FF:11773-123I9: Difference between revisions
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|has_quality= | |has_quality= | ||
|id=FF:11773-123I9 | |id=FF:11773-123I9 | ||
|is_a=EFO:0002091 | |is_a=EFO:0002091;;FF:0000278 | ||
|is_obsolete= | |||
|name=salivary acinar cells, donor3 | |name=salivary acinar cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 77: | Line 78: | ||
|sample_tissue=parotid gland | |sample_tissue=parotid gland | ||
|top_motifs=NKX2-1,4:2.39102036288;TP53:1.97026812037;TBX4,5:1.96446237573;TBP:1.87904125533;TFAP2{A,C}:1.81456088316;VSX1,2:1.79285558938;FOXO1,3,4:1.72384358136;PDX1:1.51626982239;ONECUT1,2:1.43598276799;SP1:1.41262423754;FOXN1:1.33026717077;SOX5:1.3270956095;BPTF:1.20289107698;MED-1{core}:1.18715645734;MAZ:1.15429214639;HOX{A4,D4}:1.11046197424;EGR1..3:1.07879735773;ZEB1:1.07580048374;SNAI1..3:1.04170016867;RORA:1.00790597006;TLX2:0.97050805003;SMAD1..7,9:0.959546837703;TEAD1:0.959048406442;bHLH_family:0.919272949611;HBP1_HMGB_SSRP1_UBTF:0.886490954537;TFCP2:0.883110879986;AR:0.856815595346;POU6F1:0.836886199689;NKX2-3_NKX2-5:0.794351843108;RBPJ:0.757055007345;ZNF148:0.722440929338;TEF:0.703916243156;CDC5L:0.691197714544;XCPE1{core}:0.675035545919;TFAP2B:0.665222338785;FOX{D1,D2}:0.661894316;HOX{A6,A7,B6,B7}:0.607506546534;ZBTB6:0.577611152051;PAX1,9:0.543693151422;GTF2A1,2:0.538390285201;FOS_FOS{B,L1}_JUN{B,D}:0.518640847538;FOX{F1,F2,J1}:0.496499855049;TLX1..3_NFIC{dimer}:0.492143233969;ZBTB16:0.483625358033;DBP:0.478168158037;PITX1..3:0.439925166629;SOX17:0.435693726995;MTF1:0.430799172056;MAFB:0.398260154428;MYOD1:0.398092060846;FOXM1:0.392526033748;ZNF423:0.375271394715;MYBL2:0.336681769151;NR3C1:0.333347944491;TFDP1:0.330632331268;PPARG:0.328729479287;CEBPA,B_DDIT3:0.32784173389;T:0.326315219952;HIC1:0.304405939201;FOXQ1:0.297969513885;GTF2I:0.286599282497;MYFfamily:0.271598105639;RFX2..5_RFXANK_RFXAP:0.27049015992;BREu{core}:0.267948234333;TGIF1:0.25830777592;TOPORS:0.236454314244;POU1F1:0.207948078176;PATZ1:0.205828820453;EVI1:0.204427328695;MZF1:0.192838928686;PAX2:0.192161124273;POU2F1..3:0.186756568201;NR1H4:0.166258312313;SREBF1,2:0.165456205711;BACH2:0.159088101761;PAX5:0.156571670331;GZF1:0.138014756638;SPZ1:0.11561552717;PAX4:0.100842246157;ZNF384:0.08789958095;NFIL3:0.065946206646;FOSL2:0.0565128391858;NR6A1:0.0466522202154;ADNP_IRX_SIX_ZHX:0.0453463914079;ZNF143:0.0424773218398;REST:0.0393715048769;MTE{core}:0.0353321537581;HAND1,2:0.0195821474859;EP300:0.00711152040163;LMO2:0.00572693444382;ZFP161:-0.00052892540543;ATF4:-0.0235715445581;NHLH1,2:-0.0299900563291;ESRRA:-0.0396742327679;STAT1,3:-0.0428008518256;HLF:-0.050744435827;GFI1:-0.0583171111765;FOXA2:-0.0641334210367;ATF2:-0.064648928436;NRF1:-0.0685053669961;CUX2:-0.0817488791614;ELK1,4_GABP{A,B1}:-0.0933629927554;NFE2:-0.100140020225;CDX1,2,4:-0.107704593845;TAL1_TCF{3,4,12}:-0.119413200119;FOX{I1,J2}:-0.119552794925;SOX2:-0.136369913127;FOXD3:-0.13851256407;STAT5{A,B}:-0.150747571986;LHX3,4:-0.154033348133;HNF1A:-0.157209945406;GLI1..3:-0.171343636137;LEF1_TCF7_TCF7L1,2:-0.184168953186;TFAP4:-0.18626952354;ESR1:-0.186302165547;NFKB1_REL_RELA:-0.187474906408;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.207979722085;NANOG:-0.220809977724;HIF1A:-0.239729441103;GFI1B:-0.24197408429;PRRX1,2:-0.244714984416;FOXL1:-0.245406736281;RFX1:-0.262113901095;HNF4A_NR2F1,2:-0.271653747772;RREB1:-0.277151281072;KLF4:-0.282761439587;MEF2{A,B,C,D}:-0.288096984984;UFEwm:-0.314164530515;ARID5B:-0.320501329879;CREB1:-0.322130301378;NFATC1..3:-0.332273390586;ALX4:-0.337821941426;IKZF1:-0.33856552216;POU5F1:-0.347787658852;SRF:-0.357038540224;AHR_ARNT_ARNT2:-0.369201970507;ATF5_CREB3:-0.373347069232;NKX3-2:-0.401903062395;NKX6-1,2:-0.405188655607;FOXP3:-0.416799337952;IRF7:-0.426584414373;GATA6:-0.427484169038;NFIX:-0.427696481099;ZNF238:-0.434061274201;FOXP1:-0.442124924348;IKZF2:-0.456864920676;GATA4:-0.468030820867;ATF6:-0.5008774198;HMGA1,2:-0.502880925698;HOX{A5,B5}:-0.534722474256;NFE2L2:-0.582295991689;JUN:-0.58418459883;ALX1:-0.618921552226;ETS1,2:-0.648228131143;RUNX1..3:-0.664878545174;ZIC1..3:-0.693933015139;AIRE:-0.697384970942;PRDM1:-0.713183948089;OCT4_SOX2{dimer}:-0.714217515223;HSF1,2:-0.719656240096;SPI1:-0.725436001125;PAX6:-0.737049540762;SOX{8,9,10}:-0.77052670907;NKX3-1:-0.773041603018;IRF1,2:-0.774160506858;SPIB:-0.801453690178;ELF1,2,4:-0.821235072041;NFY{A,B,C}:-0.839874338285;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.843032893158;CRX:-0.866707965843;E2F1..5:-0.871082605512;STAT2,4,6:-0.886510565411;RXR{A,B,G}:-0.958327788955;RXRA_VDR{dimer}:-0.976310091561;GCM1,2:-0.986723946805;EBF1:-1.04772186796;POU3F1..4:-1.05859176945;HES1:-1.1152026276;PAX8:-1.15539297454;YY1:-1.15935950244;DMAP1_NCOR{1,2}_SMARC:-1.15938582468;XBP1:-1.16583175523;PAX3,7:-1.18289262307;NR5A1,2:-1.19070968;MYB:-1.21785623709;NKX2-2,8:-1.29443029124;NANOG{mouse}:-1.29626242675;HMX1:-1.30433281858;NFE2L1:-1.45412354473;PBX1:-1.54208487644;EN1,2:-1.5653278181;HOXA9_MEIS1:-1.71098124429 | |top_motifs=NKX2-1,4:2.39102036288;TP53:1.97026812037;TBX4,5:1.96446237573;TBP:1.87904125533;TFAP2{A,C}:1.81456088316;VSX1,2:1.79285558938;FOXO1,3,4:1.72384358136;PDX1:1.51626982239;ONECUT1,2:1.43598276799;SP1:1.41262423754;FOXN1:1.33026717077;SOX5:1.3270956095;BPTF:1.20289107698;MED-1{core}:1.18715645734;MAZ:1.15429214639;HOX{A4,D4}:1.11046197424;EGR1..3:1.07879735773;ZEB1:1.07580048374;SNAI1..3:1.04170016867;RORA:1.00790597006;TLX2:0.97050805003;SMAD1..7,9:0.959546837703;TEAD1:0.959048406442;bHLH_family:0.919272949611;HBP1_HMGB_SSRP1_UBTF:0.886490954537;TFCP2:0.883110879986;AR:0.856815595346;POU6F1:0.836886199689;NKX2-3_NKX2-5:0.794351843108;RBPJ:0.757055007345;ZNF148:0.722440929338;TEF:0.703916243156;CDC5L:0.691197714544;XCPE1{core}:0.675035545919;TFAP2B:0.665222338785;FOX{D1,D2}:0.661894316;HOX{A6,A7,B6,B7}:0.607506546534;ZBTB6:0.577611152051;PAX1,9:0.543693151422;GTF2A1,2:0.538390285201;FOS_FOS{B,L1}_JUN{B,D}:0.518640847538;FOX{F1,F2,J1}:0.496499855049;TLX1..3_NFIC{dimer}:0.492143233969;ZBTB16:0.483625358033;DBP:0.478168158037;PITX1..3:0.439925166629;SOX17:0.435693726995;MTF1:0.430799172056;MAFB:0.398260154428;MYOD1:0.398092060846;FOXM1:0.392526033748;ZNF423:0.375271394715;MYBL2:0.336681769151;NR3C1:0.333347944491;TFDP1:0.330632331268;PPARG:0.328729479287;CEBPA,B_DDIT3:0.32784173389;T:0.326315219952;HIC1:0.304405939201;FOXQ1:0.297969513885;GTF2I:0.286599282497;MYFfamily:0.271598105639;RFX2..5_RFXANK_RFXAP:0.27049015992;BREu{core}:0.267948234333;TGIF1:0.25830777592;TOPORS:0.236454314244;POU1F1:0.207948078176;PATZ1:0.205828820453;EVI1:0.204427328695;MZF1:0.192838928686;PAX2:0.192161124273;POU2F1..3:0.186756568201;NR1H4:0.166258312313;SREBF1,2:0.165456205711;BACH2:0.159088101761;PAX5:0.156571670331;GZF1:0.138014756638;SPZ1:0.11561552717;PAX4:0.100842246157;ZNF384:0.08789958095;NFIL3:0.065946206646;FOSL2:0.0565128391858;NR6A1:0.0466522202154;ADNP_IRX_SIX_ZHX:0.0453463914079;ZNF143:0.0424773218398;REST:0.0393715048769;MTE{core}:0.0353321537581;HAND1,2:0.0195821474859;EP300:0.00711152040163;LMO2:0.00572693444382;ZFP161:-0.00052892540543;ATF4:-0.0235715445581;NHLH1,2:-0.0299900563291;ESRRA:-0.0396742327679;STAT1,3:-0.0428008518256;HLF:-0.050744435827;GFI1:-0.0583171111765;FOXA2:-0.0641334210367;ATF2:-0.064648928436;NRF1:-0.0685053669961;CUX2:-0.0817488791614;ELK1,4_GABP{A,B1}:-0.0933629927554;NFE2:-0.100140020225;CDX1,2,4:-0.107704593845;TAL1_TCF{3,4,12}:-0.119413200119;FOX{I1,J2}:-0.119552794925;SOX2:-0.136369913127;FOXD3:-0.13851256407;STAT5{A,B}:-0.150747571986;LHX3,4:-0.154033348133;HNF1A:-0.157209945406;GLI1..3:-0.171343636137;LEF1_TCF7_TCF7L1,2:-0.184168953186;TFAP4:-0.18626952354;ESR1:-0.186302165547;NFKB1_REL_RELA:-0.187474906408;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.207979722085;NANOG:-0.220809977724;HIF1A:-0.239729441103;GFI1B:-0.24197408429;PRRX1,2:-0.244714984416;FOXL1:-0.245406736281;RFX1:-0.262113901095;HNF4A_NR2F1,2:-0.271653747772;RREB1:-0.277151281072;KLF4:-0.282761439587;MEF2{A,B,C,D}:-0.288096984984;UFEwm:-0.314164530515;ARID5B:-0.320501329879;CREB1:-0.322130301378;NFATC1..3:-0.332273390586;ALX4:-0.337821941426;IKZF1:-0.33856552216;POU5F1:-0.347787658852;SRF:-0.357038540224;AHR_ARNT_ARNT2:-0.369201970507;ATF5_CREB3:-0.373347069232;NKX3-2:-0.401903062395;NKX6-1,2:-0.405188655607;FOXP3:-0.416799337952;IRF7:-0.426584414373;GATA6:-0.427484169038;NFIX:-0.427696481099;ZNF238:-0.434061274201;FOXP1:-0.442124924348;IKZF2:-0.456864920676;GATA4:-0.468030820867;ATF6:-0.5008774198;HMGA1,2:-0.502880925698;HOX{A5,B5}:-0.534722474256;NFE2L2:-0.582295991689;JUN:-0.58418459883;ALX1:-0.618921552226;ETS1,2:-0.648228131143;RUNX1..3:-0.664878545174;ZIC1..3:-0.693933015139;AIRE:-0.697384970942;PRDM1:-0.713183948089;OCT4_SOX2{dimer}:-0.714217515223;HSF1,2:-0.719656240096;SPI1:-0.725436001125;PAX6:-0.737049540762;SOX{8,9,10}:-0.77052670907;NKX3-1:-0.773041603018;IRF1,2:-0.774160506858;SPIB:-0.801453690178;ELF1,2,4:-0.821235072041;NFY{A,B,C}:-0.839874338285;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.843032893158;CRX:-0.866707965843;E2F1..5:-0.871082605512;STAT2,4,6:-0.886510565411;RXR{A,B,G}:-0.958327788955;RXRA_VDR{dimer}:-0.976310091561;GCM1,2:-0.986723946805;EBF1:-1.04772186796;POU3F1..4:-1.05859176945;HES1:-1.1152026276;PAX8:-1.15539297454;YY1:-1.15935950244;DMAP1_NCOR{1,2}_SMARC:-1.15938582468;XBP1:-1.16583175523;PAX3,7:-1.18289262307;NR5A1,2:-1.19070968;MYB:-1.21785623709;NKX2-2,8:-1.29443029124;NANOG{mouse}:-1.29626242675;HMX1:-1.30433281858;NFE2L1:-1.45412354473;PBX1:-1.54208487644;EN1,2:-1.5653278181;HOXA9_MEIS1:-1.71098124429 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Revision as of 22:47, 27 June 2012
| Name: | salivary acinar cells, donor3 |
|---|---|
| Species: | |
| Library ID: | {{{library_id}}} |
| Sample type: | {{{sample_category}}} |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002321 (embryonic cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000150 (glandular epithelial cell)
0000154 (protein secreting cell)
0000255 (eukaryotic cell)
0000622 (acinar cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002623 (acinar cell of salivary gland)
0000223 (endodermal cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001044 (saliva-secreting gland)
0002530 (gland)
0000033 (head)
0000926 (mesoderm)
0000479 (tissue)
0001007 (digestive system)
0000077 (mixed endoderm/mesoderm-derived structure)
0000466 (immaterial anatomical entity)
0004121 (ectoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0004119 (endoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000480 (anatomical group)
0000923 (germ layer)
0002050 (embryonic structure)
0004921 (subdivision of digestive tract)
0000161 (orifice)
0005423 (developing anatomical structure)
0001444 (subdivision of head)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000481 (multi-tissue structure)
0000467 (anatomical system)
0001062 (anatomical entity)
0005291 (embryonic tissue)
0003102 (surface structure)
0000078 (mixed ectoderm/mesoderm/endoderm-derived structure)
0003293 (gland of oral region)
0003294 (gland of foregut)
0010047 (oral gland)
0002365 (exocrine gland)
0003104 (mesenchyme)
0000464 (anatomical space)
0000925 (endoderm)
0003408 (gland of gut)
0006598 (presumptive structure)
0004185 (endodermal part of digestive tract)
0002532 (epiblast (generic))
0001555 (digestive tract)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000924 (ectoderm)
0000165 (mouth)
0007026 (primitive gut)
0001041 (foregut)
0000166 (oral opening)
0000167 (oral cavity)
0002330 (exocrine system)
0009142 (entire embryonic mesenchyme)
0000930 (stomodeum)
0006601 (presumptive ectoderm)
0006595 (presumptive endoderm)
0006603 (presumptive mesoderm)
FF: FANTOM5
NA
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
