FFCP PHASE1:Mm9::chr1:24685452..24685466,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=68421|HGNC=|MCL_coexpression_id=3260|UniProt=Q8K0B2|association_with_transcript=69bp_to_ENSMUST00000095062,NM_026719,uc007amt.1_5end|description=CAGE_peak_4_at_Lmbrd1_5end|id=chr1:24685452..24685466,+|ontology_enrichment_celltype=CL:0000540!1.37e-07!33;CL:0000047!1.37e-07!33;CL:0000031!1.37e-07!33;CL:0000404!1.37e-07!33;CL:0000117!5.44e-07!23;CL:0000337!5.44e-07!23;CL:0000393!7.01e-07!39;CL:0000211!7.01e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,5.68e-08,33;CL:0000047,5.68e-08,33;CL:0000031,5.68e-08,33;CL:0000404,5.68e-08,33;CL:0000117,2.90e-07,23;CL:0000337,2.90e-07,23;CL:0000393,2.96e-07,39;CL:0000211,2.96e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.33e-21!73;UBERON:0005743!6.33e-21!73;UBERON:0004121!1.85e-20!102;UBERON:0000924!1.85e-20!102;UBERON:0006601!1.85e-20!102;UBERON:0000073!7.57e-20!75;UBERON:0001016!7.57e-20!75;UBERON:0000033!3.80e-19!63;UBERON:0002346!1.05e-18!71;UBERON:0003075!1.05e-18!71;UBERON:0007284!1.05e-18!71;UBERON:0001049!6.18e-18!52;UBERON:0005068!6.18e-18!52;UBERON:0006241!6.18e-18!52;UBERON:0007135!6.18e-18!52;UBERON:0000955!4.42e-17!50;UBERON:0006238!4.42e-17!50;UBERON:0002616!1.49e-16!49;UBERON:0003056!6.26e-16!49;UBERON:0003080!6.38e-14!40;UBERON:0002780!2.80e-13!39;UBERON:0001890!2.80e-13!39;UBERON:0006240!2.80e-13!39;UBERON:0002020!2.88e-11!34;UBERON:0004111!5.02e-11!122;UBERON:0000025!2.86e-10!114;UBERON:0002791!4.23e-09!29;UBERON:0003528!4.23e-09!29;UBERON:0001893!4.23e-09!29;UBERON:0000153!2.98e-08!94;UBERON:0007811!8.37e-08!86;UBERON:0002021!5.67e-07!10;UBERON:0000411!5.67e-07!10;UBERON:0001950!5.67e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.64e-23,95;UBERON:0000924,3.64e-23,95;UBERON:0006601,3.64e-23,95;UBERON:0001017,3.84e-23,73;UBERON:0002346,3.28e-22,64;UBERON:0003075,3.28e-22,64;UBERON:0007284,3.28e-22,64;UBERON:0001016,1.11e-21,75;UBERON:0010371,1.39e-21,73;UBERON:0000073,2.11e-20,54;UBERON:0010314,5.68e-20,92;UBERON:0001049,2.98e-19,52;UBERON:0005068,2.98e-19,52;UBERON:0006241,2.98e-19,52;UBERON:0007135,2.98e-19,52;UBERON:0003056,4.61e-17,49;UBERON:0000955,1.80e-16,47;UBERON:0006238,1.80e-16,47;UBERON:0002616,6.74e-16,46;UBERON:0003080,8.55e-15,40;UBERON:0002780,4.41e-14,39;UBERON:0001890,4.41e-14,39;UBERON:0006240,4.41e-14,39;UBERON:0002020,7.69e-12,34;UBERON:0004111,9.93e-11,122;UBERON:0000025,1.03e-09,114;UBERON:0003528,1.95e-09,29;UBERON:0002791,1.95e-09,29;UBERON:0001893,1.95e-09,29;UBERON:0002021,1.18e-07,10;UBERON:0000411,1.18e-07,10;UBERON:0001950,1.18e-07,10|phase1_expression=2.5623815536767,0,0,0.30246421130683,0,0.503637815735669,0,0.387369970324729,0,0,0,0,0.171200729931206,0,0,0.202475267389826,0,1.10411757875383,0.274228867211478,0,4.33720779770456,0.297872853602656,0,0.159992422793407,0.22940928106717,0.57423196411502,0,0,0.190023419456374,0.756090389279792,0.221730510655305,0,1.23012957516914,0,0.288851619751275,0.166234645358492,0.204169356262369,0.837063261473815,0,1.57057123192139,0,0,0,0.503587271902309,1.52065396829272,1.65192076945513,0,0.872100625521786,1.5378032791413,0.58328969722285,1.53985063787899,0,0.503347818173209,0,0,1.02903774414379,0.286533439938757,1.54701627683233,2.63011399117477,2.64495489636016,2.53532561402472,0.677689064138264,0,0,0,0.7104801149461,0.299600110518405,1.92109152660777,1.34796496001021,0.540023753326763,0.630974884054146,3.71346279724945,2.87129103237098,0.489963196859816,1.0543001812006,1.83843757322004,2.20231761998777,6.12899222808901,4.91540906419979,1.84640802822271,2.28719109006024,4.16730696445408,4.74611098302348,2.8138130501584,4.88954392885792,2.06240009831567,3.13217697758026,2.98239113320481,0.757261933331841,0.377857800533928,1.73918693221007,0,0.679971333707751,1.07940638327563,0.649776417447669,0,0.842666520790511,1.02258193546835,1.81850203222008,0.35333957451034,2.95771181531029,1.28326477414318,0,0,0.649473123033642,0.760079596425296,0.505524445014783,1.7127581957859,1.55362730188303,1.63286352971307,0.867426633830679,1.21786191324856,0.230615497256059,0.60289056221049,1.05829836422134,1.0053327306374,1.23597483867187,1.59059292611903,0,0.323533699894818,0.662524555381181,0.484875253135222,0,3.80615036115011,4.39838084308256,0.766371165625774,0.359445373517761,0,0.254140454146129,6.74057877321702,4.11750542536764,2.01046963380583,6.95297280769106,5.62574006126727,6.2336413367868,5.67844420737152,1.12023300235348,0.870848794270651,1.26361379216837,3.36706969418358,1.43132487258974,2.06911893990126,1.44049703844279,1.20563854268572,1.08858398642125,2.562274405697,2.15513966487376,3.10444044886819,1.07783996466421,2.08016688184601,1.75951124163949,0.876782929710299,1.66828349535359,0.696504333044333,1.02891068203972,0.796137067273973,0,0,0,0.414251545071004,0.469052119962192,1.2604344302271,1.42046841351126,1.37734962223183,0.462801338662135,0.930135779001631,0.536546802799238,2.21854150497622,2.13927804887525,2.46251196118643,2.10778904819225,2.04679982395465,2.85415149878366,2.41571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| ||
|EntrezGene=68421 | |||
|HGNC= | |||
|MCL_coexpression_id=3260 | |||
|UniProt=Q8K0B2 | |||
|association_with_transcript=69bp_to_ENSMUST00000095062,NM_026719,uc007amt.1_5end | |||
|description=CAGE_peak_4_at_Lmbrd1_5end | |||
|id=chr1:24685452..24685466,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.37e-07!33;CL:0000047!1.37e-07!33;CL:0000031!1.37e-07!33;CL:0000404!1.37e-07!33;CL:0000117!5.44e-07!23;CL:0000337!5.44e-07!23;CL:0000393!7.01e-07!39;CL:0000211!7.01e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.68e-08,33;CL:0000047,5.68e-08,33;CL:0000031,5.68e-08,33;CL:0000404,5.68e-08,33;CL:0000117,2.90e-07,23;CL:0000337,2.90e-07,23;CL:0000393,2.96e-07,39;CL:0000211,2.96e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.33e-21!73;UBERON:0005743!6.33e-21!73;UBERON:0004121!1.85e-20!102;UBERON:0000924!1.85e-20!102;UBERON:0006601!1.85e-20!102;UBERON:0000073!7.57e-20!75;UBERON:0001016!7.57e-20!75;UBERON:0000033!3.80e-19!63;UBERON:0002346!1.05e-18!71;UBERON:0003075!1.05e-18!71;UBERON:0007284!1.05e-18!71;UBERON:0001049!6.18e-18!52;UBERON:0005068!6.18e-18!52;UBERON:0006241!6.18e-18!52;UBERON:0007135!6.18e-18!52;UBERON:0000955!4.42e-17!50;UBERON:0006238!4.42e-17!50;UBERON:0002616!1.49e-16!49;UBERON:0003056!6.26e-16!49;UBERON:0003080!6.38e-14!40;UBERON:0002780!2.80e-13!39;UBERON:0001890!2.80e-13!39;UBERON:0006240!2.80e-13!39;UBERON:0002020!2.88e-11!34;UBERON:0004111!5.02e-11!122;UBERON:0000025!2.86e-10!114;UBERON:0002791!4.23e-09!29;UBERON:0003528!4.23e-09!29;UBERON:0001893!4.23e-09!29;UBERON:0000153!2.98e-08!94;UBERON:0007811!8.37e-08!86;UBERON:0002021!5.67e-07!10;UBERON:0000411!5.67e-07!10;UBERON:0001950!5.67e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.64e-23,95;UBERON:0000924,3.64e-23,95;UBERON:0006601,3.64e-23,95;UBERON:0001017,3.84e-23,73;UBERON:0002346,3.28e-22,64;UBERON:0003075,3.28e-22,64;UBERON:0007284,3.28e-22,64;UBERON:0001016,1.11e-21,75;UBERON:0010371,1.39e-21,73;UBERON:0000073,2.11e-20,54;UBERON:0010314,5.68e-20,92;UBERON:0001049,2.98e-19,52;UBERON:0005068,2.98e-19,52;UBERON:0006241,2.98e-19,52;UBERON:0007135,2.98e-19,52;UBERON:0003056,4.61e-17,49;UBERON:0000955,1.80e-16,47;UBERON:0006238,1.80e-16,47;UBERON:0002616,6.74e-16,46;UBERON:0003080,8.55e-15,40;UBERON:0002780,4.41e-14,39;UBERON:0001890,4.41e-14,39;UBERON:0006240,4.41e-14,39;UBERON:0002020,7.69e-12,34;UBERON:0004111,9.93e-11,122;UBERON:0000025,1.03e-09,114;UBERON:0003528,1.95e-09,29;UBERON:0002791,1.95e-09,29;UBERON:0001893,1.95e-09,29;UBERON:0002021,1.18e-07,10;UBERON:0000411,1.18e-07,10;UBERON:0001950,1.18e-07,10 | |||
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| |||
|short_description=p4@Lmbrd1 | |||
}} |
Revision as of 20:12, 13 September 2013
Short description: | p4@Lmbrd1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Lmbrd1_5end |
Coexpression cluster: | MCL_coexpression_mm9:3260 |
Association with transcript: | 69bp_to_ENSMUST00000095062, NM_026719, uc007amt.1_5end |
EntrezGene: | Lmbrd1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.68e-08 | 33 |
neuronal stem cell | 5.68e-08 | 33 |
neuroblast | 5.68e-08 | 33 |
electrically signaling cell | 5.68e-08 | 33 |
CNS neuron (sensu Vertebrata) | 2.90e-07 | 23 |
neuroblast (sensu Vertebrata) | 2.90e-07 | 23 |
electrically responsive cell | 2.96e-07 | 39 |
electrically active cell | 2.96e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 3.64e-23 | 95 |
ectoderm | 3.64e-23 | 95 |
presumptive ectoderm | 3.64e-23 | 95 |
central nervous system | 3.84e-23 | 73 |
neurectoderm | 3.28e-22 | 64 |
neural plate | 3.28e-22 | 64 |
presumptive neural plate | 3.28e-22 | 64 |
nervous system | 1.11e-21 | 75 |
ecto-epithelium | 1.39e-21 | 73 |
regional part of nervous system | 2.11e-20 | 54 |
structure with developmental contribution from neural crest | 5.68e-20 | 92 |
neural tube | 2.98e-19 | 52 |
neural rod | 2.98e-19 | 52 |
future spinal cord | 2.98e-19 | 52 |
neural keel | 2.98e-19 | 52 |
pre-chordal neural plate | 4.61e-17 | 49 |
brain | 1.80e-16 | 47 |
future brain | 1.80e-16 | 47 |
regional part of brain | 6.74e-16 | 46 |
anterior neural tube | 8.55e-15 | 40 |
regional part of forebrain | 4.41e-14 | 39 |
forebrain | 4.41e-14 | 39 |
future forebrain | 4.41e-14 | 39 |
gray matter | 7.69e-12 | 34 |
anatomical conduit | 9.93e-11 | 122 |
tube | 1.03e-09 | 114 |
brain grey matter | 1.95e-09 | 29 |
regional part of telencephalon | 1.95e-09 | 29 |
telencephalon | 1.95e-09 | 29 |
occipital lobe | 1.18e-07 | 10 |
visual cortex | 1.18e-07 | 10 |
neocortex | 1.18e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.