FFCP PHASE1:Mm9::chr19:4096880..4096945,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=52004|HGNC=|UniProt=Q9CPY4|association_with_transcript=-236bp_to_ENSMUST00000025779_5end|description=CAGE_peak_3_at_Cdk2ap2_5end|id=chr19:4096880..4096945,+|ontology_enrichment_celltype=CL:0000144!1.62e-21!121;CL:0000012!1.62e-21!121;CL:0002371!2.91e-20!118;CL:0000548!5.85e-20!115;CL:0000004!5.85e-20!115;CL:0000255!5.85e-20!115;CL:0000034!2.40e-14!97;CL:0002321!4.35e-14!70;CL:0000220!4.35e-14!70;CL:0000723!7.22e-13!91;CL:0000048!7.22e-13!91;CL:0000221!8.10e-13!44;CL:0000133!8.10e-13!44;CL:0002319!2.27e-12!43;CL:0000055!1.36e-11!50;CL:0000393!6.16e-08!39;CL:0000211!6.16e-08!39;CL:0000063!7.83e-08!66;CL:0000540!8.56e-08!33;CL:0000047!8.56e-08!33;CL:0000031!8.56e-08!33;CL:0000404!8.56e-08!33;CL:0000219!4.84e-07!54|ontology_enrichment_celltype_v019_2=CL:0000034,1.91e-14,97;CL:0002321,2.55e-14,70;CL:0000723,5.82e-13,91;CL:0000048,5.82e-13,91;CL:0000221,7.75e-13,44;CL:0000133,7.75e-13,44;CL:0002319,2.17e-12,43;CL:0000393,6.01e-08,39;CL:0000211,6.01e-08,39;CL:0000540,8.35e-08,33;CL:0000047,8.35e-08,33;CL:0000031,8.35e-08,33;CL:0000404,8.35e-08,33;CL:0000219,4.09e-07,54|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.32e-16!75;UBERON:0001016!2.32e-16!75;UBERON:0001017!3.94e-16!73;UBERON:0005743!3.94e-16!73;UBERON:0004121!5.05e-11!102;UBERON:0000924!5.05e-11!102;UBERON:0006601!5.05e-11!102;UBERON:0000955!6.69e-09!50;UBERON:0006238!6.69e-09!50;UBERON:0001049!1.14e-08!52;UBERON:0005068!1.14e-08!52;UBERON:0006241!1.14e-08!52;UBERON:0007135!1.14e-08!52;UBERON:0002616!2.11e-08!49;UBERON:0000064!3.80e-08!99;UBERON:0002020!2.80e-07!34;UBERON:0000033!5.49e-07!63;UBERON:0000480!6.66e-07!308;UBERON:0000467!6.66e-07!308|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.18e-16,75;UBERON:0001017,3.71e-16,73;UBERON:0004121,7.07e-12,95;UBERON:0000924,7.07e-12,95;UBERON:0006601,7.07e-12,95;UBERON:0000073,1.40e-09,54;UBERON:0011216,4.18e-09,194;UBERON:0001049,1.10e-08,52;UBERON:0005068,1.10e-08,52;UBERON:0006241,1.10e-08,52;UBERON:0007135,1.10e-08,52;UBERON:0000955,3.46e-08,47;UBERON:0006238,3.46e-08,47;UBERON:0002616,1.07e-07,46;UBERON:0002020,2.73e-07,34;UBERON:0002346,9.15e-07,64;UBERON:0003075,9.15e-07,64;UBERON:0007284,9.15e-07,64|phase1_expression=4.00372117761985,6.63053274514786,6.82498859084304,3.93203474698879,3.00537437967808,5.87577451691614,3.50418960893289,6.45616617207881,3.66050677594334,2.10658073689794,2.05461561870606,3.5099749957948,7.53283211697305,9.26656265641372,3.33109761815663,1.82227740650843,3.49780939064073,4.10100814965709,2.4680598049033,5.09267582157636,2.8064285749853,5.36171136484781,2.61199789138935,4.63978026100879,5.96464130774642,6.31655160526522,6.8921919385452,6.03319451520489,6.65081968097309,2.01624103807945,6.87364583031445,1.27006134691926,1.84519436275371,0,4.04392267651784,6.4831511689812,5.10423390655923,2.92972141515835,3.1253413780952,3.14114246384279,6.47054636834116,5.46436387966757,5.82612423637384,3.14742044938943,3.85232338634155,1.46837401729345,8.60630478782843,6.1047043786525,7.68901639570651,7.58276606389705,5.45947044338914,10.062679505548,2.01339127269284,10.8804321301702,6.72187598284928,3.34437266846731,3.15186783932632,4.12537673821954,5.86717736492834,2.64495489636016,6.33831403506179,1.35537812827653,2.66788438833342,4.49949858640699,6.92206453796882,6.3943210345149,13.7816050838466,21.5162250980071,2.69592992002042,2.16009501330705,2.52389953621658,4.85606673486466,5.96345060569357,2.08234358665422,2.58782771749238,5.51531271966013,6.60695285996332,4.08599481872601,2.91852413186863,5.93488294785872,4.84884511092771,4.16730696445408,3.07101298901519,4.50210088025344,4.27835093775068,3.83017161115768,2.13557521198654,5.40558392893372,2.95332153999418,3.70300644523249,7.8263411949453,0.860423876981386,3.39985666853875,2.69851595818909,1.94932925234301,0.448026887097336,1.68533304158102,1.70430322578058,1.81850203222008,1.7666978725517,5.49289337129054,0,2.54805239706646,0,3.030874574157,4.81383744402687,3.53867111510348,3.08296475241462,2.84831672011889,3.26572705942614,1.73485326766136,0.608930956624282,2.07553947530453,3.16517545160507,2.4693628498498,2.26199864393416,3.70792451601561,3.47038456607788,1.76922110389975,0.808834249737046,1.54589062922275,0.969750506270444,7.45567044872489,3.80615036115011,3.77004072264219,2.29911349687732,5.39168060276641,2.99951365496704,3.93917703926501,2.54644086988199,5.94750783664214,3.64397621127307,3.82413504423008,1.27857728665165,2.70124457927428,4.70499662896497,0.611036183101898,1.7416975885413,3.53811861807145,1.89397670297827,1.30120442962704,1.83921683546778,1.44049703844279,1.35634336052144,1.83698547708585,0.768682321709099,1.96773621575431,3.88055056108524,0.862271971731369,0.189106080167819,0.527853372491847,0.876782929710299,0.278047249225598,0.696504333044333,0.823128545631774,1.39323986772945,6.31991868581911,3.3455227924913,6.25159698670304,1.03562886267751,1.17263029990548,0.720248245844059,0.710234206755631,1.37734962223183,1.542671128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| ||
|EntrezGene=52004 | |||
|HGNC= | |||
|UniProt=Q9CPY4 | |||
|association_with_transcript=-236bp_to_ENSMUST00000025779_5end | |||
|description=CAGE_peak_3_at_Cdk2ap2_5end | |||
|id=chr19:4096880..4096945,+ | |||
|ontology_enrichment_celltype=CL:0000144!1.62e-21!121;CL:0000012!1.62e-21!121;CL:0002371!2.91e-20!118;CL:0000548!5.85e-20!115;CL:0000004!5.85e-20!115;CL:0000255!5.85e-20!115;CL:0000034!2.40e-14!97;CL:0002321!4.35e-14!70;CL:0000220!4.35e-14!70;CL:0000723!7.22e-13!91;CL:0000048!7.22e-13!91;CL:0000221!8.10e-13!44;CL:0000133!8.10e-13!44;CL:0002319!2.27e-12!43;CL:0000055!1.36e-11!50;CL:0000393!6.16e-08!39;CL:0000211!6.16e-08!39;CL:0000063!7.83e-08!66;CL:0000540!8.56e-08!33;CL:0000047!8.56e-08!33;CL:0000031!8.56e-08!33;CL:0000404!8.56e-08!33;CL:0000219!4.84e-07!54 | |||
|ontology_enrichment_celltype_v019_2=CL:0000034,1.91e-14,97;CL:0002321,2.55e-14,70;CL:0000723,5.82e-13,91;CL:0000048,5.82e-13,91;CL:0000221,7.75e-13,44;CL:0000133,7.75e-13,44;CL:0002319,2.17e-12,43;CL:0000393,6.01e-08,39;CL:0000211,6.01e-08,39;CL:0000540,8.35e-08,33;CL:0000047,8.35e-08,33;CL:0000031,8.35e-08,33;CL:0000404,8.35e-08,33;CL:0000219,4.09e-07,54 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.32e-16!75;UBERON:0001016!2.32e-16!75;UBERON:0001017!3.94e-16!73;UBERON:0005743!3.94e-16!73;UBERON:0004121!5.05e-11!102;UBERON:0000924!5.05e-11!102;UBERON:0006601!5.05e-11!102;UBERON:0000955!6.69e-09!50;UBERON:0006238!6.69e-09!50;UBERON:0001049!1.14e-08!52;UBERON:0005068!1.14e-08!52;UBERON:0006241!1.14e-08!52;UBERON:0007135!1.14e-08!52;UBERON:0002616!2.11e-08!49;UBERON:0000064!3.80e-08!99;UBERON:0002020!2.80e-07!34;UBERON:0000033!5.49e-07!63;UBERON:0000480!6.66e-07!308;UBERON:0000467!6.66e-07!308 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.18e-16,75;UBERON:0001017,3.71e-16,73;UBERON:0004121,7.07e-12,95;UBERON:0000924,7.07e-12,95;UBERON:0006601,7.07e-12,95;UBERON:0000073,1.40e-09,54;UBERON:0011216,4.18e-09,194;UBERON:0001049,1.10e-08,52;UBERON:0005068,1.10e-08,52;UBERON:0006241,1.10e-08,52;UBERON:0007135,1.10e-08,52;UBERON:0000955,3.46e-08,47;UBERON:0006238,3.46e-08,47;UBERON:0002616,1.07e-07,46;UBERON:0002020,2.73e-07,34;UBERON:0002346,9.15e-07,64;UBERON:0003075,9.15e-07,64;UBERON:0007284,9.15e-07,64 | |||
|phase1_expression=4.00372117761985,6.63053274514786,6.82498859084304,3.93203474698879,3.00537437967808,5.87577451691614,3.50418960893289,6.45616617207881,3.66050677594334,2.10658073689794,2.05461561870606,3.5099749957948,7.53283211697305,9.26656265641372,3.33109761815663,1.82227740650843,3.49780939064073,4.10100814965709,2.4680598049033,5.09267582157636,2.8064285749853,5.36171136484781,2.61199789138935,4.63978026100879,5.96464130774642,6.31655160526522,6.8921919385452,6.03319451520489,6.65081968097309,2.01624103807945,6.87364583031445,1.27006134691926,1.84519436275371,0,4.04392267651784,6.4831511689812,5.10423390655923,2.92972141515835,3.1253413780952,3.14114246384279,6.47054636834116,5.46436387966757,5.82612423637384,3.14742044938943,3.85232338634155,1.46837401729345,8.60630478782843,6.1047043786525,7.68901639570651,7.58276606389705,5.45947044338914,10.062679505548,2.01339127269284,10.8804321301702,6.72187598284928,3.34437266846731,3.15186783932632,4.12537673821954,5.86717736492834,2.64495489636016,6.33831403506179,1.35537812827653,2.66788438833342,4.49949858640699,6.92206453796882,6.3943210345149,13.7816050838466,21.5162250980071,2.69592992002042,2.16009501330705,2.52389953621658,4.85606673486466,5.96345060569357,2.08234358665422,2.58782771749238,5.51531271966013,6.60695285996332,4.08599481872601,2.91852413186863,5.93488294785872,4.84884511092771,4.16730696445408,3.07101298901519,4.50210088025344,4.27835093775068,3.83017161115768,2.13557521198654,5.40558392893372,2.95332153999418,3.70300644523249,7.8263411949453,0.860423876981386,3.39985666853875,2.69851595818909,1.94932925234301,0.448026887097336,1.68533304158102,1.70430322578058,1.81850203222008,1.7666978725517,5.49289337129054,0,2.54805239706646,0,3.030874574157,4.81383744402687,3.53867111510348,3.08296475241462,2.84831672011889,3.26572705942614,1.73485326766136,0.608930956624282,2.07553947530453,3.16517545160507,2.4693628498498,2.26199864393416,3.70792451601561,3.47038456607788,1.76922110389975,0.808834249737046,1.54589062922275,0.969750506270444,7.45567044872489,3.80615036115011,3.77004072264219,2.29911349687732,5.39168060276641,2.99951365496704,3.93917703926501,2.54644086988199,5.94750783664214,3.64397621127307,3.82413504423008,1.27857728665165,2.70124457927428,4.70499662896497,0.611036183101898,1.7416975885413,3.53811861807145,1.89397670297827,1.30120442962704,1.83921683546778,1.44049703844279,1.35634336052144,1.83698547708585,0.768682321709099,1.96773621575431,3.88055056108524,0.862271971731369,0.189106080167819,0.527853372491847,0.876782929710299,0.278047249225598,0.696504333044333,0.823128545631774,1.39323986772945,6.31991868581911,3.3455227924913,6.25159698670304,1.03562886267751,1.17263029990548,0.720248245844059,0.710234206755631,1.37734962223183,1.54267112887378,1.16266972375204,0.268273401399619,1.75148013550754,1.6455984991348,1.97000956894914,1.62137619091711,1.60819986167866,1.75640092232841,2.14730270016595,2.52347938276953,2.26390147234426,1.65209391491899,2.64450566663544,1.70630600428187,1.39342003116263,0.77320476793256,2.62188582010345,2.00140239460383,2.09248188723815,5.69434873853414,1.64698954724011,2.26201687920243,3.38226002469956,2.33956904542944,3.59527763461689,1.94524244887225,3.18626037206988,1.51734320762465,0.913988100877831,2.25415471346161,1.4255592949172,1.16371492300575,1.40271639780637,2.33975187359752,1.62371162777562,2.04098346193787,2.83813477020141,2.96452627087149,1.16791574001266,0.393117990226406,1.12431056192427,2.23146133527353,1.20588579876208,2.03700681425136,2.01387296215567,0.972811360650212,2.74561413188081,1.43768206527355,3.72140947668503,0.936113019343682,2.02063102357689,0.717589654087649,1.4473305640901,3.8798169934987,0.568474235311454,0.488894929326078,1.52770577197669,1.64283173801951,2.01007508930179,2.38043640886014,4.09780660501378,1.7339865851681,2.6575762757853,1.91345722388985,3.11340297959902,4.83517949224508,5.20736610893442,6.03165135757089,4.35124547054968,3.44234991113325,2.75936746304733,3.21101179975584,3.16471553798949,1.80328439914343,1.26235463602186,4.73262329124385,3.12350995437311,3.66219776145758,5.01834475700359,5.12436950389506,4.52922449262132,5.26253912177363,5.55286130031493,4.34816555741176,7.06906896127976,3.26462195979018,1.78065603667255,2.28041743095006,4.12425307431339,5.30980553359851,1.21390318077491,2.72091201268276,2.07465587731488,1.77181135728464,2.45948118355142,1.03371317267288,3.63533729477506,3.20847640546249,4.10847785316561,4.21674434299995,0,5.10659408630682,1.62054984628179,3.36332577835162,1.71469628025274,2.48276327099183,2.67553226403106,2.79733335023606,5.48036908406279,3.98941903708308,4.66030555900404,3.74898276693435,2.30840754118072,1.29171541356724,1.32688434841943,0.835606408021955,1.31312719796049,3.20628920292836,2.22510362412612,3.93003025835061,1.857481811669,1.48155621895769,1.50694765603753,2.32380187125743,3.43167259809784,4.24946074984638,4.3384950220334,5.38979897837253,3.81868247206045,0.632671987162271,0.813277868507395,0.97204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| |||
|short_description=p3@Cdk2ap2 | |||
}} |
Revision as of 17:35, 13 September 2013
Short description: | p3@Cdk2ap2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Cdk2ap2_5end |
Coexpression cluster: | NA |
Association with transcript: | -236bp_to_ENSMUST00000025779_5end |
EntrezGene: | Cdk2ap2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stem cell | 1.91e-14 | 97 |
embryonic cell | 2.55e-14 | 70 |
somatic stem cell | 5.82e-13 | 91 |
multi fate stem cell | 5.82e-13 | 91 |
ectodermal cell | 7.75e-13 | 44 |
neurectodermal cell | 7.75e-13 | 44 |
neural cell | 2.17e-12 | 43 |
electrically responsive cell | 6.01e-08 | 39 |
electrically active cell | 6.01e-08 | 39 |
neuron | 8.35e-08 | 33 |
neuronal stem cell | 8.35e-08 | 33 |
neuroblast | 8.35e-08 | 33 |
electrically signaling cell | 8.35e-08 | 33 |
motile cell | 4.09e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.18e-16 | 75 |
central nervous system | 3.71e-16 | 73 |
ectoderm-derived structure | 7.07e-12 | 95 |
ectoderm | 7.07e-12 | 95 |
presumptive ectoderm | 7.07e-12 | 95 |
regional part of nervous system | 1.40e-09 | 54 |
organ system subdivision | 4.18e-09 | 194 |
neural tube | 1.10e-08 | 52 |
neural rod | 1.10e-08 | 52 |
future spinal cord | 1.10e-08 | 52 |
neural keel | 1.10e-08 | 52 |
brain | 3.46e-08 | 47 |
future brain | 3.46e-08 | 47 |
regional part of brain | 1.07e-07 | 46 |
gray matter | 2.73e-07 | 34 |
neurectoderm | 9.15e-07 | 64 |
neural plate | 9.15e-07 | 64 |
presumptive neural plate | 9.15e-07 | 64 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.