FFCP PHASE1:Hg19::chr11:118225034..118225037,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr11:118225034..118225037,+|id=chr11:118225034..118225037,+|ontology_enrichment_celltype=CL:0000791!1.92e-31!18;CL:0000789!1.92e-31!18;CL:0002420!1.92e-31!18;CL:0002419!1.92e-31!18;CL:0000790!1.92e-31!18;CL:0000084!3.37e-30!25;CL:0000827!3.37e-30!25;CL:0000624!2.98e-18!6;CL:0000838!3.22e-17!52;CL:0000542!8.00e-17!53;CL:0000051!8.00e-17!53;CL:0000898!3.01e-14!3;CL:0000625!4.49e-13!11;CL:0002087!1.75e-10!119;CL:0000815!5.81e-10!2;CL:0000792!5.81e-10!2;CL:0002677!5.81e-10!2;CL:0000893!9.40e-10!2;CL:0002489!9.40e-10!2;CL:0000809!9.40e-10!2;CL:0000808!9.40e-10!2;CL:0000894!9.40e-10!2;CL:0000806!9.40e-10!2;CL:0000807!9.40e-10!2;CL:0000805!9.40e-10!2;CL:0002425!9.40e-10!2;CL:0002031!8.42e-09!124;CL:0000738!3.16e-08!140|ontology_enrichment_celltype_v019=CL:0000898;2.24e-30;3!CL:0000815;1.42e-20;2!CL:0000792;1.42e-20;2!CL:0002677;1.42e-20;2!CL:0000624;1.58e-15;6!CL:0000895;1.31e-11;1!CL:0000084;6.90e-10;25!CL:0000791;3.86e-09;18!CL:0000789;3.86e-09;18!CL:0002419;3.86e-09;18|ontology_enrichment_celltype_v019_2=CL:0000898,1.22e-30,3;CL:0000815,8.62e-21,2;CL:0000792,8.62e-21,2;CL:0002677,8.62e-21,2;CL:0000624,1.17e-15,6;CL:0000810,1.18e-11,1;CL:0000895,1.18e-11,1;CL:0002436,1.18e-11,1;CL:0002427,1.18e-11,1;CL:0002428,1.18e-11,1;CL:0002429,1.18e-11,1;CL:0002433,1.18e-11,1;CL:0002431,1.18e-11,1;CL:0002432,1.18e-11,1;CL:0000084,5.70e-10,25;CL:0000827,5.70e-10,25;CL:0000791,3.39e-09,18;CL:0000789,3.39e-09,18;CL:0002420,3.39e-09,18;CL:0002419,3.39e-09,18;CL:0000790,3.39e-09,18|ontology_enrichment_development_v019=CL:0002427;1.31e-11;1!UBERON:0005425;3.63e-11;1!CL:0000790;3.86e-09;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060060;3.63e-11;1!DOID:0060061;3.63e-11;1!DOID:8691;3.63e-11;1|ontology_enrichment_disease_v019_2=DOID:0060060,2.42e-11,1;DOID:0060061,2.42e-11,1;DOID:8691,2.42e-11,1|ontology_enrichment_uberon=UBERON:0002370!5.70e-17!4;UBERON:0005058!5.70e-17!4;UBERON:0009113!5.70e-17!4;UBERON:0003295!5.70e-17!4;UBERON:0005562!5.70e-17!4;UBERON:0003351!2.35e-11!6;UBERON:0000974!3.01e-10!10;UBERON:0004177!9.56e-10!7;UBERON:0003408!7.73e-07!10;UBERON:0001042!7.73e-07!10;UBERON:0009145!7.73e-07!10|ontology_enrichment_uberon_v019=UBERON:0000941;3.63e-11;1!UBERON:0001785;3.63e-11;1!UBERON:0002464;3.63e-11;1!UBERON:0004904;3.63e-11;1!UBERON:0001021;3.63e-11;1|ontology_enrichment_uberon_v019_2=UBERON:0000941,3.28e-11,1;UBERON:0001785,3.28e-11,1;UBERON:0002464,3.28e-11,1;UBERON:0004904,3.28e-11,1;UBERON:0001021,3.28e-11,1;UBERON:0003902,3.28e-11,1;UBERON:0005425,3.28e-11,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.651032612147555,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786839080455332,0,0.616804496998528,0.167186495390678,1.62961133316795,2.8406868344084,1.94826728407911,1.00269411196656,1.47302953737419,0.886135578334485,0,5.89220070738106,4.1618991219161,1.15106533222573,0.552700035571697,0,0.296573126324121,2.1403266247177,3.1360657141493,1.0197840842781,3.83220493601921,1.37450978193052,0.506039384039006,0.318565414324097,0,0,0.150575119077773,0,0,0.236777252044017,0,0.80642697289893,0.267440195783507,3.33096128930438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0,0,0.336255431980582,0,0.862510299438069,1.15508732651774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.497992903438899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.7896618469388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.41981432097328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79988656269437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr11:118225034..118225037,+ | |||
|id=chr11:118225034..118225037,+ | |||
|ontology_enrichment_celltype=CL:0000791!1.92e-31!18;CL:0000789!1.92e-31!18;CL:0002420!1.92e-31!18;CL:0002419!1.92e-31!18;CL:0000790!1.92e-31!18;CL:0000084!3.37e-30!25;CL:0000827!3.37e-30!25;CL:0000624!2.98e-18!6;CL:0000838!3.22e-17!52;CL:0000542!8.00e-17!53;CL:0000051!8.00e-17!53;CL:0000898!3.01e-14!3;CL:0000625!4.49e-13!11;CL:0002087!1.75e-10!119;CL:0000815!5.81e-10!2;CL:0000792!5.81e-10!2;CL:0002677!5.81e-10!2;CL:0000893!9.40e-10!2;CL:0002489!9.40e-10!2;CL:0000809!9.40e-10!2;CL:0000808!9.40e-10!2;CL:0000894!9.40e-10!2;CL:0000806!9.40e-10!2;CL:0000807!9.40e-10!2;CL:0000805!9.40e-10!2;CL:0002425!9.40e-10!2;CL:0002031!8.42e-09!124;CL:0000738!3.16e-08!140 | |||
|ontology_enrichment_celltype_v019=CL:0000898;2.24e-30;3!CL:0000815;1.42e-20;2!CL:0000792;1.42e-20;2!CL:0002677;1.42e-20;2!CL:0000624;1.58e-15;6!CL:0000895;1.31e-11;1!CL:0000084;6.90e-10;25!CL:0000791;3.86e-09;18!CL:0000789;3.86e-09;18!CL:0002419;3.86e-09;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000898,1.22e-30,3;CL:0000815,8.62e-21,2;CL:0000792,8.62e-21,2;CL:0002677,8.62e-21,2;CL:0000624,1.17e-15,6;CL:0000810,1.18e-11,1;CL:0000895,1.18e-11,1;CL:0002436,1.18e-11,1;CL:0002427,1.18e-11,1;CL:0002428,1.18e-11,1;CL:0002429,1.18e-11,1;CL:0002433,1.18e-11,1;CL:0002431,1.18e-11,1;CL:0002432,1.18e-11,1;CL:0000084,5.70e-10,25;CL:0000827,5.70e-10,25;CL:0000791,3.39e-09,18;CL:0000789,3.39e-09,18;CL:0002420,3.39e-09,18;CL:0002419,3.39e-09,18;CL:0000790,3.39e-09,18 | |||
|ontology_enrichment_development_v019=CL:0002427;1.31e-11;1!UBERON:0005425;3.63e-11;1!CL:0000790;3.86e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060060;3.63e-11;1!DOID:0060061;3.63e-11;1!DOID:8691;3.63e-11;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,2.42e-11,1;DOID:0060061,2.42e-11,1;DOID:8691,2.42e-11,1 | |||
|ontology_enrichment_uberon=UBERON:0002370!5.70e-17!4;UBERON:0005058!5.70e-17!4;UBERON:0009113!5.70e-17!4;UBERON:0003295!5.70e-17!4;UBERON:0005562!5.70e-17!4;UBERON:0003351!2.35e-11!6;UBERON:0000974!3.01e-10!10;UBERON:0004177!9.56e-10!7;UBERON:0003408!7.73e-07!10;UBERON:0001042!7.73e-07!10;UBERON:0009145!7.73e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;3.63e-11;1!UBERON:0001785;3.63e-11;1!UBERON:0002464;3.63e-11;1!UBERON:0004904;3.63e-11;1!UBERON:0001021;3.63e-11;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,3.28e-11,1;UBERON:0001785,3.28e-11,1;UBERON:0002464,3.28e-11,1;UBERON:0004904,3.28e-11,1;UBERON:0001021,3.28e-11,1;UBERON:0003902,3.28e-11,1;UBERON:0005425,3.28e-11,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.651032612147555,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786839080455332,0,0.616804496998528,0.167186495390678,1.62961133316795,2.8406868344084,1.94826728407911,1.00269411196656,1.47302953737419,0.886135578334485,0,5.89220070738106,4.1618991219161,1.15106533222573,0.552700035571697,0,0.296573126324121,2.1403266247177,3.1360657141493,1.0197840842781,3.83220493601921,1.37450978193052,0.506039384039006,0.318565414324097,0,0,0.150575119077773,0,0,0.236777252044017,0,0.80642697289893,0.267440195783507,3.33096128930438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0,0,0.336255431980582,0,0.862510299438069,1.15508732651774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.497992903438899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.7896618469388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.41981432097328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79988656269437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308696632431779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476128862927481,0.129177819672012,0.31037357147929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p@chr11:118225034..118225037,+ | |||
}} |
Revision as of 16:01, 10 September 2013
Short description: | p@chr11:118225034..118225037, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:118225034..118225037, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
naive T cell | 1.22e-30 | 3 |
regulatory T cell | 8.62e-21 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 8.62e-21 | 2 |
naive regulatory T cell | 8.62e-21 | 2 |
CD4-positive, alpha-beta T cell | 1.17e-15 | 6 |
CD4-positive, alpha-beta thymocyte | 1.18e-11 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 1.18e-11 | 1 |
mature CD4 single-positive thymocyte | 1.18e-11 | 1 |
resting double-positive thymocyte | 1.18e-11 | 1 |
double-positive blast | 1.18e-11 | 1 |
CD69-positive double-positive thymocyte | 1.18e-11 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 1.18e-11 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 1.18e-11 | 1 |
CD24-positive, CD4 single-positive thymocyte | 1.18e-11 | 1 |
T cell | 5.70e-10 | 25 |
pro-T cell | 5.70e-10 | 25 |
mature alpha-beta T cell | 3.39e-09 | 18 |
alpha-beta T cell | 3.39e-09 | 18 |
immature T cell | 3.39e-09 | 18 |
mature T cell | 3.39e-09 | 18 |
immature alpha-beta T cell | 3.39e-09 | 18 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 3.28e-11 | 1 |
cranial nerve | 3.28e-11 | 1 |
nerve trunk | 3.28e-11 | 1 |
nerve connecting eye with brain | 3.28e-11 | 1 |
nerve | 3.28e-11 | 1 |
retinal neural layer | 3.28e-11 | 1 |
presumptive neural retina | 3.28e-11 | 1 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 2.42e-11 | 1 |
cutaneous T cell lymphoma | 2.42e-11 | 1 |
mycosis fungoides | 2.42e-11 | 1 |
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