FFCP PHASE1:Hg19::chr3:110790904..110790935,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=25945|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17664|TSSclassifier=S|UniProt=E9PFR0,Q8NC05|association_with_transcript=-79bp_to_ENST00000493615,NM_001243288,uc003dxu.1_5end|description=CAGE_peak_7_at_PVRL3_5end|id=chr3:110790904..110790935,+|ontology_enrichment_celltype=CL:0000057!4.39e-11!75;CL:0002620!2.31e-08!23;CL:0000055!5.37e-08!180|ontology_enrichment_celltype_v019=CL:0000064;4.17e-20;3!CL:0000067;4.17e-20;3!CL:0005012;4.17e-20;3!CL:0002304;4.17e-20;3!CL:0000306;8.85e-15;4!CL:0002222;8.85e-15;4!CL:0002224;8.85e-15;4!CL:0000540;1.38e-09;6!CL:0000404;1.38e-09;6!CL:0000075;5.72e-08;27|ontology_enrichment_celltype_v019_2=CL:0000064,3.95e-20,3;CL:0000067,3.95e-20,3;CL:0005012,3.95e-20,3;CL:0002304,3.95e-20,3;CL:0000306,6.58e-15,4;CL:0002222,6.58e-15,4;CL:0002224,6.58e-15,4;CL:0000047,2.41e-12,8;CL:0000540,1.11e-09,6;CL:0000031,1.11e-09,6;CL:0000404,1.11e-09,6;CL:0000075,5.21e-08,27;CL:0000133,9.16e-07,59|ontology_enrichment_development_v019=CL:0000031;1.38e-09;6!UBERON:0003124;2.42e-07;1!UBERON:0003099;2.42e-07;1!UBERON:0003852;2.42e-07;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000468!2.12e-07!659;UBERON:0000481!3.06e-07!347|ontology_enrichment_uberon_v019=UBERON:0001801;2.60e-21;14!UBERON:0007625;2.09e-20;11!UBERON:0001778;4.17e-20;3!UBERON:0001775;4.17e-20;3!UBERON:0001456;5.53e-18;21!UBERON:0002203;3.30e-17;6!UBERON:0001768;3.30e-17;6!UBERON:0002200;3.30e-17;6!UBERON:0000019;1.79e-15;19!UBERON:0000047;1.79e-15;19!UBERON:0004088;1.79e-15;19!UBERON:0010230;1.79e-15;19!UBERON:0000488;3.23e-15;4!UBERON:0010077;8.85e-15;4!UBERON:0005389;8.85e-15;4!UBERON:0000484;8.85e-15;4!UBERON:0000965;8.85e-15;4!UBERON:0001803;8.85e-15;4!UBERON:0000970;1.18e-14;20!UBERON:0002104;6.46e-14;21!UBERON:0000020;1.25e-12;23!UBERON:0001032;4.59e-12;24!UBERON:0004456;4.59e-12;24!UBERON:0001444;1.88e-09;48!UBERON:0006876;1.94e-09;11!UBERON:0010371;5.53e-09;31!UBERON:0000033;9.08e-09;50!UBERON:0003104;2.77e-08;7!UBERON:0009142;2.77e-08;7!UBERON:0005705;2.42e-07;1!UBERON:0008193;2.42e-07;1!UBERON:0010912;2.42e-07;1!UBERON:0002514;2.42e-07;1!UBERON:0003457;2.42e-07;1!UBERON:0008907;2.42e-07;1!UBERON:0008001;2.42e-07;1!UBERON:0007213;2.42e-07;1!UBERON:0009891;2.42e-07;1!UBERON:0007914;2.42e-07;1!UBERON:0007375;2.42e-07;1!UBERON:0003323;2.42e-07;1!UBERON:0010258;2.42e-07;1!UBERON:0005253;2.42e-07;1!UBERON:0007842;2.42e-07;1!UBERON:0002397;2.42e-07;1!UBERON:0003113;2.42e-07;1!UBERON:0003277;2.42e-07;1!UBERON:0001709;2.42e-07;1!UBERON:0002244;2.42e-07;1!UBERON:0005620;2.42e-07;1!UBERON:0010364;2.42e-07;1!UBERON:0004288;2.42e-07;1!UBERON:0007811;6.23e-07;52|ontology_enrichment_uberon_v019_2=UBERON:0001801,2.62e-21,14;UBERON:0007625,1.63e-20,11;UBERON:0001778,3.95e-20,3;UBERON:0001775,3.95e-20,3;UBERON:0001456,3.37e-17,22;UBERON:0002203,4.35e-17,6;UBERON:0001768,4.35e-17,6;UBERON:0002200,4.35e-17,6;UBERON:0000488,3.10e-15,4;UBERON:0010077,6.58e-15,4;UBERON:0005389,6.58e-15,4;UBERON:0000484,6.58e-15,4;UBERON:0002546,6.58e-15,4;UBERON:0000965,6.58e-15,4;UBERON:0001803,6.58e-15,4;UBERON:0003073,6.58e-15,4;UBERON:0005426,6.58e-15,4;UBERON:0000019,1.18e-14,20;UBERON:0000047,1.18e-14,20;UBERON:0010312,1.18e-14,20;UBERON:0004088,1.18e-14,20;UBERON:0010230,1.18e-14,20;UBERON:0003072,1.18e-14,20;UBERON:0004128,1.18e-14,20;UBERON:0003071,1.18e-14,20;UBERON:0000970,6.50e-14,21;UBERON:0002104,6.50e-14,21;UBERON:0001444,1.89e-13,49;UBERON:0000020,4.61e-12,24;UBERON:0001032,4.61e-12,24;UBERON:0004456,4.61e-12,24;UBERON:0005085,7.20e-12,31;UBERON:0000033,1.64e-11,56;UBERON:0000153,3.38e-10,62;UBERON:0007811,3.38e-10,62;UBERON:0006876,2.24e-09,11;UBERON:0004121,7.49e-09,171;UBERON:0000924,7.49e-09,171;UBERON:0006601,7.49e-09,171;UBERON:0000076,1.10e-07,8;UBERON:0005705,1.33e-07,1;UBERON:0008193,1.33e-07,1;UBERON:0010912,1.33e-07,1;UBERON:0002514,1.33e-07,1;UBERON:0003457,1.33e-07,1;UBERON:0008907,1.33e-07,1;UBERON:0008001,1.33e-07,1;UBERON:0007213,1.33e-07,1;UBERON:0009891,1.33e-07,1;UBERON:0007914,1.33e-07,1;UBERON:0009292,1.33e-07,1;UBERON:0003099,1.33e-07,1;UBERON:0007375,1.33e-07,1;UBERON:0003323,1.33e-07,1;UBERON:0010258,1.33e-07,1;UBERON:0007842,1.33e-07,1;UBERON:0009494,1.33e-07,1;UBERON:0010042,1.33e-07,1;UBERON:0010045,1.33e-07,1;UBERON:0010259,1.33e-07,1;UBERON:0010359,1.33e-07,1;UBERON:0009526,1.33e-07,1;UBERON:0002397,1.33e-07,1;UBERON:0003113,1.33e-07,1;UBERON:0003277,1.33e-07,1;UBERON:0001709,1.33e-07,1;UBERON:0004066,1.33e-07,1;UBERON:0002244,1.33e-07,1;UBERON:0005620,1.33e-07,1;UBERON:0004362,1.33e-07,1;UBERON:0010364,1.33e-07,1;UBERON:0010046,1.33e-07,1;UBERON:0005868,1.33e-07,1;UBERON:0007238,1.33e-07,1;UBERON:0004288,1.33e-07,1;UBERON:0004068,1.33e-07,1;UBERON:0010334,1.33e-07,1;UBERON:0003852,1.33e-07,1;UBERON:0010253,1.33e-07,1|phase1_expression=0.54503513781167,0.214100523890983,0.281908808191942,0,0,0,2.53299878168311,0,0,0,0,0,0,0.247532705920093,0.331397375727916,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=25945 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17664 | |||
|TSSclassifier=S | |||
|UniProt=E9PFR0,Q8NC05 | |||
|association_with_transcript=-79bp_to_ENST00000493615,NM_001243288,uc003dxu.1_5end | |||
|description=CAGE_peak_7_at_PVRL3_5end | |||
|id=chr3:110790904..110790935,+ | |||
|ontology_enrichment_celltype=CL:0000057!4.39e-11!75;CL:0002620!2.31e-08!23;CL:0000055!5.37e-08!180 | |||
|ontology_enrichment_celltype_v019=CL:0000064;4.17e-20;3!CL:0000067;4.17e-20;3!CL:0005012;4.17e-20;3!CL:0002304;4.17e-20;3!CL:0000306;8.85e-15;4!CL:0002222;8.85e-15;4!CL:0002224;8.85e-15;4!CL:0000540;1.38e-09;6!CL:0000404;1.38e-09;6!CL:0000075;5.72e-08;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,3.95e-20,3;CL:0000067,3.95e-20,3;CL:0005012,3.95e-20,3;CL:0002304,3.95e-20,3;CL:0000306,6.58e-15,4;CL:0002222,6.58e-15,4;CL:0002224,6.58e-15,4;CL:0000047,2.41e-12,8;CL:0000540,1.11e-09,6;CL:0000031,1.11e-09,6;CL:0000404,1.11e-09,6;CL:0000075,5.21e-08,27;CL:0000133,9.16e-07,59 | |||
|ontology_enrichment_development_v019=CL:0000031;1.38e-09;6!UBERON:0003124;2.42e-07;1!UBERON:0003099;2.42e-07;1!UBERON:0003852;2.42e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!2.12e-07!659;UBERON:0000481!3.06e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0001801;2.60e-21;14!UBERON:0007625;2.09e-20;11!UBERON:0001778;4.17e-20;3!UBERON:0001775;4.17e-20;3!UBERON:0001456;5.53e-18;21!UBERON:0002203;3.30e-17;6!UBERON:0001768;3.30e-17;6!UBERON:0002200;3.30e-17;6!UBERON:0000019;1.79e-15;19!UBERON:0000047;1.79e-15;19!UBERON:0004088;1.79e-15;19!UBERON:0010230;1.79e-15;19!UBERON:0000488;3.23e-15;4!UBERON:0010077;8.85e-15;4!UBERON:0005389;8.85e-15;4!UBERON:0000484;8.85e-15;4!UBERON:0000965;8.85e-15;4!UBERON:0001803;8.85e-15;4!UBERON:0000970;1.18e-14;20!UBERON:0002104;6.46e-14;21!UBERON:0000020;1.25e-12;23!UBERON:0001032;4.59e-12;24!UBERON:0004456;4.59e-12;24!UBERON:0001444;1.88e-09;48!UBERON:0006876;1.94e-09;11!UBERON:0010371;5.53e-09;31!UBERON:0000033;9.08e-09;50!UBERON:0003104;2.77e-08;7!UBERON:0009142;2.77e-08;7!UBERON:0005705;2.42e-07;1!UBERON:0008193;2.42e-07;1!UBERON:0010912;2.42e-07;1!UBERON:0002514;2.42e-07;1!UBERON:0003457;2.42e-07;1!UBERON:0008907;2.42e-07;1!UBERON:0008001;2.42e-07;1!UBERON:0007213;2.42e-07;1!UBERON:0009891;2.42e-07;1!UBERON:0007914;2.42e-07;1!UBERON:0007375;2.42e-07;1!UBERON:0003323;2.42e-07;1!UBERON:0010258;2.42e-07;1!UBERON:0005253;2.42e-07;1!UBERON:0007842;2.42e-07;1!UBERON:0002397;2.42e-07;1!UBERON:0003113;2.42e-07;1!UBERON:0003277;2.42e-07;1!UBERON:0001709;2.42e-07;1!UBERON:0002244;2.42e-07;1!UBERON:0005620;2.42e-07;1!UBERON:0010364;2.42e-07;1!UBERON:0004288;2.42e-07;1!UBERON:0007811;6.23e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001801,2.62e-21,14;UBERON:0007625,1.63e-20,11;UBERON:0001778,3.95e-20,3;UBERON:0001775,3.95e-20,3;UBERON:0001456,3.37e-17,22;UBERON:0002203,4.35e-17,6;UBERON:0001768,4.35e-17,6;UBERON:0002200,4.35e-17,6;UBERON:0000488,3.10e-15,4;UBERON:0010077,6.58e-15,4;UBERON:0005389,6.58e-15,4;UBERON:0000484,6.58e-15,4;UBERON:0002546,6.58e-15,4;UBERON:0000965,6.58e-15,4;UBERON:0001803,6.58e-15,4;UBERON:0003073,6.58e-15,4;UBERON:0005426,6.58e-15,4;UBERON:0000019,1.18e-14,20;UBERON:0000047,1.18e-14,20;UBERON:0010312,1.18e-14,20;UBERON:0004088,1.18e-14,20;UBERON:0010230,1.18e-14,20;UBERON:0003072,1.18e-14,20;UBERON:0004128,1.18e-14,20;UBERON:0003071,1.18e-14,20;UBERON:0000970,6.50e-14,21;UBERON:0002104,6.50e-14,21;UBERON:0001444,1.89e-13,49;UBERON:0000020,4.61e-12,24;UBERON:0001032,4.61e-12,24;UBERON:0004456,4.61e-12,24;UBERON:0005085,7.20e-12,31;UBERON:0000033,1.64e-11,56;UBERON:0000153,3.38e-10,62;UBERON:0007811,3.38e-10,62;UBERON:0006876,2.24e-09,11;UBERON:0004121,7.49e-09,171;UBERON:0000924,7.49e-09,171;UBERON:0006601,7.49e-09,171;UBERON:0000076,1.10e-07,8;UBERON:0005705,1.33e-07,1;UBERON:0008193,1.33e-07,1;UBERON:0010912,1.33e-07,1;UBERON:0002514,1.33e-07,1;UBERON:0003457,1.33e-07,1;UBERON:0008907,1.33e-07,1;UBERON:0008001,1.33e-07,1;UBERON:0007213,1.33e-07,1;UBERON:0009891,1.33e-07,1;UBERON:0007914,1.33e-07,1;UBERON:0009292,1.33e-07,1;UBERON:0003099,1.33e-07,1;UBERON:0007375,1.33e-07,1;UBERON:0003323,1.33e-07,1;UBERON:0010258,1.33e-07,1;UBERON:0007842,1.33e-07,1;UBERON:0009494,1.33e-07,1;UBERON:0010042,1.33e-07,1;UBERON:0010045,1.33e-07,1;UBERON:0010259,1.33e-07,1;UBERON:0010359,1.33e-07,1;UBERON:0009526,1.33e-07,1;UBERON:0002397,1.33e-07,1;UBERON:0003113,1.33e-07,1;UBERON:0003277,1.33e-07,1;UBERON:0001709,1.33e-07,1;UBERON:0004066,1.33e-07,1;UBERON:0002244,1.33e-07,1;UBERON:0005620,1.33e-07,1;UBERON:0004362,1.33e-07,1;UBERON:0010364,1.33e-07,1;UBERON:0010046,1.33e-07,1;UBERON:0005868,1.33e-07,1;UBERON:0007238,1.33e-07,1;UBERON:0004288,1.33e-07,1;UBERON:0004068,1.33e-07,1;UBERON:0010334,1.33e-07,1;UBERON:0003852,1.33e-07,1;UBERON:0010253,1.33e-07,1 | |||
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| |||
|short_description=p7@PVRL3 | |||
}} |
Revision as of 20:42, 12 September 2013
Short description: | p7@PVRL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_PVRL3_5end |
Coexpression cluster: | NA |
Association with transcript: | -79bp_to_ENST00000493615, NM_001243288, uc003dxu.1_5end |
EntrezGene: | PVRL3 |
HGNC: | 17664 |
UniProt: | E9PFR0Q8NC05 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 3.95e-20 | 3 |
ciliated epithelial cell | 3.95e-20 | 3 |
multi-ciliated epithelial cell | 3.95e-20 | 3 |
non-pigmented ciliary epithelial cell | 3.95e-20 | 3 |
crystallin accumulating cell | 6.58e-15 | 4 |
vertebrate lens cell | 6.58e-15 | 4 |
lens epithelial cell | 6.58e-15 | 4 |
neuronal stem cell | 2.41e-12 | 8 |
neuron | 1.11e-09 | 6 |
neuroblast | 1.11e-09 | 6 |
electrically signaling cell | 1.11e-09 | 6 |
columnar/cuboidal epithelial cell | 5.21e-08 | 27 |
neurectodermal cell | 9.16e-07 | 59 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.