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MCL coexpression mm9:187: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004177!1.07e-26!29;UBERON:0005057!1.07e-26!29;UBERON:0002193!1.51e-23!48;UBERON:0002405!1.51e-23!48;UBERON:0002390!3.46e-23!45;UBERON:0003061!3.46e-23!45;UBERON:0002370!2.28e-22!23;UBERON:0000974!2.28e-22!23;UBERON:0004807!2.28e-22!23;UBERON:0005058!2.28e-22!23;UBERON:0003351!2.28e-22!23;UBERON:0009113!2.28e-22!23;UBERON:0003295!2.28e-22!23;UBERON:0009722!2.28e-22!23;UBERON:0005562!2.28e-22!23;UBERON:0007690!2.28e-22!23;UBERON:0006562!3.02e-21!24;UBERON:0003408!3.02e-21!24;UBERON:0001557!3.02e-21!24;UBERON:0001042!3.02e-21!24;UBERON:0008814!3.02e-21!24;UBERON:0009145!3.02e-21!24;UBERON:0000077!3.75e-21!35;UBERON:0000065!9.06e-19!41;UBERON:0000072!2.20e-18!27;UBERON:0001004!3.48e-18!42;UBERON:0000063!3.60e-13!35;UBERON:0007811!1.11e-12!36;UBERON:0001041!7.28e-12!80;UBERON:0003081!1.11e-10!87;UBERON:0000153!6.38e-10!43;UBERON:0005911!6.88e-09!69;UBERON:0004921!4.24e-07!114;UBERON:0003929!7.24e-07!55;UBERON:0001007!7.27e-07!116;UBERON:0001555!7.27e-07!116;UBERON:0007026!7.27e-07!116;UBERON:0002368!8.46e-07!60
|ontology_enrichment_uberon=UBERON:0004177!1.07e-26!29;UBERON:0005057!1.07e-26!29;UBERON:0002193!1.51e-23!48;UBERON:0002405!1.51e-23!48;UBERON:0002390!3.46e-23!45;UBERON:0003061!3.46e-23!45;UBERON:0002370!2.28e-22!23;UBERON:0000974!2.28e-22!23;UBERON:0004807!2.28e-22!23;UBERON:0005058!2.28e-22!23;UBERON:0003351!2.28e-22!23;UBERON:0009113!2.28e-22!23;UBERON:0003295!2.28e-22!23;UBERON:0009722!2.28e-22!23;UBERON:0005562!2.28e-22!23;UBERON:0007690!2.28e-22!23;UBERON:0006562!3.02e-21!24;UBERON:0003408!3.02e-21!24;UBERON:0001557!3.02e-21!24;UBERON:0001042!3.02e-21!24;UBERON:0008814!3.02e-21!24;UBERON:0009145!3.02e-21!24;UBERON:0000077!3.75e-21!35;UBERON:0000065!9.06e-19!41;UBERON:0000072!2.20e-18!27;UBERON:0001004!3.48e-18!42;UBERON:0000063!3.60e-13!35;UBERON:0007811!1.11e-12!36;UBERON:0001041!7.28e-12!80;UBERON:0003081!1.11e-10!87;UBERON:0000153!6.38e-10!43;UBERON:0005911!6.88e-09!69;UBERON:0004921!4.24e-07!114;UBERON:0003929!7.24e-07!55;UBERON:0001007!7.27e-07!116;UBERON:0001555!7.27e-07!116;UBERON:0007026!7.27e-07!116;UBERON:0002368!8.46e-07!60
|tfbs_overrepresentation_for_novel_motifs=0.0669868,0.142995,0.293892,1.44924,0.784658,0.767188,0.179652,0.219481,0.378482,0.0756126,0.0350586,0.679497,0.342283,0.19151,1.86368,0,0.134663,0.520706,0.423082,0.626544,0.896717,0.333623,0.0511582,1.35296,0.0569372,0.219395,0.941596,0.0287316,0.175282,0.135539,0.108475,0.19303,0.10026,0.594022,0.253325,0.414308,0.00155528,0.375609,0.247719,0.445379,0.35134,0.271658,0.92866,0.632583,0.150825,0.0858561,0.316552,0.131757,0.426906,0.179865,0.395761,0.530575,0.410008,0.288249,0.813811,0.0537992,0.554192,0.156773,0.490434,0.053123,0.180771,0.0744969,0.281781,0.119797,0.209838,0.140979,0.405492,0.706634,0.526757,0.575249,0.0442816,0.236035,0.00171916,0.869591,0.126635,0.105,0.780878,0.0903973,0.170529,0.408981,0.239467,0.144035,0.0739256,0.463527,0.243226,0.00815347,2.24315,0.215966,0.0976795,0.856591,0.46234,0.246609,0.201034,0.1197,0.02477,0.31827,0.332019,0.202807,0.653051,0.0240236,1.21514,0.192856,0.275794,0.396549,0.395152,0.0266301,0.157695,0.557507,0.0404797,0.00706342,0.332653,0.27706,0.922992,0.607673,0.468195,0.345992,0.00271776,0.0958846,0.420901,1.18645,0.329775,0.109468,0.481316,0.626377,0.513779,0.172714,0.050128,0.572209,0.404277,1.11485,0.729391,0.424759,0.991665,0.212418,0.486259,0.00873583,0.607687,0.813924,0.445396,1.20935,0.826797,0.40927,1.81821,1.09671,0.121984,0.50666,0.659197,1.17081,0.918904,0.114501,0.0820163,5.07356e-06,0.28938,0.115761,0.0581242,0.350203,0.53259,1.24895,0.342301,0.0154492,0.453227,0.242646,0.514609,0.0618273,0.766745,0.449116,0.0358566,0.675157,0.108911
}}
}}

Revision as of 17:57, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:116355981..116355987,-p@chr10:116355981..116355987
-
Mm9::chr10:117993582..117993598,-p@chr10:117993582..117993598
-
Mm9::chr10:126587762..126587771,+p@chr10:126587762..126587771
+
Mm9::chr10:126587796..126587802,+p@chr10:126587796..126587802
+
Mm9::chr10:126758971..126758986,+p4@Arhgap9
Mm9::chr10:19214443..19214455,+p@chr10:19214443..19214455
+
Mm9::chr10:25949549..25949569,+p1@Samd3
Mm9::chr11:52113578..52113586,+p@chr11:52113578..52113586
+
Mm9::chr11:72904056..72904105,+p1@Itgae
Mm9::chr12:114668031..114668053,-p1@ENSMUST00000103430
p1@uc007pgi.1
p1@uc007pgm.1
p1@uc007pgr.1
Mm9::chr12:85518321..85518352,-p@chr12:85518321..85518352
-
Mm9::chr13:24508610..24508619,+p14@Cmah
Mm9::chr14:78304172..78304248,+p1@Epsti1
Mm9::chr14:78304255..78304260,+p4@Epsti1
Mm9::chr14:78304281..78304310,+p2@Epsti1
Mm9::chr14:78304326..78304340,+p@chr14:78304326..78304340
+
Mm9::chr15:85898136..85898174,+p3@Gramd4
Mm9::chr16:44332955..44332981,-p10@Sidt1
Mm9::chr18:56643019..56643024,+p@chr18:56643019..56643024
+
Mm9::chr18:89375950..89375965,+p@chr18:89375950..89375965
+
Mm9::chr19:5468487..5468506,-p1@Ctsw
Mm9::chr1:154932746..154932754,+p@chr1:154932746..154932754
+
Mm9::chr1:36329635..36329637,+p@chr1:36329635..36329637
+
Mm9::chr2:127143962..127143966,-p@chr2:127143962..127143966
-
Mm9::chr2:26524291..26524300,-p@chr2:26524291..26524300
-
Mm9::chr2:26524313..26524338,-p@chr2:26524313..26524338
-
Mm9::chr2:59176750..59176761,+p@chr2:59176750..59176761
+
Mm9::chr2:59176771..59176786,+p@chr2:59176771..59176786
+
Mm9::chr2:59468123..59468132,+p12@Tanc1
Mm9::chr3:103661517..103661548,+p@chr3:103661517..103661548
+
Mm9::chr3:105618448..105618473,+p1@uc008qvf.1
Mm9::chr3:115677538..115677553,+p@chr3:115677538..115677553
+
Mm9::chr4:134676555..134676575,+p2@Runx3
Mm9::chr4:144826318..144826357,+p@chr4:144826318..144826357
+
Mm9::chr4:149032034..149032054,-p@chr4:149032034..149032054
-
Mm9::chr5:114280399..114280427,-p2@Selplg
Mm9::chr5:67751606..67751616,+p@chr5:67751606..67751616
+
Mm9::chr5:67818825..67818832,-p9@Bend4
Mm9::chr5:67818913..67818930,-p4@Bend4
Mm9::chr5:74799017..74799023,+p@chr5:74799017..74799023
+
Mm9::chr6:129541731..129541741,+p2@Klrd1
Mm9::chr6:129541773..129541785,+p3@Klrd1
Mm9::chr6:129541803..129541835,+p1@Klrd1
Mm9::chr6:71302932..71302941,+p@chr6:71302932..71302941
+
Mm9::chr6:71302962..71302973,+p@chr6:71302962..71302973
+
Mm9::chr6:71302975..71302996,+p@chr6:71302975..71302996
+
Mm9::chr6:71303013..71303047,+p@chr6:71303013..71303047
+
Mm9::chr8:126797856..126797866,-p@chr8:126797856..126797866
-
Mm9::chr8:13974923..13974946,-p4@2610019F03Rik
Mm9::chr8:26179053..26179088,+p@chr8:26179053..26179088
+
Mm9::chr8:97447574..97447583,+p2@Gpr114
Mm9::chr8:97447587..97447608,+p1@Gpr114
Mm9::chr9:32311914..32311919,+p@chr9:32311914..32311919
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hemopoietic organ1.07e-2629
immune organ1.07e-2629
hemolymphoid system1.51e-2348
immune system1.51e-2348
hematopoietic system3.46e-2345
blood island3.46e-2345
thymus2.28e-2223
neck2.28e-2223
respiratory system epithelium2.28e-2223
hemolymphoid system gland2.28e-2223
pharyngeal epithelium2.28e-2223
thymic region2.28e-2223
pharyngeal gland2.28e-2223
entire pharyngeal arch endoderm2.28e-2223
thymus primordium2.28e-2223
early pharyngeal endoderm2.28e-2223
pharynx3.02e-2124
gland of gut3.02e-2124
upper respiratory tract3.02e-2124
chordate pharynx3.02e-2124
pharyngeal arch system3.02e-2124
pharyngeal region of foregut3.02e-2124
mixed endoderm/mesoderm-derived structure3.75e-2135
respiratory tract9.06e-1941
segment of respiratory tract2.20e-1827
respiratory system3.48e-1842
organ segment3.60e-1335
craniocervical region1.11e-1236
foregut7.28e-1280
lateral plate mesoderm1.11e-1087
anterior region of body6.38e-1043
endo-epithelium6.88e-0969
subdivision of digestive tract4.24e-07114
gut epithelium7.24e-0755
digestive system7.27e-07116
digestive tract7.27e-07116
primitive gut7.27e-07116
endocrine gland8.46e-0760


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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