FFCP PHASE1:Mm9::chr12:113960374..113960450,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=217882|HGNC=|MCL_coexpression_id=1|UniProt=Q80U49|association_with_transcript=0bp_to_ENSMUST00000092279,ENSMUST00000101018,NM_001024602,uc007pfb.1_5end|description=CAGE_peak_1_at_AW555464_5end|id=chr12:113960374..113960450,+|ontology_enrichment_celltype=CL:0000117!2.39e-10!23;CL:0000337!2.39e-10!23;CL:0002321!5.26e-09!70;CL:0000220!5.26e-09!70;CL:0002319!6.31e-09!43;CL:0000221!9.62e-09!44;CL:0000133!9.62e-09!44;CL:0000540!1.17e-08!33;CL:0000047!1.17e-08!33;CL:0000031!1.17e-08!33;CL:0000404!1.17e-08!33;CL:0000055!3.65e-07!50;CL:0000393!4.65e-07!39;CL:0000211!4.65e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,2.39e-10,23;CL:0000337,2.39e-10,23;CL:0002321,5.26e-09,70;CL:0002319,6.30e-09,43;CL:0000221,9.62e-09,44;CL:0000133,9.62e-09,44;CL:0000540,1.17e-08,33;CL:0000047,1.17e-08,33;CL:0000031,1.17e-08,33;CL:0000404,1.17e-08,33;CL:0000393,4.65e-07,39;CL:0000211,4.65e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.48e-22!73;UBERON:0005743!3.48e-22!73;UBERON:0000073!3.74e-22!75;UBERON:0001016!3.74e-22!75;UBERON:0004121!6.93e-21!102;UBERON:0000924!6.93e-21!102;UBERON:0006601!6.93e-21!102;UBERON:0001049!7.08e-20!52;UBERON:0005068!7.08e-20!52;UBERON:0006241!7.08e-20!52;UBERON:0007135!7.08e-20!52;UBERON:0000955!6.83e-19!50;UBERON:0006238!6.83e-19!50;UBERON:0002616!2.19e-18!49;UBERON:0002020!3.75e-16!34;UBERON:0000033!6.25e-16!63;UBERON:0003080!3.79e-14!40;UBERON:0002780!1.50e-13!39;UBERON:0001890!1.50e-13!39;UBERON:0006240!1.50e-13!39;UBERON:0002791!2.54e-13!29;UBERON:0003528!2.54e-13!29;UBERON:0001893!2.54e-13!29;UBERON:0002346!3.51e-13!71;UBERON:0003075!3.51e-13!71;UBERON:0007284!3.51e-13!71;UBERON:0003056!2.75e-11!49;UBERON:0007023!2.11e-09!51;UBERON:0000956!3.97e-09!21;UBERON:0001869!3.97e-09!21;UBERON:0000203!3.97e-09!21;UBERON:0002619!1.15e-08!17;UBERON:0002021!9.30e-08!10;UBERON:0000411!9.30e-08!10;UBERON:0001950!9.30e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0004121,4.02e-24,95;UBERON:0000924,4.02e-24,95;UBERON:0006601,4.02e-24,95;UBERON:0001017,3.48e-22,73;UBERON:0001016,3.74e-22,75;UBERON:0000073,2.32e-21,54;UBERON:0001049,7.08e-20,52;UBERON:0005068,7.08e-20,52;UBERON:0006241,7.08e-20,52;UBERON:0007135,7.08e-20,52;UBERON:0010371,9.79e-19,73;UBERON:0000955,7.59e-17,47;UBERON:0006238,7.59e-17,47;UBERON:0002616,2.36e-16,46;UBERON:0002346,2.62e-16,64;UBERON:0003075,2.62e-16,64;UBERON:0007284,2.62e-16,64;UBERON:0002020,3.74e-16,34;UBERON:0003080,3.79e-14,40;UBERON:0002780,1.50e-13,39;UBERON:0001890,1.50e-13,39;UBERON:0006240,1.50e-13,39;UBERON:0003528,2.54e-13,29;UBERON:0002791,2.54e-13,29;UBERON:0001893,2.54e-13,29;UBERON:0003056,2.75e-11,49;UBERON:0007023,2.11e-09,51;UBERON:0000956,3.97e-09,21;UBERON:0001869,3.97e-09,21;UBERON:0000203,3.97e-09,21;UBERON:0002619,1.15e-08,17;UBERON:0002021,9.30e-08,10;UBERON:0000411,9.30e-08,10;UBERON:0001950,9.30e-08,10;UBERON:0011216,4.19e-07,194|phase1_expression=16.9757777931082,61.7686471521669,60.0598995994188,52.3263085560816,60.1074875935617,48.1813510387124,48.1242039626783,1.80772652818207,14.6420271037733,11.4691617897777,3.5955773327356,3.35043067780413,3.42401459862411,2.71003247498892,1.99865857089398,1.82227740650843,1.39912375625629,2.36596624018678,3.01651753932625,2.97072756258621,36.9938312157154,5.95745707205312,1.82839852397255,25.5987876469451,29.3643879765978,43.6416292727415,28.861053742658,34.0444547643705,22.4227634958521,25.7070732355129,22.6165120868411,2.54012269383853,2.46025915033828,0,28.8851619751275,31.5845826181135,32.8712663582414,0,0,0,0.588231488031014,0,0,17.7514513345564,18.9574861380492,18.1711284640065,48.5082633495784,18.9681886050988,32.9529274101708,30.1366343565139,27.4373386385711,15.8127820801469,5.03347818173209,7.97898356212479,3.6970317905671,14.1492689819771,14.6132054368766,27.3306208907044,64.9435839359309,58.1890077199236,56.4109949120499,66.4135282855499,51.5790981744461,15.2982951937838,17.7995945262055,19.1829631035447,31.7576117149509,25.7426264565442,28.4109537725229,24.8410926530311,27.1319200143283,96.5500327284856,72.8866185140325,24.6206506422058,28.8494867764891,50.5570332635512,110.115880999389,131.007208875403,122.885226604995,70.6910502233839,73.0071395947229,59.9050376140274,105.251990623521,79.9122906244986,99.4716593027034,80.4336038343113,82.4332031826806,71.5773871969154,29.7603939799413,21.0088937096864,20.5803786978191,12.0459342777394,44.8781080247115,12.4131734076698,13.6453047664011,12.5447528387254,16.2915527352832,16.0204503223374,10.9110121933205,16.9602995764963,19.7180787687353,7.69958864485907,5.09610479413291,28.4426681261332,40.9168067511195,39.0174192831652,43.4751022712714,17.9268691158924,3.10725460376606,22.5632051378534,8.84775166507293,8.8294988710521,14.0675453326196,11.6056433225519,19.519725384527,12.1896593589785,65.7538614173435,11.7125479105128,3.5384422077995,10.3530783966342,7.72945314611377,8.24287930329878,39.1422698558057,67.0468025156443,64.0906922849173,30.654846625031,3.23500836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| ||
|EntrezGene=217882 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q80U49 | |||
|association_with_transcript=0bp_to_ENSMUST00000092279,ENSMUST00000101018,NM_001024602,uc007pfb.1_5end | |||
|description=CAGE_peak_1_at_AW555464_5end | |||
|id=chr12:113960374..113960450,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.39e-10!23;CL:0000337!2.39e-10!23;CL:0002321!5.26e-09!70;CL:0000220!5.26e-09!70;CL:0002319!6.31e-09!43;CL:0000221!9.62e-09!44;CL:0000133!9.62e-09!44;CL:0000540!1.17e-08!33;CL:0000047!1.17e-08!33;CL:0000031!1.17e-08!33;CL:0000404!1.17e-08!33;CL:0000055!3.65e-07!50;CL:0000393!4.65e-07!39;CL:0000211!4.65e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.39e-10,23;CL:0000337,2.39e-10,23;CL:0002321,5.26e-09,70;CL:0002319,6.30e-09,43;CL:0000221,9.62e-09,44;CL:0000133,9.62e-09,44;CL:0000540,1.17e-08,33;CL:0000047,1.17e-08,33;CL:0000031,1.17e-08,33;CL:0000404,1.17e-08,33;CL:0000393,4.65e-07,39;CL:0000211,4.65e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.48e-22!73;UBERON:0005743!3.48e-22!73;UBERON:0000073!3.74e-22!75;UBERON:0001016!3.74e-22!75;UBERON:0004121!6.93e-21!102;UBERON:0000924!6.93e-21!102;UBERON:0006601!6.93e-21!102;UBERON:0001049!7.08e-20!52;UBERON:0005068!7.08e-20!52;UBERON:0006241!7.08e-20!52;UBERON:0007135!7.08e-20!52;UBERON:0000955!6.83e-19!50;UBERON:0006238!6.83e-19!50;UBERON:0002616!2.19e-18!49;UBERON:0002020!3.75e-16!34;UBERON:0000033!6.25e-16!63;UBERON:0003080!3.79e-14!40;UBERON:0002780!1.50e-13!39;UBERON:0001890!1.50e-13!39;UBERON:0006240!1.50e-13!39;UBERON:0002791!2.54e-13!29;UBERON:0003528!2.54e-13!29;UBERON:0001893!2.54e-13!29;UBERON:0002346!3.51e-13!71;UBERON:0003075!3.51e-13!71;UBERON:0007284!3.51e-13!71;UBERON:0003056!2.75e-11!49;UBERON:0007023!2.11e-09!51;UBERON:0000956!3.97e-09!21;UBERON:0001869!3.97e-09!21;UBERON:0000203!3.97e-09!21;UBERON:0002619!1.15e-08!17;UBERON:0002021!9.30e-08!10;UBERON:0000411!9.30e-08!10;UBERON:0001950!9.30e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,4.02e-24,95;UBERON:0000924,4.02e-24,95;UBERON:0006601,4.02e-24,95;UBERON:0001017,3.48e-22,73;UBERON:0001016,3.74e-22,75;UBERON:0000073,2.32e-21,54;UBERON:0001049,7.08e-20,52;UBERON:0005068,7.08e-20,52;UBERON:0006241,7.08e-20,52;UBERON:0007135,7.08e-20,52;UBERON:0010371,9.79e-19,73;UBERON:0000955,7.59e-17,47;UBERON:0006238,7.59e-17,47;UBERON:0002616,2.36e-16,46;UBERON:0002346,2.62e-16,64;UBERON:0003075,2.62e-16,64;UBERON:0007284,2.62e-16,64;UBERON:0002020,3.74e-16,34;UBERON:0003080,3.79e-14,40;UBERON:0002780,1.50e-13,39;UBERON:0001890,1.50e-13,39;UBERON:0006240,1.50e-13,39;UBERON:0003528,2.54e-13,29;UBERON:0002791,2.54e-13,29;UBERON:0001893,2.54e-13,29;UBERON:0003056,2.75e-11,49;UBERON:0007023,2.11e-09,51;UBERON:0000956,3.97e-09,21;UBERON:0001869,3.97e-09,21;UBERON:0000203,3.97e-09,21;UBERON:0002619,1.15e-08,17;UBERON:0002021,9.30e-08,10;UBERON:0000411,9.30e-08,10;UBERON:0001950,9.30e-08,10;UBERON:0011216,4.19e-07,194 | |||
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| |||
|short_description=p1@AW555464 | |||
}} |
Revision as of 22:22, 12 September 2013
Short description: | p1@AW555464 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_AW555464_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000092279, ENSMUST00000101018, NM_001024602, uc007pfb.1_5end |
EntrezGene: | AW555464 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.39e-10 | 23 |
neuroblast (sensu Vertebrata) | 2.39e-10 | 23 |
embryonic cell | 5.26e-09 | 70 |
neural cell | 6.30e-09 | 43 |
ectodermal cell | 9.62e-09 | 44 |
neurectodermal cell | 9.62e-09 | 44 |
neuron | 1.17e-08 | 33 |
neuronal stem cell | 1.17e-08 | 33 |
neuroblast | 1.17e-08 | 33 |
electrically signaling cell | 1.17e-08 | 33 |
electrically responsive cell | 4.65e-07 | 39 |
electrically active cell | 4.65e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 4.02e-24 | 95 |
ectoderm | 4.02e-24 | 95 |
presumptive ectoderm | 4.02e-24 | 95 |
central nervous system | 3.48e-22 | 73 |
nervous system | 3.74e-22 | 75 |
regional part of nervous system | 2.32e-21 | 54 |
neural tube | 7.08e-20 | 52 |
neural rod | 7.08e-20 | 52 |
future spinal cord | 7.08e-20 | 52 |
neural keel | 7.08e-20 | 52 |
ecto-epithelium | 9.79e-19 | 73 |
brain | 7.59e-17 | 47 |
future brain | 7.59e-17 | 47 |
regional part of brain | 2.36e-16 | 46 |
neurectoderm | 2.62e-16 | 64 |
neural plate | 2.62e-16 | 64 |
presumptive neural plate | 2.62e-16 | 64 |
gray matter | 3.74e-16 | 34 |
anterior neural tube | 3.79e-14 | 40 |
regional part of forebrain | 1.50e-13 | 39 |
forebrain | 1.50e-13 | 39 |
future forebrain | 1.50e-13 | 39 |
brain grey matter | 2.54e-13 | 29 |
regional part of telencephalon | 2.54e-13 | 29 |
telencephalon | 2.54e-13 | 29 |
pre-chordal neural plate | 2.75e-11 | 49 |
adult organism | 2.11e-09 | 51 |
cerebral cortex | 3.97e-09 | 21 |
cerebral hemisphere | 3.97e-09 | 21 |
pallium | 3.97e-09 | 21 |
regional part of cerebral cortex | 1.15e-08 | 17 |
occipital lobe | 9.30e-08 | 10 |
visual cortex | 9.30e-08 | 10 |
neocortex | 9.30e-08 | 10 |
organ system subdivision | 4.19e-07 | 194 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.