FFCP PHASE1:Mm9::chr12:101444921..101444976,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=1098|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr12:101444921..101444976,+|id=chr12:101444921..101444976,+|ontology_enrichment_celltype=CL:0000117!2.16e-07!23;CL:0000337!2.16e-07!23;CL:0000540!2.41e-07!33;CL:0000047!2.41e-07!33;CL:0000031!2.41e-07!33;CL:0000404!2.41e-07!33;CL:0000393!3.79e-07!39;CL:0000211!3.79e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,2.53e-08,23;CL:0000337,2.53e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!4.30e-13!75;UBERON:0001016!4.30e-13!75;UBERON:0001017!5.51e-13!73;UBERON:0005743!5.51e-13!73;UBERON:0001049!1.28e-11!52;UBERON:0005068!1.28e-11!52;UBERON:0006241!1.28e-11!52;UBERON:0007135!1.28e-11!52;UBERON:0002020!9.47e-11!34;UBERON:0000955!1.72e-10!50;UBERON:0006238!1.72e-10!50;UBERON:0002616!3.22e-10!49;UBERON:0003080!5.73e-09!40;UBERON:0002780!1.56e-08!39;UBERON:0001890!1.56e-08!39;UBERON:0006240!1.56e-08!39;UBERON:0004121!2.40e-08!102;UBERON:0000924!2.40e-08!102;UBERON:0006601!2.40e-08!102;UBERON:0002791!2.56e-08!29;UBERON:0003528!2.56e-08!29;UBERON:0001893!2.56e-08!29;UBERON:0002021!3.81e-08!10;UBERON:0000411!3.81e-08!10;UBERON:0001950!3.81e-08!10;UBERON:0000033!1.56e-07!63;UBERON:0002346!1.64e-07!71;UBERON:0003075!1.64e-07!71;UBERON:0007284!1.64e-07!71;UBERON:0000956!7.08e-07!21;UBERON:0001869!7.08e-07!21;UBERON:0000203!7.08e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.42e-15,54;UBERON:0001017,2.32e-14,73;UBERON:0001049,6.76e-14,52;UBERON:0005068,6.76e-14,52;UBERON:0006241,6.76e-14,52;UBERON:0007135,6.76e-14,52;UBERON:0001016,1.67e-13,75;UBERON:0002020,1.91e-13,34;UBERON:0000955,1.25e-10,47;UBERON:0006238,1.25e-10,47;UBERON:0002021,1.67e-10,10;UBERON:0000411,1.67e-10,10;UBERON:0001950,1.67e-10,10;UBERON:0002616,2.78e-10,46;UBERON:0003528,3.42e-10,29;UBERON:0002791,3.42e-10,29;UBERON:0001893,3.42e-10,29;UBERON:0002346,5.73e-10,64;UBERON:0003075,5.73e-10,64;UBERON:0007284,5.73e-10,64;UBERON:0003080,2.22e-09,40;UBERON:0004121,4.17e-09,95;UBERON:0000924,4.17e-09,95;UBERON:0006601,4.17e-09,95;UBERON:0000956,7.20e-09,21;UBERON:0001869,7.20e-09,21;UBERON:0000203,7.20e-09,21;UBERON:0002780,7.76e-09,39;UBERON:0001890,7.76e-09,39;UBERON:0006240,7.76e-09,39;UBERON:0010371,1.22e-08,73;UBERON:0002619,1.35e-08,17;UBERON:0011216,8.46e-07,194|phase1_expression=0.960893082628764,1.04692622291808,1.81999695755814,1.51232105653415,2.00358291978539,0.839396359559449,1.86890112476421,0.645616617207881,0.985521055061667,1.17032263160997,0.856089841127525,0.957265907944037,0.171200729931206,0.524522414513984,0.666219523631325,0,0,0.788655413395594,1.37114433605739,0.42438965179803,2.12608225377674,0.595745707205312,1.56719873483361,4.95976510659561,3.44113921600755,2.29692785646008,0.430761996159075,2.58565479223067,9.88121781173144,2.52030129759931,1.33038306393183,0,0,0,0.288851619751275,0.831173226792462,0,2.09265815368454,1.5626706890476,1.57057123192139,0,0.683045484958446,2.91306211818692,0.503587271902309,0.202753862439029,0.367093504323363,0,0,0,0,0.419959264876088,0,1.00669563634642,2.17608642603403,1.34437519656986,2.31533492432352,3.43840127926508,5.15672092277442,1.21389876515759,1.5869729378161,1.90149421051854,0,0,0.449949858640699,2.96659908770092,0.7104801149461,0.299600110518405,1.53687322128622,0.725827286159344,2.16009501330705,1.05162480675691,5.14171771926846,3.3130281142742,0.979926393719632,1.34183659425531,1.83843757322004,3.30347642998166,5.61824287574826,4.45458946443106,0.923204014111357,3.29355516968675,0,8.93385596804419,7.31591393041184,4.5839474333043,8.54422897873636,8.25755748634797,2.05039390407831,0.984440513331393,0.906858721281426,0.869593466105033,1.72084775396277,0.679971333707751,2.69851595818909,1.94932925234301,0.448026887097336,0.702222100658759,3.06774580640504,3.89679006904303,0.35333957451034,1.26759077799012,1.28326477414318,0,0,3.030874574157,2.78695852022608,6.0662933401774,0.91347103775248,0,0.890652834388949,0.520455980298408,0.913396434936424,0.461230994512117,0.452167921657868,0.352766121407114,0.502666365318702,0.494389935468748,0.144599356919912,0,0.161766849947409,0.220841518460394,1.45462575940567,0,2.34224637609238,1.8850203613211,2.29911349687732,0.479260498023681,0,0.762421362438388,3.44518470631092,4.57500602818627,0.879580464790051,3.12883776346098,6.90431734791892,3.32460871295296,2.59586020908412,0.101839363850316,0.373220911830279,1.0108910337347,0.420883711772948,0.130120442962704,0.689706313300419,0,0.60281927134286,0.204109497453984,0.768682321709099,0.468508622798644,1.29351685369508,0.215567992932842,0.378212160335639,0.175951124163949,0.219195732427575,0.556094498451196,0.348252166522167,0.823128545631774,0.199034266818493,1.40442637462647,0.51469581422943,0.284163499395593,0.414251545071004,0.469052119962192,0.900310307305074,0.473489471170421,0.393528463494808,1.23413690309903,0.930135779001631,0.268273401399619,0.233530684734339,0.329119699826961,0.820837320395476,0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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=1098 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr12:101444921..101444976,+ | |||
|id=chr12:101444921..101444976,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.16e-07!23;CL:0000337!2.16e-07!23;CL:0000540!2.41e-07!33;CL:0000047!2.41e-07!33;CL:0000031!2.41e-07!33;CL:0000404!2.41e-07!33;CL:0000393!3.79e-07!39;CL:0000211!3.79e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.53e-08,23;CL:0000337,2.53e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.30e-13!75;UBERON:0001016!4.30e-13!75;UBERON:0001017!5.51e-13!73;UBERON:0005743!5.51e-13!73;UBERON:0001049!1.28e-11!52;UBERON:0005068!1.28e-11!52;UBERON:0006241!1.28e-11!52;UBERON:0007135!1.28e-11!52;UBERON:0002020!9.47e-11!34;UBERON:0000955!1.72e-10!50;UBERON:0006238!1.72e-10!50;UBERON:0002616!3.22e-10!49;UBERON:0003080!5.73e-09!40;UBERON:0002780!1.56e-08!39;UBERON:0001890!1.56e-08!39;UBERON:0006240!1.56e-08!39;UBERON:0004121!2.40e-08!102;UBERON:0000924!2.40e-08!102;UBERON:0006601!2.40e-08!102;UBERON:0002791!2.56e-08!29;UBERON:0003528!2.56e-08!29;UBERON:0001893!2.56e-08!29;UBERON:0002021!3.81e-08!10;UBERON:0000411!3.81e-08!10;UBERON:0001950!3.81e-08!10;UBERON:0000033!1.56e-07!63;UBERON:0002346!1.64e-07!71;UBERON:0003075!1.64e-07!71;UBERON:0007284!1.64e-07!71;UBERON:0000956!7.08e-07!21;UBERON:0001869!7.08e-07!21;UBERON:0000203!7.08e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.42e-15,54;UBERON:0001017,2.32e-14,73;UBERON:0001049,6.76e-14,52;UBERON:0005068,6.76e-14,52;UBERON:0006241,6.76e-14,52;UBERON:0007135,6.76e-14,52;UBERON:0001016,1.67e-13,75;UBERON:0002020,1.91e-13,34;UBERON:0000955,1.25e-10,47;UBERON:0006238,1.25e-10,47;UBERON:0002021,1.67e-10,10;UBERON:0000411,1.67e-10,10;UBERON:0001950,1.67e-10,10;UBERON:0002616,2.78e-10,46;UBERON:0003528,3.42e-10,29;UBERON:0002791,3.42e-10,29;UBERON:0001893,3.42e-10,29;UBERON:0002346,5.73e-10,64;UBERON:0003075,5.73e-10,64;UBERON:0007284,5.73e-10,64;UBERON:0003080,2.22e-09,40;UBERON:0004121,4.17e-09,95;UBERON:0000924,4.17e-09,95;UBERON:0006601,4.17e-09,95;UBERON:0000956,7.20e-09,21;UBERON:0001869,7.20e-09,21;UBERON:0000203,7.20e-09,21;UBERON:0002780,7.76e-09,39;UBERON:0001890,7.76e-09,39;UBERON:0006240,7.76e-09,39;UBERON:0010371,1.22e-08,73;UBERON:0002619,1.35e-08,17;UBERON:0011216,8.46e-07,194 | |||
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| |||
|short_description=p@chr12:101444921..101444976,+ | |||
}} |
Revision as of 21:57, 12 September 2013
Short description: | p@chr12:101444921..101444976, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:101444921..101444976, + |
Coexpression cluster: | MCL_coexpression_mm9:1098 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.53e-08 | 23 |
neuroblast (sensu Vertebrata) | 2.53e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 3.42e-15 | 54 |
central nervous system | 2.32e-14 | 73 |
neural tube | 6.76e-14 | 52 |
neural rod | 6.76e-14 | 52 |
future spinal cord | 6.76e-14 | 52 |
neural keel | 6.76e-14 | 52 |
nervous system | 1.67e-13 | 75 |
gray matter | 1.91e-13 | 34 |
brain | 1.25e-10 | 47 |
future brain | 1.25e-10 | 47 |
occipital lobe | 1.67e-10 | 10 |
visual cortex | 1.67e-10 | 10 |
neocortex | 1.67e-10 | 10 |
regional part of brain | 2.78e-10 | 46 |
brain grey matter | 3.42e-10 | 29 |
regional part of telencephalon | 3.42e-10 | 29 |
telencephalon | 3.42e-10 | 29 |
neurectoderm | 5.73e-10 | 64 |
neural plate | 5.73e-10 | 64 |
presumptive neural plate | 5.73e-10 | 64 |
anterior neural tube | 2.22e-09 | 40 |
ectoderm-derived structure | 4.17e-09 | 95 |
ectoderm | 4.17e-09 | 95 |
presumptive ectoderm | 4.17e-09 | 95 |
cerebral cortex | 7.20e-09 | 21 |
cerebral hemisphere | 7.20e-09 | 21 |
pallium | 7.20e-09 | 21 |
regional part of forebrain | 7.76e-09 | 39 |
forebrain | 7.76e-09 | 39 |
future forebrain | 7.76e-09 | 39 |
ecto-epithelium | 1.22e-08 | 73 |
regional part of cerebral cortex | 1.35e-08 | 17 |
organ system subdivision | 8.46e-07 | 194 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.