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MCL coexpression mm9:1735: Difference between revisions

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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.569559971642581,0.194002013165964,0.166764232955903,0.180026585552633,0.0642873521037868,0.508611788039832,0.548412965242472,0,0.0800761525331175,0,0.289229082821354,0.349088981842632,0.153628809860867,0.0354470656487682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302481506279645,0.501892311714437,0.428210788219066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0317017435824471,0,0.198582584603541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0514097768499148,0,0,0,0,0,0.171689969376673,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0609639314262262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0623063220167371,0.0907988888537607,0,0,0.0661618130246221,0.0660154575426048,0.121978258518602,0,0,0.0546921007390138,0,0,0,0,0,0.0906941294286938,0,0,0,0,0,0,0.0973736644748266,0,0,0,0,0,0,0,0,0.0805006992779881,0,0.0570083229196787,0.0754409701586123,0.112343641145276,0.0633328814307688,0.0505333231410966,0,0,0,0,0,0,0,0,0.0652566657696677,0,0.58831251521849,0,0,0,0,0,0.0736278867910527,0,0,0.0680912293502604,0.091558018055706,0.0672592169170953,0,0.143098306652819,0,0.086880916817156,0,0.123108665731713,0.0691813633419548,0.156533152932051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0661577744756082,0,0,0,0,0,0,0,0,0,0,0,0.0685090053637401,0,0,0.0749511157581746,0.055643654597214,0,0,0,0,0,0,0,0.0445418537893845,0.0824580172145032,0,0,0,0,0,0,0,0,0,0,0,0.0677982110636083,0.0481920468563092,0,0,0,0,0.119259559192106,0,0,0,0.0715236385554987,0.0787037500278776,0.170491067385816,0.112396870443577,0.147325594122017,0.115553010147073,0.205463431268847,0.142962157747731,0.197906332095909,0.130536619167171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0242538736058389,0,0.0476191773904887,0,0,0,0,0,0.092873634605593,0.0589368614163519,0,0.0352754493378881,0,0,0.0553034373508932,0.193442483447008,0,0,0,0,0,0,0,0,0,0,0
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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000791!1.69e-13!9;CL:0000789!1.69e-13!9;CL:0002420!1.69e-13!9;CL:0002419!1.69e-13!9;CL:0000790!1.69e-13!9;CL:0000624!4.60e-12!8;CL:0000838!6.11e-12!12;CL:0000542!8.40e-11!13;CL:0000051!8.40e-11!13;CL:0000084!1.36e-10!11;CL:0000827!1.36e-10!11;CL:0002031!2.75e-09!25;CL:0000893!3.92e-09!6;CL:0002489!3.92e-09!6;CL:0000898!3.92e-09!6;CL:0000809!3.92e-09!6;CL:0000810!3.92e-09!6;CL:0000895!3.92e-09!6;CL:0000808!3.92e-09!6;CL:0000894!3.92e-09!6;CL:0000806!3.92e-09!6;CL:0000807!3.92e-09!6;CL:0000805!3.92e-09!6;CL:0002425!3.92e-09!6;CL:0002436!3.92e-09!6;CL:0002427!3.92e-09!6;CL:0002428!3.92e-09!6;CL:0002429!3.92e-09!6;CL:0002433!3.92e-09!6;CL:0002431!3.92e-09!6;CL:0002432!3.92e-09!6;CL:0002242!2.94e-08!16;CL:0000738!1.29e-07!17;CL:0002087!1.29e-07!17
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000065!3.05e-17!41;UBERON:0001004!1.22e-16!42;UBERON:0004177!3.81e-15!29;UBERON:0005057!3.81e-15!29;UBERON:0002370!5.86e-15!23;UBERON:0000974!5.86e-15!23;UBERON:0004807!5.86e-15!23;UBERON:0005058!5.86e-15!23;UBERON:0003351!5.86e-15!23;UBERON:0009113!5.86e-15!23;UBERON:0003295!5.86e-15!23;UBERON:0009722!5.86e-15!23;UBERON:0005562!5.86e-15!23;UBERON:0007690!5.86e-15!23;UBERON:0006562!4.07e-14!24;UBERON:0003408!4.07e-14!24;UBERON:0001557!4.07e-14!24;UBERON:0001042!4.07e-14!24;UBERON:0008814!4.07e-14!24;UBERON:0009145!4.07e-14!24;UBERON:0000077!4.31e-13!35;UBERON:0002390!1.61e-12!45;UBERON:0003061!1.61e-12!45;UBERON:0000072!5.63e-12!27;UBERON:0001041!2.20e-11!80;UBERON:0002193!2.70e-11!48;UBERON:0002405!2.70e-11!48;UBERON:0005911!6.06e-10!69;UBERON:0007811!9.71e-09!36;UBERON:0003081!2.94e-08!87;UBERON:0000063!4.03e-08!35;UBERON:0001048!2.99e-07!134
}}
}}

Revision as of 17:21, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr19:6343782..6343793,+p6@Map4k2
Mm9::chr6:48609455..48609465,+p@chr6:48609455..48609465
+
Mm9::chr6:48640678..48640690,+p@chr6:48640678..48640690
+
Mm9::chr6:48641057..48641068,+p@chr6:48641057..48641068
+
Mm9::chr9:32562042..32562046,+p@chr9:32562042..32562046
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
mature alpha-beta T cell1.69e-139
alpha-beta T cell1.69e-139
immature T cell1.69e-139
mature T cell1.69e-139
immature alpha-beta T cell1.69e-139
CD4-positive, alpha-beta T cell4.60e-128
lymphoid lineage restricted progenitor cell6.11e-1212
lymphocyte8.40e-1113
common lymphoid progenitor8.40e-1113
T cell1.36e-1011
pro-T cell1.36e-1011
hematopoietic lineage restricted progenitor cell2.75e-0925
thymocyte3.92e-096
double negative thymocyte3.92e-096
naive T cell3.92e-096
double-positive, alpha-beta thymocyte3.92e-096
CD4-positive, alpha-beta thymocyte3.92e-096
naive thymus-derived CD4-positive, alpha-beta T cell3.92e-096
DN4 thymocyte3.92e-096
DN1 thymic pro-T cell3.92e-096
DN2 thymocyte3.92e-096
DN3 thymocyte3.92e-096
immature single positive thymocyte3.92e-096
early T lineage precursor3.92e-096
mature CD4 single-positive thymocyte3.92e-096
resting double-positive thymocyte3.92e-096
double-positive blast3.92e-096
CD69-positive double-positive thymocyte3.92e-096
CD69-positive, CD4-positive single-positive thymocyte3.92e-096
CD4-positive, CD8-intermediate double-positive thymocyte3.92e-096
CD24-positive, CD4 single-positive thymocyte3.92e-096
nucleate cell2.94e-0816
leukocyte1.29e-0717
nongranular leukocyte1.29e-0717

Uber Anatomy
Ontology termp-valuen
respiratory tract3.05e-1741
respiratory system1.22e-1642
hemopoietic organ3.81e-1529
immune organ3.81e-1529
thymus5.86e-1523
neck5.86e-1523
respiratory system epithelium5.86e-1523
hemolymphoid system gland5.86e-1523
pharyngeal epithelium5.86e-1523
thymic region5.86e-1523
pharyngeal gland5.86e-1523
entire pharyngeal arch endoderm5.86e-1523
thymus primordium5.86e-1523
early pharyngeal endoderm5.86e-1523
pharynx4.07e-1424
gland of gut4.07e-1424
upper respiratory tract4.07e-1424
chordate pharynx4.07e-1424
pharyngeal arch system4.07e-1424
pharyngeal region of foregut4.07e-1424
mixed endoderm/mesoderm-derived structure4.31e-1335
hematopoietic system1.61e-1245
blood island1.61e-1245
segment of respiratory tract5.63e-1227
foregut2.20e-1180
hemolymphoid system2.70e-1148
immune system2.70e-1148
endo-epithelium6.06e-1069
craniocervical region9.71e-0936
lateral plate mesoderm2.94e-0887
organ segment4.03e-0835
primordium2.99e-07134


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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