FFCP PHASE1:Mm9::chr13:54691565..54691579,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=67044|HGNC=|MCL_coexpression_id=2858|UniProt=Q9CQJ1|association_with_transcript=0bp_to_ENSMUST00000026986_5end|description=CAGE_peak_2_at_Higd2a_5end|id=chr13:54691565..54691579,+|ontology_enrichment_celltype=CL:0000117!2.98e-10!23;CL:0000337!2.98e-10!23;CL:0002319!5.07e-07!43;CL:0000221!5.92e-07!44;CL:0000133!5.92e-07!44|ontology_enrichment_celltype_v019_2=CL:0000117,2.98e-10,23;CL:0000337,2.98e-10,23;CL:0002319,5.07e-07,43;CL:0000221,5.92e-07,44;CL:0000133,5.92e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!5.70e-13!52;UBERON:0005068!5.70e-13!52;UBERON:0006241!5.70e-13!52;UBERON:0007135!5.70e-13!52;UBERON:0002020!5.62e-12!34;UBERON:0000955!7.08e-12!50;UBERON:0006238!7.08e-12!50;UBERON:0002616!1.12e-11!49;UBERON:0001017!1.55e-11!73;UBERON:0005743!1.55e-11!73;UBERON:0000073!2.06e-11!75;UBERON:0001016!2.06e-11!75;UBERON:0002791!1.02e-09!29;UBERON:0003528!1.02e-09!29;UBERON:0001893!1.02e-09!29;UBERON:0000033!1.55e-09!63;UBERON:0002346!1.59e-08!71;UBERON:0003075!1.59e-08!71;UBERON:0007284!1.59e-08!71;UBERON:0000025!1.87e-08!114;UBERON:0004111!3.13e-08!122;UBERON:0003080!7.23e-08!40;UBERON:0004121!1.25e-07!102;UBERON:0000924!1.25e-07!102;UBERON:0006601!1.25e-07!102;UBERON:0002780!1.73e-07!39;UBERON:0001890!1.73e-07!39;UBERON:0006240!1.73e-07!39;UBERON:0003076!9.77e-07!12;UBERON:0003057!9.77e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.20e-14,54;UBERON:0001049,5.70e-13,52;UBERON:0005068,5.70e-13,52;UBERON:0006241,5.70e-13,52;UBERON:0007135,5.70e-13,52;UBERON:0010314,7.86e-13,92;UBERON:0002020,5.62e-12,34;UBERON:0001017,1.55e-11,73;UBERON:0001016,2.06e-11,75;UBERON:0000955,1.03e-10,47;UBERON:0006238,1.03e-10,47;UBERON:0002616,1.61e-10,46;UBERON:0003528,1.02e-09,29;UBERON:0002791,1.02e-09,29;UBERON:0001893,1.02e-09,29;UBERON:0002346,8.54e-09,64;UBERON:0003075,8.54e-09,64;UBERON:0007284,8.54e-09,64;UBERON:0000025,1.87e-08,114;UBERON:0004111,3.13e-08,122;UBERON:0003080,7.23e-08,40;UBERON:0004121,1.15e-07,95;UBERON:0000924,1.15e-07,95;UBERON:0006601,1.15e-07,95;UBERON:0002780,1.73e-07,39;UBERON:0001890,1.73e-07,39;UBERON:0006240,1.73e-07,39;UBERON:0003076,9.77e-07,12;UBERON:0003057,9.77e-07,12|phase1_expression=19.2178616525753,14.6569671208532,15.4699741392442,7.56160528267075,11.0197060588196,12.0873075776561,10.7461814673942,10.975482492534,3.37892933164,4.44722600011788,6.33506482434368,6.22222840163624,10.785645985666,14.1621051918776,6.99530499812892,8.09901069559304,7.69518065940961,8.83294063003066,9.04955261797876,10.6097412949508,29.0848052316659,14.3971879241284,13.0599894569468,20.6390225403495,21.3350631392468,32.1569899904411,29.7225777349762,27.149375318422,29.8336768546507,24.9509828462331,24.6120866827388,9.52546010189447,5.53558308826113,31.6963362030877,27.1520522566198,23.1066157048304,20.2127662699745,18.8339233831608,36.7227611926186,29.8408534065065,24.1174910092716,23.9065919735456,29.6161315349004,14.4781340671914,17.132701376098,17.2533947031981,45.3786979721863,44.0410815888502,36.6875925166568,33.0530828426282,26.7374065304442,25.8754615856949,8.38913030288682,5.80289713609076,8.4023449785616,16.2073444702647,10.3152038377952,10.3134418455488,29.3358868246417,37.0293685490423,25.9870875437533,29.1406297579454,27.5681386794453,30.5965903875676,32.6325899647102,26.9982443679518,49.1344181250184,63.7802386833781,23.1227835447905,25.2461104680262,23.7667206327062,36.8489769880907,35.1180980113066,21.8033622602618,23.9613677545591,23.8996884518605,23.1243350098716,27.197403012145,34.2542569161423,22.8163277773235,41.2609272646868,24.4829284161677,43.5525478442154,30.9519435517424,35.7547899797736,26.2219441071564,29.4709379254143,23.8591290656385,13.4792624133068,20.1776065485117,9.85539261585705,36.1378028332182,21.0791113449403,21.0484244738749,20.7928453583254,20.1612099193801,29.4933282276679,23.1785238706159,23.1209544096553,20.8470348961101,15.6336195952115,20.5322363862909,5.09610479413291,0,16.0203370348298,10.387754484479,11.1215377903252,22.0374887857786,6.21450920753212,9.50029690014878,18.0424739836781,12.4830846107978,24.2146272118861,22.0055055206829,15.4041206347773,21.2376539347152,16.0676729027343,26.8954803871036,9.73071607144862,13.9119490954772,18.3298460322127,15.5160081003271,20.5030937339934,29.2780797011547,28.4847521266299,19.4147361958529,10.7833612055328,22.1964010467561,15.629637929987,28.759802765726,30.1950397860293,22.1151659718641,31.8098505951866,30.174423964979,28.4669621046597,27.5810147215188,9.980257657331,12.8139179728396,16.6797020566225,26.0947901299228,11.9710807525687,11.0353010128067,12.2442248267637,14.3169576943929,10.3415478710018,12.811372028485,12.8371362646828,13.7112786491678,11.6406716183735,12.2918952109083,12.6684809398043,12.7133524807993,6.39508673218875,11.4923214952315,10.4948889568051,11.7430217422911,19.6619692447706,21.8745721047508,14.2081749697796,19.6769483908727,19.2311369184499,20.7071370680167,20.3600472603281,26.3664070541521,24.682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| ||
|EntrezGene=67044 | |||
|HGNC= | |||
|MCL_coexpression_id=2858 | |||
|UniProt=Q9CQJ1 | |||
|association_with_transcript=0bp_to_ENSMUST00000026986_5end | |||
|description=CAGE_peak_2_at_Higd2a_5end | |||
|id=chr13:54691565..54691579,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.98e-10!23;CL:0000337!2.98e-10!23;CL:0002319!5.07e-07!43;CL:0000221!5.92e-07!44;CL:0000133!5.92e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.98e-10,23;CL:0000337,2.98e-10,23;CL:0002319,5.07e-07,43;CL:0000221,5.92e-07,44;CL:0000133,5.92e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.70e-13!52;UBERON:0005068!5.70e-13!52;UBERON:0006241!5.70e-13!52;UBERON:0007135!5.70e-13!52;UBERON:0002020!5.62e-12!34;UBERON:0000955!7.08e-12!50;UBERON:0006238!7.08e-12!50;UBERON:0002616!1.12e-11!49;UBERON:0001017!1.55e-11!73;UBERON:0005743!1.55e-11!73;UBERON:0000073!2.06e-11!75;UBERON:0001016!2.06e-11!75;UBERON:0002791!1.02e-09!29;UBERON:0003528!1.02e-09!29;UBERON:0001893!1.02e-09!29;UBERON:0000033!1.55e-09!63;UBERON:0002346!1.59e-08!71;UBERON:0003075!1.59e-08!71;UBERON:0007284!1.59e-08!71;UBERON:0000025!1.87e-08!114;UBERON:0004111!3.13e-08!122;UBERON:0003080!7.23e-08!40;UBERON:0004121!1.25e-07!102;UBERON:0000924!1.25e-07!102;UBERON:0006601!1.25e-07!102;UBERON:0002780!1.73e-07!39;UBERON:0001890!1.73e-07!39;UBERON:0006240!1.73e-07!39;UBERON:0003076!9.77e-07!12;UBERON:0003057!9.77e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.20e-14,54;UBERON:0001049,5.70e-13,52;UBERON:0005068,5.70e-13,52;UBERON:0006241,5.70e-13,52;UBERON:0007135,5.70e-13,52;UBERON:0010314,7.86e-13,92;UBERON:0002020,5.62e-12,34;UBERON:0001017,1.55e-11,73;UBERON:0001016,2.06e-11,75;UBERON:0000955,1.03e-10,47;UBERON:0006238,1.03e-10,47;UBERON:0002616,1.61e-10,46;UBERON:0003528,1.02e-09,29;UBERON:0002791,1.02e-09,29;UBERON:0001893,1.02e-09,29;UBERON:0002346,8.54e-09,64;UBERON:0003075,8.54e-09,64;UBERON:0007284,8.54e-09,64;UBERON:0000025,1.87e-08,114;UBERON:0004111,3.13e-08,122;UBERON:0003080,7.23e-08,40;UBERON:0004121,1.15e-07,95;UBERON:0000924,1.15e-07,95;UBERON:0006601,1.15e-07,95;UBERON:0002780,1.73e-07,39;UBERON:0001890,1.73e-07,39;UBERON:0006240,1.73e-07,39;UBERON:0003076,9.77e-07,12;UBERON:0003057,9.77e-07,12 | |||
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| |||
|short_description=p2@Higd2a | |||
}} |
Revision as of 00:47, 13 September 2013
Short description: | p2@Higd2a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Higd2a_5end |
Coexpression cluster: | MCL_coexpression_mm9:2858 |
Association with transcript: | 0bp_to_ENSMUST00000026986_5end |
EntrezGene: | Higd2a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.98e-10 | 23 |
neuroblast (sensu Vertebrata) | 2.98e-10 | 23 |
neural cell | 5.07e-07 | 43 |
ectodermal cell | 5.92e-07 | 44 |
neurectodermal cell | 5.92e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 6.20e-14 | 54 |
neural tube | 5.70e-13 | 52 |
neural rod | 5.70e-13 | 52 |
future spinal cord | 5.70e-13 | 52 |
neural keel | 5.70e-13 | 52 |
structure with developmental contribution from neural crest | 7.86e-13 | 92 |
gray matter | 5.62e-12 | 34 |
central nervous system | 1.55e-11 | 73 |
nervous system | 2.06e-11 | 75 |
brain | 1.03e-10 | 47 |
future brain | 1.03e-10 | 47 |
regional part of brain | 1.61e-10 | 46 |
brain grey matter | 1.02e-09 | 29 |
regional part of telencephalon | 1.02e-09 | 29 |
telencephalon | 1.02e-09 | 29 |
neurectoderm | 8.54e-09 | 64 |
neural plate | 8.54e-09 | 64 |
presumptive neural plate | 8.54e-09 | 64 |
tube | 1.87e-08 | 114 |
anatomical conduit | 3.13e-08 | 122 |
anterior neural tube | 7.23e-08 | 40 |
ectoderm-derived structure | 1.15e-07 | 95 |
ectoderm | 1.15e-07 | 95 |
presumptive ectoderm | 1.15e-07 | 95 |
regional part of forebrain | 1.73e-07 | 39 |
forebrain | 1.73e-07 | 39 |
future forebrain | 1.73e-07 | 39 |
posterior neural tube | 9.77e-07 | 12 |
chordal neural plate | 9.77e-07 | 12 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.