Personal tools

Coexpression cluster:C4332: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 8: Line 8:
|tf_chipseq_enrich=CCNT2#905;3:6.33620157696263:0.00393075003576489:0.0190675152338713!CTCF#10664;3:5.36025637307503:0.006492509252767:0.0280565695899426!E2F4#1874;3:12.6680603152844:0.000491798700629898:0.00438175776276113!EBF1#1879;3:8.906466846569:0.0014152328356098:0.00917761577884212!ELF1#1997;3:4.25809795880754:0.0129517987505461:0.0463943239713364!ETS1#2113;3:9.72876092220234:0.00108584009258484:0.00763972335148664!GTF2B#2959;3:31.9438299343242:3.06634405746243e-05:0.000628919691707225!HMGN3#9324;3:8.17854772335059:0.00182776694216421:0.0108968005293235!IRF1#3659;3:7.6371637535639:0.00224469274729724:0.012847781324874!JUND#3727;3:6.99466394187103:0.00292184504273499:0.0157263746865698!MYC#4609;3:5.2222818716094:0.00702084375574015:0.0295462747715576!SMC3#9126;3:15.0449328449328:0.000293582542037187:0.00310150385472605!SP1#6667;3:5.6983813781409:0.00540396270171217:0.0247363455734624!SPI1#6688;3:8.20432350852273:0.00181059318941052:0.0109279092758232!TCF12#6938;3:10.6344649021864:0.000831352399020207:0.00630633448585643!THAP1#55145;2:20.9127630685675:0.00298344741373694:0.0158738735770173!YY1#7528;3:4.91117074985386:0.00844145534180826:0.0330478372546805!ZBTB7A#51341;3:7.3519093078759:0.00251625586028227:0.0140629981159105!ZNF143#7702;3:13.5008765522279:0.000406280496299717:0.0039003151717112!ZNF263#10127;3:8.22184163701068:0.00179904392556587:0.0109755446312386
|tf_chipseq_enrich=CCNT2#905;3:6.33620157696263:0.00393075003576489:0.0190675152338713!CTCF#10664;3:5.36025637307503:0.006492509252767:0.0280565695899426!E2F4#1874;3:12.6680603152844:0.000491798700629898:0.00438175776276113!EBF1#1879;3:8.906466846569:0.0014152328356098:0.00917761577884212!ELF1#1997;3:4.25809795880754:0.0129517987505461:0.0463943239713364!ETS1#2113;3:9.72876092220234:0.00108584009258484:0.00763972335148664!GTF2B#2959;3:31.9438299343242:3.06634405746243e-05:0.000628919691707225!HMGN3#9324;3:8.17854772335059:0.00182776694216421:0.0108968005293235!IRF1#3659;3:7.6371637535639:0.00224469274729724:0.012847781324874!JUND#3727;3:6.99466394187103:0.00292184504273499:0.0157263746865698!MYC#4609;3:5.2222818716094:0.00702084375574015:0.0295462747715576!SMC3#9126;3:15.0449328449328:0.000293582542037187:0.00310150385472605!SP1#6667;3:5.6983813781409:0.00540396270171217:0.0247363455734624!SPI1#6688;3:8.20432350852273:0.00181059318941052:0.0109279092758232!TCF12#6938;3:10.6344649021864:0.000831352399020207:0.00630633448585643!THAP1#55145;2:20.9127630685675:0.00298344741373694:0.0158738735770173!YY1#7528;3:4.91117074985386:0.00844145534180826:0.0330478372546805!ZBTB7A#51341;3:7.3519093078759:0.00251625586028227:0.0140629981159105!ZNF143#7702;3:13.5008765522279:0.000406280496299717:0.0039003151717112!ZNF263#10127;3:8.22184163701068:0.00179904392556587:0.0109755446312386
|tfbs_overrepresentation=0.147255,0.0586687,5.24277e-05,0.0477154,0.199763,0.287811,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.0907212,0.143747,0.0933697,0.00169471,0.114046,0.0180314,0.208242,0.0665252,0.0844722,3.84895e-06,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.167053,0.378921,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.00472557,0.226912,0.0425,0.114846,0.0472875,0.0347684,0.064341,0.209032,0.000428223,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.21992,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.269326,0.0177901,0.0339971,0.149552,0.0176855,0.005305,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,5.12341e-06,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,0.12972,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.112671,0.00112574,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.00664287,0.169057,0.164202,0.100942,0.062995,0.10299,0.14193,0.37245,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,0.569726,0.0133328,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.182472,0.00958651,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.21774,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.254773,0.446759,0.0865903,0.0380459,0.130174,0.584917,0.00909613,0.782949,0.00381937,0.00163772,0.00210428,0.00690237,0.335423,0.0185583,0.261553,0.446302,0.373681,0.053682,0.49143,0.330703,0.395854,0.329568,0.53472,0.248224,0.271958,0.292154,0.405773,0.0921263,0.00204348,0.597171,0.187251,0.362792,0.181715,0.423979,0.109988,0.330894,0.218329,0.107929,0.376924,0.00381454,1.32381e-09,0.528324,0.168255,0.370782,0.0173702,0.142924,0.253571,0.276829,0.301787,0.481778,0.316882,0.223503,0.503224,0.236436,0.283727,0.314747,0.0116619,0.291709,0.00324826,0.000269721,0.416816,0.0478086,0.476744,0.439556,0.0807167,0.57762,0.00280546,0.18237,6.93298e-07,2.05465e-06,0.0512465,0.275351,0.236471,0.185661,0.0684159,0.0427964,0.270984,0.625945,0.155555,0.513852,0.522083,0.248634,0.281576,0.135034,0.163244,0.0670502,0.0730934,0.184794,0.0641718,0.00012837,0.0583074,0.0002295,0.671377,0.188159,0.551561,0.00324632,0.218623,0.312808,0.00743804,0.0451077,0.0747529,0.229003,1.6473e-08,0.0129683,0.154921,0.294698,0.0671437,0.00441816,0.0465597,0.000749204,4.0585e-08,0.278044,0.000315884,0.108847,0.228096,0.336314,0.19763,0.15631,2.87559e-06,0.421464,0.141711,0.420626,0.516462,2.91338e-09,0.335105,0.144809,0.145539,0.385517,0.001421,0.119597,0.459928,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.546222,0.293698,0.284593,0.343734,0.306556,0.305777,0.601433,0.155572,0.169823,0.284629,0.00375279,0.359455,0.226257,0.405955,0.0175765,0.0760312,0.130283,1.63525e-05,0.206222,0.03988,0.284166,0.437176,0.269226,0.339277,0.0014397,0.281425,0.141758,0.455379,0.00680512,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.524997,0.000539973,0.347298,0.539392,0.34988,0.475069,0.404569,0.6408,0.262389,0.000642687,0.0697683,0.0556835,0.00138994,0.0779981,0.0575676,0.144322,0.223391,0.00166084,0.000351837,2.73054e-06,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.00427764,0.0627924,0.381386,0.0179103,0.303939,1.3117e-06,0.390395,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.346372,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.332809,0.0205132,0.132201,0.188694,0.0481795,0.199971,1.3111e-06,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.0160457,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.00662343,0.137332,0.0145999,0.0656973,0.211746,0.0021409,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,0.0791124,0.0330727,0.0694567,0.219556,0.0394698,0.0596469,0.103658,0.122476,0.108872,0.11002,0.26144,0.0286025,1.75123e-07,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.0353101,0.217069,0.190048,0.131088,0.000173683,0.237101,0.0458068,0.0761239,0.172491,0.0818785,0.182701,0.0637246,0.147698,0.141463,0.167267,0.140622,0.0889592,0.309588,0.0458479,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.109194,0.00864322,0.131452,0.112518,0.448776,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.277091,0.00264443,0.0926491,0.21727,0.289306,0.119215,0.192475,0.177967,0.547859,0.057571,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.00525614,0.0355833,0.125606,0.175094,1.65828e-11,6.6291e-06,0.206454,0.218192,0.108277,0.0673484,0.108748,0.00124112,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.00232088,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.00500888,0.152372,0.194941,0.218271,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.191335,0.0116284,4.25963e-09,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.0050797,0.11903,0.0838874,0.0622625,0.113145,0.112651,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.166967,0.188651,0.00340589,0.184948,0.156261,4.45701e-05,0.511859,0.0590944,0.247324,0.178389,0.218229,0.231073,0.0161946,8.08672e-06,0.0360851,0.0168763,0.131093,0.0434602,0.000441769,0.103051,0.0115948,0.449036,0.0973145,0.231447,0.544776,0.43956,0.37006,0.10748,0.448797,0.197484,0.396996,0.36145,0.0966095,0.381071,0.580441,0.643768,0.432035,0.0411943,0.0886602,0.48809,0.50058,0.443185,0.522904,0.0608227,5.69054e-05,0.227104,0.00667974,7.77002e-06,0.00161115,0.284625,0.0344717,0.000187838,9.48418e-06,0.0465139,0.164197,0.128922,0.000422595,0.574635,0.478174,0.336276,0.468444,0.258219,0.446557,0.243383,0.00448654,0.390974,1.84416e-08,0.029557,0.161598,2.65641e-07,0.644754,0.496032,7.35021e-06,0.37357,0.00500957,0.477353,4.90999e-06,2.67609e-08,0.00415823,0.20342,0.200493,0.20558,0.300504,0.25656,0.425963,0.349197,0.0131573,0.156104,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.00246909,0.120226,0.28424,0.562405,0.314429,0.181415,0.282286,0.194707,0.0727621,0.408413,0.516511,0.322213,0.00480191,0.33942,5.7752e-05,0.387276,0.522605,1.69903e-14,0.537348,0.222037,0.416621,0.416292,0.462712,1.39925e-06,0.057399,0.204817,0.122646,0.138871,0.000165333,0.166905,0.19783,0.0833851,0.00691922,0.140384,0.175199,0.332919,0.373557,0.523625,0.408861,0.365487,0.534741,0.0140668,0.363192,0.236011,0.203486,0.273398,0.0816179,0.0223007,0.351067,0.275347,0.019895,0.305885,0.241132,0.371414,0.30666,0.303709,4.9464e-08,0.0135408,0.508064,0.250964,0.383276,0.0243456,0.156714,0.220231,0.509064,0.196976,0.00136659,0.463751,0.00258603,0.307334,0.127092,0.283463,0.0517073,0.472935,0.399569,0.273281,0.0780405,0.275089,0.384593,0.138622,0.359231,0.339729,0.197805,0.608187,0.0870376,0.332774,0.00107377,0.299887,1.06855e-08,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.378361,0.255516,0.20753,0.0224033,0.179412,0.193601,0.220904,0.222977,0.341681,0.310674,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.00178627,0.247588,0.00219731,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.30793,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.203781,0.00193951,0.207559,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.0159159,0.0215816,0.139785,0.197112,0.0315594,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.202137,0.310405,0.0437875,0.218161,0.0822373,0.0219487,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.187731,0.233626,0.0192232,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.00229305,0.089609,0.0367455,0.000455851,0.204393,0.295769,0.286691,0.347036,0.141729,0.0381402,0.255956,0.200105,0.227491,0.00569858,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.28689,0.236464,0.325148,0.115817,0.218052,0.223831,0.11528,0.194982,0.190993,0.281727,0.0445413,0.249955,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.171683,0.158847,0.271275,0.071111,0.270604,0.101021,0.222548,0.175934,0.157274,0.215705,0.252796,0.205954,0.361435
|tfbs_overrepresentation=0.147255,0.0586687,5.24277e-05,0.0477154,0.199763,0.287811,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.0907212,0.143747,0.0933697,0.00169471,0.114046,0.0180314,0.208242,0.0665252,0.0844722,3.84895e-06,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.167053,0.378921,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.00472557,0.226912,0.0425,0.114846,0.0472875,0.0347684,0.064341,0.209032,0.000428223,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.21992,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.269326,0.0177901,0.0339971,0.149552,0.0176855,0.005305,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,5.12341e-06,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,0.12972,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.112671,0.00112574,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.00664287,0.169057,0.164202,0.100942,0.062995,0.10299,0.14193,0.37245,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,0.569726,0.0133328,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.182472,0.00958651,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.21774,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.254773,0.446759,0.0865903,0.0380459,0.130174,0.584917,0.00909613,0.782949,0.00381937,0.00163772,0.00210428,0.00690237,0.335423,0.0185583,0.261553,0.446302,0.373681,0.053682,0.49143,0.330703,0.395854,0.329568,0.53472,0.248224,0.271958,0.292154,0.405773,0.0921263,0.00204348,0.597171,0.187251,0.362792,0.181715,0.423979,0.109988,0.330894,0.218329,0.107929,0.376924,0.00381454,1.32381e-09,0.528324,0.168255,0.370782,0.0173702,0.142924,0.253571,0.276829,0.301787,0.481778,0.316882,0.223503,0.503224,0.236436,0.283727,0.314747,0.0116619,0.291709,0.00324826,0.000269721,0.416816,0.0478086,0.476744,0.439556,0.0807167,0.57762,0.00280546,0.18237,6.93298e-07,2.05465e-06,0.0512465,0.275351,0.236471,0.185661,0.0684159,0.0427964,0.270984,0.625945,0.155555,0.513852,0.522083,0.248634,0.281576,0.135034,0.163244,0.0670502,0.0730934,0.184794,0.0641718,0.00012837,0.0583074,0.0002295,0.671377,0.188159,0.551561,0.00324632,0.218623,0.312808,0.00743804,0.0451077,0.0747529,0.229003,1.6473e-08,0.0129683,0.154921,0.294698,0.0671437,0.00441816,0.0465597,0.000749204,4.0585e-08,0.278044,0.000315884,0.108847,0.228096,0.336314,0.19763,0.15631,2.87559e-06,0.421464,0.141711,0.420626,0.516462,2.91338e-09,0.335105,0.144809,0.145539,0.385517,0.001421,0.119597,0.459928,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.546222,0.293698,0.284593,0.343734,0.306556,0.305777,0.601433,0.155572,0.169823,0.284629,0.00375279,0.359455,0.226257,0.405955,0.0175765,0.0760312,0.130283,1.63525e-05,0.206222,0.03988,0.284166,0.437176,0.269226,0.339277,0.0014397,0.281425,0.141758,0.455379,0.00680512,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.524997,0.000539973,0.347298,0.539392,0.34988,0.475069,0.404569,0.6408,0.262389,0.000642687,0.0697683,0.0556835,0.00138994,0.0779981,0.0575676,0.144322,0.223391,0.00166084,0.000351837,2.73054e-06,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.00427764,0.0627924,0.381386,0.0179103,0.303939,1.3117e-06,0.390395,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.346372,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.332809,0.0205132,0.132201,0.188694,0.0481795,0.199971,1.3111e-06,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.0160457,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.00662343,0.137332,0.0145999,0.0656973,0.211746,0.0021409,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,0.0791124,0.0330727,0.0694567,0.219556,0.0394698,0.0596469,0.103658,0.122476,0.108872,0.11002,0.26144,0.0286025,1.75123e-07,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.0353101,0.217069,0.190048,0.131088,0.000173683,0.237101,0.0458068,0.0761239,0.172491,0.0818785,0.182701,0.0637246,0.147698,0.141463,0.167267,0.140622,0.0889592,0.309588,0.0458479,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.109194,0.00864322,0.131452,0.112518,0.448776,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.277091,0.00264443,0.0926491,0.21727,0.289306,0.119215,0.192475,0.177967,0.547859,0.057571,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.00525614,0.0355833,0.125606,0.175094,1.65828e-11,6.6291e-06,0.206454,0.218192,0.108277,0.0673484,0.108748,0.00124112,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.00232088,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.00500888,0.152372,0.194941,0.218271,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.191335,0.0116284,4.25963e-09,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.0050797,0.11903,0.0838874,0.0622625,0.113145,0.112651,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.166967,0.188651,0.00340589,0.184948,0.156261,4.45701e-05,0.511859,0.0590944,0.247324,0.178389,0.218229,0.231073,0.0161946,8.08672e-06,0.0360851,0.0168763,0.131093,0.0434602,0.000441769,0.103051,0.0115948,0.449036,0.0973145,0.231447,0.544776,0.43956,0.37006,0.10748,0.448797,0.197484,0.396996,0.36145,0.0966095,0.381071,0.580441,0.643768,0.432035,0.0411943,0.0886602,0.48809,0.50058,0.443185,0.522904,0.0608227,5.69054e-05,0.227104,0.00667974,7.77002e-06,0.00161115,0.284625,0.0344717,0.000187838,9.48418e-06,0.0465139,0.164197,0.128922,0.000422595,0.574635,0.478174,0.336276,0.468444,0.258219,0.446557,0.243383,0.00448654,0.390974,1.84416e-08,0.029557,0.161598,2.65641e-07,0.644754,0.496032,7.35021e-06,0.37357,0.00500957,0.477353,4.90999e-06,2.67609e-08,0.00415823,0.20342,0.200493,0.20558,0.300504,0.25656,0.425963,0.349197,0.0131573,0.156104,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.00246909,0.120226,0.28424,0.562405,0.314429,0.181415,0.282286,0.194707,0.0727621,0.408413,0.516511,0.322213,0.00480191,0.33942,5.7752e-05,0.387276,0.522605,1.69903e-14,0.537348,0.222037,0.416621,0.416292,0.462712,1.39925e-06,0.057399,0.204817,0.122646,0.138871,0.000165333,0.166905,0.19783,0.0833851,0.00691922,0.140384,0.175199,0.332919,0.373557,0.523625,0.408861,0.365487,0.534741,0.0140668,0.363192,0.236011,0.203486,0.273398,0.0816179,0.0223007,0.351067,0.275347,0.019895,0.305885,0.241132,0.371414,0.30666,0.303709,4.9464e-08,0.0135408,0.508064,0.250964,0.383276,0.0243456,0.156714,0.220231,0.509064,0.196976,0.00136659,0.463751,0.00258603,0.307334,0.127092,0.283463,0.0517073,0.472935,0.399569,0.273281,0.0780405,0.275089,0.384593,0.138622,0.359231,0.339729,0.197805,0.608187,0.0870376,0.332774,0.00107377,0.299887,1.06855e-08,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.378361,0.255516,0.20753,0.0224033,0.179412,0.193601,0.220904,0.222977,0.341681,0.310674,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.00178627,0.247588,0.00219731,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.30793,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.203781,0.00193951,0.207559,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.0159159,0.0215816,0.139785,0.197112,0.0315594,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.202137,0.310405,0.0437875,0.218161,0.0822373,0.0219487,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.187731,0.233626,0.0192232,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.00229305,0.089609,0.0367455,0.000455851,0.204393,0.295769,0.286691,0.347036,0.141729,0.0381402,0.255956,0.200105,0.227491,0.00569858,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.28689,0.236464,0.325148,0.115817,0.218052,0.223831,0.11528,0.194982,0.190993,0.281727,0.0445413,0.249955,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.171683,0.158847,0.271275,0.071111,0.270604,0.101021,0.222548,0.175934,0.157274,0.215705,0.252796,0.205954,0.361435
|tfbs_overrepresentation_for_novel_motifs=0.699513,0.869629,0.690871,0.855819,0.641468,0.853988,0.937929,2.14419,0.491742,4.31458,0.820209,0.985163,1.11328,0.925331,0.639839,0.667627,1.17594,0.575162,0.452865,0.305559,0.69094,0.680949,0.845342,0.635379,0.743951,1.00973,1.05396,0.842925,0.645155,0.388328,0.795576,1.21459,1.3235,1.11965,1.46099,5.03488,0.596053,0.855276,1.39264,4.13908,0.598234,0.777097,0.718382,0.63803,0.901413,0.726632,0.939121,0.808003,0.247669,0.645308,1.02504,0.951993,0.336258,1.29475,1.45259,0.928548,0.650353,0.892517,0.388177,0.891404,1.25741,0.941709,1.23315,1.14672,0.961293,1.11026,1.54311,1.91674,1.2037,1.75271,0.762094,0.502203,1.5923,1.45054,1.10051,1.06461,1.02656,1.12884,1.20029,0.73687,0.459024,1.14559,0.960908,0.498519,1.39759,0.507157,0.82001,0.381882,1.053,2.0169,1.63834,1.36973,1.23218,0.543775,0.642354,0.560075,0.450952,2.84649,1.05794,1.68795,0.569121,1.22626,1.27082,1.1798,1.09802,0.815119,1.16312,0.921547,0.743661,0.622396,2.82056,1.26794,0.684398,0.830777,1.58942,0.594137,0.553386,0.794219,1.10778,0.547323,1.44203,1.0504,0.850918,0.973172,1.70203,1.12965,0.930979,1.2374,1.48578,0.561252,1.37044,0.798812,1.50051,0.969553,1.65144,0.372828,0.788803,0.843556,1.60823,2.47382,2.06967,1.57016,0.932872,1.27296,1.09989,0.883164,1.08214,2.31409,0.773313,0.539692,0.853445,0.250511,1.37083,0.481626,0.941179,1.78371,1.03563,0.624795,0.744018,0.710709,1.56892,1.35169,1.19946,0.714443,1.11698,0.960047,0.524529,0.936473,8.95585
}}
}}

Revision as of 16:41, 26 November 2012


Full id: C4332_CD14CD16_Alveolar_Eosinophils_CD14_immature_Natural_CD4



Phase1 CAGE Peaks

Hg19::chr3:47021200..47021229,+p3@NBEAL2
Hg19::chr3:47021263..47021333,+p1@NBEAL2
Hg19::chr3:47021336..47021347,+p9@NBEAL2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen
hematopoietic stem cell1.55e-48168
angioblastic mesenchymal cell1.55e-48168
hematopoietic oligopotent progenitor cell3.22e-47161
hematopoietic multipotent progenitor cell3.22e-47161
hematopoietic cell2.94e-46177
leukocyte1.63e-43136
nongranular leukocyte2.60e-35115
hematopoietic lineage restricted progenitor cell3.30e-34120
myeloid cell3.25e-31108
common myeloid progenitor3.25e-31108
myeloid leukocyte1.13e-2472
defensive cell1.31e-2248
phagocyte1.31e-2248
granulocyte monocyte progenitor cell6.22e-2267
classical monocyte9.59e-2242
CD14-positive, CD16-negative classical monocyte9.59e-2242
macrophage dendritic cell progenitor1.31e-2061
monopoietic cell1.26e-1959
monocyte1.26e-1959
monoblast1.26e-1959
promonocyte1.26e-1959
myeloid lineage restricted progenitor cell4.64e-1966
lymphocyte5.12e-1453
common lymphoid progenitor5.12e-1453
lymphoid lineage restricted progenitor cell8.24e-1452
nucleate cell6.19e-1355
T cell2.64e-1025
pro-T cell2.64e-1025
mature alpha-beta T cell1.51e-0918
alpha-beta T cell1.51e-0918
immature T cell1.51e-0918
mature T cell1.51e-0918
immature alpha-beta T cell1.51e-0918
stuff accumulating cell1.35e-0787
endothelial cell1.80e-0736
intermediate monocyte2.18e-079
CD14-positive, CD16-positive monocyte2.18e-079
Uber Anatomy
Ontology termp-valuen
hematopoietic system5.25e-2398
blood island5.25e-2398
hemolymphoid system3.33e-22108
immune system7.22e-1793
bone marrow6.96e-1676
bone element6.34e-1482
skeletal element1.70e-1090
lateral plate mesoderm1.15e-09203
skeletal system2.72e-07100
blood9.16e-0715
haemolymphatic fluid9.16e-0715
organism substance9.16e-0715
Disease
Ontology termp-valuen
leukemia8.67e-0739
hematologic cancer8.73e-0751
immune system cancer8.73e-0751


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
CCNT2#90536.336201576962630.003930750035764890.0190675152338713
CTCF#1066435.360256373075030.0064925092527670.0280565695899426
E2F4#1874312.66806031528440.0004917987006298980.00438175776276113
EBF1#187938.9064668465690.00141523283560980.00917761577884212
ELF1#199734.258097958807540.01295179875054610.0463943239713364
ETS1#211339.728760922202340.001085840092584840.00763972335148664
GTF2B#2959331.94382993432423.06634405746243e-050.000628919691707225
HMGN3#932438.178547723350590.001827766942164210.0108968005293235
IRF1#365937.63716375356390.002244692747297240.012847781324874
JUND#372736.994663941871030.002921845042734990.0157263746865698
MYC#460935.22228187160940.007020843755740150.0295462747715576
SMC3#9126315.04493284493280.0002935825420371870.00310150385472605
SP1#666735.69838137814090.005403962701712170.0247363455734624
SPI1#668838.204323508522730.001810593189410520.0109279092758232
TCF12#6938310.63446490218640.0008313523990202070.00630633448585643
THAP1#55145220.91276306856750.002983447413736940.0158738735770173
YY1#752834.911170749853860.008441455341808260.0330478372546805
ZBTB7A#5134137.35190930787590.002516255860282270.0140629981159105
ZNF143#7702313.50087655222790.0004062804962997170.0039003151717112
ZNF263#1012738.221841637010680.001799043925565870.0109755446312386



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


This analysis result is provided for C0 - C305 clusters.