue=parotid gland
|sample_donor(cell lot)=donorC
|sample_sex=female
|sample_age=80
|sample_ethnicity=
|rna_rin=
|rna_od260/230=2.22
|rna_od260/280=2.16
|sample_cell_type=salivary acinar cell
|sample_cell_line=
|sample_collaboration=Swati Pradhan
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_weight_ug=56.52
|rna_concentration=1.57
|sample_note=
|profile_hcage=CNhs12812,LSID972,release012,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000144,CL:0000150,CL:0000151,CL:0000154,CL:0000255,CL:0000548,CL:0000622,CL:0002371,CL:0002623
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000144,CL:0000150,CL:0000151,CL:0000154,CL:0000255,CL:0000548,CL:0000622,CL:0002371,CL:0002623
|ancestors_in_anatomy_facet=UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000153,UBERON:0000161,UBERON:0000165,UBERON:0000166,UBERON:0000167,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000930,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001044,UBERON:0001062,UBERON:0001444,UBERON:0001555,UBERON:0002050,UBERON:0002530,UBERON:0002532,UBERON:0002553,UBERON:0003104,UBERON:0003293,UBERON:0003294,UBERON:0003408,UBERON:0004111,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005423,UBERON:0007026,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|comment=
|created_by=
|creation_date=
|def=
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 33:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=NKX2-1,4:2.39102036288;TP53:1.97026812037;TBX4,5:1.96446237573;TBP:1.87904125533;TFAP2{A,C}:1.81456088316;VSX1,2:1.79285558938;FOXO1,3,4:1.72384358136;PDX1:1.51626982239;ONECUT1,2:1.43598276799;SP1:1.41262423754;FOXN1:1.33026717077;SOX5:1.3270956095;BPTF:1.20289107698;MED-1{core}:1.18715645734;MAZ:1.15429214639;HOX{A4,D4}:1.11046197424;EGR1..3:1.07879735773;ZEB1:1.07580048374;SNAI1..3:1.04170016867;RORA:1.00790597006;TLX2:0.97050805003;SMAD1..7,9:0.959546837703;TEAD1:0.959048406442;bHLH_family:0.919272949611;HBP1_HMGB_SSRP1_UBTF:0.886490954537;TFCP2:0.883110879986;AR:0.856815595346;POU6F1:0.836886199689;NKX2-3_NKX2-5:0.794351843108;RBPJ:0.757055007345;ZNF148:0.722440929338;TEF:0.703916243156;CDC5L:0.691197714544;XCPE1{core}:0.675035545919;TFAP2B:0.665222338785;FOX{D1,D2}:0.661894316;HOX{A6,A7,B6,B7}:0.607506546534;ZBTB6:0.577611152051;PAX1,9:0.543693151422;GTF2A1,2:0.538390285201;FOS_FOS{B,L1}_JUN{B,D}:0.518640847538;FOX{F1,F2,J1}:0.496499855049;TLX1..3_NFIC{dimer}:0.492143233969;ZBTB16:0.483625358033;DBP:0.478168158037;PITX1..3:0.439925166629;SOX17:0.435693726995;MTF1:0.430799172056;MAFB:0.398260154428;MYOD1:0.398092060846;FOXM1:0.392526033748;ZNF423:0.375271394715;MYBL2:0.336681769151;NR3C1:0.333347944491;TFDP1:0.330632331268;PPARG:0.328729479287;CEBPA,B_DDIT3:0.32784173389;T:0.326315219952;HIC1:0.304405939201;FOXQ1:0.297969513885;GTF2I:0.286599282497;MYFfamily:0.271598105639;RFX2..5_RFXANK_RFXAP:0.27049015992;BREu{core}:0.267948234333;TGIF1:0.25830777592;TOPORS:0.236454314244;POU1F1:0.207948078176;PATZ1:0.205828820453;EVI1:0.204427328695;MZF1:0.192838928686;PAX2:0.192161124273;POU2F1..3:0.186756568201;NR1H4:0.166258312313;SREBF1,2:0.165456205711;BACH2:0.159088101761;PAX5:0.156571670331;GZF1:0.138014756638;SPZ1:0.11561552717;PAX4:0.100842246157;ZNF384:0.08789958095;NFIL3:0.065946206646;FOSL2:0.0565128391858;NR6A1:0.0466522202154;ADNP_IRX_SIX_ZHX:0.0453463914079;ZNF143:0.0424773218398;REST:0.0393715048769;MTE{core}:0.0353321537581;HAND1,2:0.0195821474859;EP300:0.00711152040163;LMO2:0.00572693444382;ZFP161:-0.00052892540543;ATF4:-0.0235715445581;NHLH1,2:-0.0299900563291;ESRRA:-0.0396742327679;STAT1,3:-0.0428008518256;HLF:-0.050744435827;GFI1:-0.0583171111765;FOXA2:-0.0641334210367;ATF2:-0.064648928436;NRF1:-0.0685053669961;CUX2:-0.0817488791614;ELK1,4_GABP{A,B1}:-0.0933629927554;NFE2:-0.100140020225;CDX1,2,4:-0.107704593845;TAL1_TCF{3,4,12}:-0.119413200119;FOX{I1,J2}:-0.119552794925;SOX2:-0.136369913127;FOXD3:-0.13851256407;STAT5{A,B}:-0.150747571986;LHX3,4:-0.154033348133;HNF1A:-0.157209945406;GLI1..3:-0.171343636137;LEF1_TCF7_TCF7L1,2:-0.184168953186;TFAP4:-0.18626952354;ESR1:-0.186302165547;NFKB1_REL_RELA:-0.187474906408;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.207979722085;NANOG:-0.220809977724;HIF1A:-0.239729441103;GFI1B:-0.24197408429;PRRX1,2:-0.244714984416;FOXL1:-0.245406736281;RFX1:-0.262113901095;HNF4A_NR2F1,2:-0.271653747772;RREB1:-0.277151281072;KLF4:-0.282761439587;MEF2{A,B,C,D}:-0.288096984984;UFEwm:-0.314164530515;ARID5B:-0.320501329879;CREB1:-0.322130301378;NFATC1..3:-0.332273390586;ALX4:-0.337821941426;IKZF1:-0.33856552216;POU5F1:-0.347787658852;SRF:-0.357038540224;AHR_ARNT_ARNT2:-0.369201970507;ATF5_CREB3:-0.373347069232;NKX3-2:-0.401903062395;NKX6-1,2:-0.405188655607;FOXP3:-0.416799337952;IRF7:-0.426584414373;GATA6:-0.427484169038;NFIX:-0.427696481099;ZNF238:-0.434061274201;FOXP1:-0.442124924348;IKZF2:-0.456864920676;GATA4:-0.468030820867;ATF6:-0.5008774198;HMGA1,2:-0.502880925698;HOX{A5,B5}:-0.534722474256;NFE2L2:-0.582295991689;JUN:-0.58418459883;ALX1:-0.618921552226;ETS1,2:-0.648228131143;RUNX1..3:-0.664878545174;ZIC1..3:-0.693933015139;AIRE:-0.697384970942;PRDM1:-0.713183948089;OCT4_SOX2{dimer}:-0.714217515223;HSF1,2:-0.719656240096;SPI1:-0.725436001125;PAX6:-0.737049540762;SOX{8,9,10}:-0.77052670907;NKX3-1:-0.773041603018;IRF1,2:-0.774160506858;SPIB:-0.801453690178;ELF1,2,4:-0.821235072041;NFY{A,B,C}:-0.839874338285;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.843032893158;CRX:-0.866707965843;E2F1..5:-0.871082605512;STAT2,4,6:-0.886510565411;RXR{A,B,G}:-0.958327788955;RXRA_VDR{dimer}:-0.976310091561;GCM1,2:-0.986723946805;EBF1:-1.04772186796;POU3F1..4:-1.05859176945;HES1:-1.1152026276;PAX8:-1.15539297454;YY1:-1.15935950244;DMAP1_NCOR{1,2}_SMARC:-1.15938582468;XBP1:-1.16583175523;PAX3,7:-1.18289262307;NR5A1,2:-1.19070968;MYB:-1.21785623709;NKX2-2,8:-1.29443029124;NANOG{mouse}:-1.29626242675;HMX1:-1.30433281858;NFE2L1:-1.45412354473;PBX1:-1.54208487644;EN1,2:-1.5653278181;HOXA9_MEIS1:-1.71098124429
|comment=
|created_by=
|creation_date=
|def=
|has_quality=
|has_quality=
|id=FF:11773-123I9
|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0000278
|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0000278
|name=salivary acinar cells, donor3
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12812,LSID972,release012,COMPLETED
|profile_rnaseq=,,,
|profile_srnaseq=,,,
|rna_box=123
|rna_catalog_number=
|rna_concentration=1.57
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_lot_number=
|rna_od260/230=2.22
|rna_od260/280=2.16
|rna_position=I9
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=123I9
|rna_weight_ug=56.52
|sample_age=80
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=salivary acinar cell
|sample_collaboration=Swati Pradhan
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=donorC
|sample_ethnicity=
|sample_experimental_condition=
|sample_id=11773
|sample_note=
|sample_sex=female
|sample_species=
|sample_strain=
|sample_tissue=parotid gland
|top_motifs=NKX2-1,4:2.39102036288;TP53:1.97026812037;TBX4,5:1.96446237573;TBP:1.87904125533;TFAP2{A,C}:1.81456088316;VSX1,2:1.79285558938;FOXO1,3,4:1.72384358136;PDX1:1.51626982239;ONECUT1,2:1.43598276799;SP1:1.41262423754;FOXN1:1.33026717077;SOX5:1.3270956095;BPTF:1.20289107698;MED-1{core}:1.18715645734;MAZ:1.15429214639;HOX{A4,D4}:1.11046197424;EGR1..3:1.07879735773;ZEB1:1.07580048374;SNAI1..3:1.04170016867;RORA:1.00790597006;TLX2:0.97050805003;SMAD1..7,9:0.959546837703;TEAD1:0.959048406442;bHLH_family:0.919272949611;HBP1_HMGB_SSRP1_UBTF:0.886490954537;TFCP2:0.883110879986;AR:0.856815595346;POU6F1:0.836886199689;NKX2-3_NKX2-5:0.794351843108;RBPJ:0.757055007345;ZNF148:0.722440929338;TEF:0.703916243156;CDC5L:0.691197714544;XCPE1{core}:0.675035545919;TFAP2B:0.665222338785;FOX{D1,D2}:0.661894316;HOX{A6,A7,B6,B7}:0.607506546534;ZBTB6:0.577611152051;PAX1,9:0.543693151422;GTF2A1,2:0.538390285201;FOS_FOS{B,L1}_JUN{B,D}:0.518640847538;FOX{F1,F2,J1}:0.496499855049;TLX1..3_NFIC{dimer}:0.492143233969;ZBTB16:0.483625358033;DBP:0.478168158037;PITX1..3:0.439925166629;SOX17:0.435693726995;MTF1:0.430799172056;MAFB:0.398260154428;MYOD1:0.398092060846;FOXM1:0.392526033748;ZNF423:0.375271394715;MYBL2:0.336681769151;NR3C1:0.333347944491;TFDP1:0.330632331268;PPARG:0.328729479287;CEBPA,B_DDIT3:0.32784173389;T:0.326315219952;HIC1:0.304405939201;FOXQ1:0.297969513885;GTF2I:0.286599282497;MYFfamily:0.271598105639;RFX2..5_RFXANK_RFXAP:0.27049015992;BREu{core}:0.267948234333;TGIF1:0.25830777592;TOPORS:0.236454314244;POU1F1:0.207948078176;PATZ1:0.205828820453;EVI1:0.204427328695;MZF1:0.192838928686;PAX2:0.192161124273;POU2F1..3:0.186756568201;NR1H4:0.166258312313;SREBF1,2:0.165456205711;BACH2:0.159088101761;PAX5:0.156571670331;GZF1:0.138014756638;SPZ1:0.11561552717;PAX4:0.100842246157;ZNF384:0.08789958095;NFIL3:0.065946206646;FOSL2:0.0565128391858;NR6A1:0.0466522202154;ADNP_IRX_SIX_ZHX:0.0453463914079;ZNF143:0.0424773218398;REST:0.0393715048769;MTE{core}:0.0353321537581;HAND1,2:0.0195821474859;EP300:0.00711152040163;LMO2:0.00572693444382;ZFP161:-0.00052892540543;ATF4:-0.0235715445581;NHLH1,2:-0.0299900563291;ESRRA:-0.0396742327679;STAT1,3:-0.0428008518256;HLF:-0.050744435827;GFI1:-0.0583171111765;FOXA2:-0.0641334210367;ATF2:-0.064648928436;NRF1:-0.0685053669961;CUX2:-0.0817488791614;ELK1,4_GABP{A,B1}:-0.0933629927554;NFE2:-0.100140020225;CDX1,2,4:-0.107704593845;TAL1_TCF{3,4,12}:-0.119413200119;FOX{I1,J2}:-0.119552794925;SOX2:-0.136369913127;FOXD3:-0.13851256407;STAT5{A,B}:-0.150747571986;LHX3,4:-0.154033348133;HNF1A:-0.157209945406;GLI1..3:-0.171343636137;LEF1_TCF7_TCF7L1,2:-0.184168953186;TFAP4:-0.18626952354;ESR1:-0.186302165547;NFKB1_REL_RELA:-0.187474906408;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.207979722085;NANOG:-0.220809977724;HIF1A:-0.239729441103;GFI1B:-0.24197408429;PRRX1,2:-0.244714984416;FOXL1:-0.245406736281;RFX1:-0.262113901095;HNF4A_NR2F1,2:-0.271653747772;RREB1:-0.277151281072;KLF4:-0.282761439587;MEF2{A,B,C,D}:-0.288096984984;UFEwm:-0.314164530515;ARID5B:-0.320501329879;CREB1:-0.322130301378;NFATC1..3:-0.332273390586;ALX4:-0.337821941426;IKZF1:-0.33856552216;POU5F1:-0.347787658852;SRF:-0.357038540224;AHR_ARNT_ARNT2:-0.369201970507;ATF5_CREB3:-0.373347069232;NKX3-2:-0.401903062395;NKX6-1,2:-0.405188655607;FOXP3:-0.416799337952;IRF7:-0.426584414373;GATA6:-0.427484169038;NFIX:-0.427696481099;ZNF238:-0.434061274201;FOXP1:-0.442124924348;IKZF2:-0.456864920676;GATA4:-0.468030820867;ATF6:-0.5008774198;HMGA1,2:-0.502880925698;HOX{A5,B5}:-0.534722474256;NFE2L2:-0.582295991689;JUN:-0.58418459883;ALX1:-0.618921552226;ETS1,2:-0.648228131143;RUNX1..3:-0.664878545174;ZIC1..3:-0.693933015139;AIRE:-0.697384970942;PRDM1:-0.713183948089;OCT4_SOX2{dimer}:-0.714217515223;HSF1,2:-0.719656240096;SPI1:-0.725436001125;PAX6:-0.737049540762;SOX{8,9,10}:-0.77052670907;NKX3-1:-0.773041603018;IRF1,2:-0.774160506858;SPIB:-0.801453690178;ELF1,2,4:-0.821235072041;NFY{A,B,C}:-0.839874338285;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.843032893158;CRX:-0.866707965843;E2F1..5:-0.871082605512;STAT2,4,6:-0.886510565411;RXR{A,B,G}:-0.958327788955;RXRA_VDR{dimer}:-0.976310091561;GCM1,2:-0.986723946805;EBF1:-1.04772186796;POU3F1..4:-1.05859176945;HES1:-1.1152026276;PAX8:-1.15539297454;YY1:-1.15935950244;DMAP1_NCOR{1,2}_SMARC:-1.15938582468;XBP1:-1.16583175523;PAX3,7:-1.18289262307;NR5A1,2:-1.19070968;MYB:-1.21785623709;NKX2-2,8:-1.29443029124;NANOG{mouse}:-1.29626242675;HMX1:-1.30433281858;NFE2L1:-1.45412354473;PBX1:-1.54208487644;EN1,2:-1.5653278181;HOXA9_MEIS1:-1.71098124429
}}
}}

Revision as of 15:01, 21 March 2012


Name:salivary acinar cells, donor3
Species:
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Additional information
Sample information
strainNA
tissueparotid gland
dev stageNA
sexfemale
age80
cell typesalivary acinar cell
cell lineNA
companyNA
collaborationSwati Pradhan
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0



FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000066 (epithelial cell)
0000150 (glandular epithelial cell)
0000151 (secretory cell)
0000154 (protein secreting cell)
0000255 (eukaryotic cell)
0000548 (animal cell)
0000622 (acinar cell)
0002371 (somatic cell)
0002623 (acinar cell of salivary gland)

UBERON: Anatomy
0000033 (head)
0000061 (anatomical structure)
0000062 (organ)
0000077 (mixed endoderm/mesoderm-derived structure)
0000153 (anterior region of body)
0000161 (orifice)
0000165 (mouth)
0000166 (oral opening)
0000167 (oral cavity)
0000464 (anatomical space)
0000465 (material anatomical entity)
0000466 (immaterial anatomical entity)
0000467 (anatomical system)
0000468 (multi-cellular organism)
0000475 (organism subdivision)
0000477 (anatomical cluster)
0000479 (tissue)
0000480 (anatomical group)
0000481 (multi-tissue structure)
0000922 (embryo)
0000923 (germ layer)
0000925 (endoderm)
0000926 (mesoderm)
0000930 (stomodeum)
0001004 (respiratory system)
0001007 (digestive system)
0001041 (foregut)
0001044 (saliva-secreting gland)
0001062 (anatomical entity)
0001444 (subdivision of head)
0001555 (digestive tract)
0002050 (embryonic structure)
0002530 (gland)
0002532 (epiblast (generic))
0002553 (anatomical cavity)
0003104 (mesenchyme)
0003293 (gland of oral region)
0003294 (gland of foregut)
0003408 (gland of gut)
0004111 (anatomical conduit)
0004119 (endoderm-derived structure)
0004120 (mesoderm-derived structure)
0004185 (endodermal part of digestive tract)
0004921 (subdivision of digestive tract)
0005423 (developing anatomical structure)
0007026 (primitive gut)
0009142 (entire embryonic mesenchyme)

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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