FFCP PHASE1:Mm9::chr1:79436590..79436610,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20254|HGNC=|MCL_coexpression_id=608|UniProt=Q4W8U9|association_with_transcript=-25bp_to_ENSMUST00000094810_5end|description=CAGE_peak_1_at_Scg2_5end|id=chr1:79436590..79436610,-|ontology_enrichment_celltype=CL:0000540!2.58e-08!33;CL:0000047!2.58e-08!33;CL:0000031!2.58e-08!33;CL:0000404!2.58e-08!33;CL:0000393!3.36e-08!39;CL:0000211!3.36e-08!39;CL:0000221!9.33e-07!44;CL:0000133!9.33e-07!44;CL:0002319!9.48e-07!43;CL:0000055!9.50e-07!50|ontology_enrichment_celltype_v019_2=CL:0000540,2.47e-08,33;CL:0000047,2.47e-08,33;CL:0000031,2.47e-08,33;CL:0000404,2.47e-08,33;CL:0000393,1.01e-07,39;CL:0000211,1.01e-07,39;CL:0000221,4.21e-07,44;CL:0000133,4.21e-07,44;CL:0002319,4.29e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!3.66e-25!71;UBERON:0003075!3.66e-25!71;UBERON:0007284!3.66e-25!71;UBERON:0004121!5.87e-24!102;UBERON:0000924!5.87e-24!102;UBERON:0006601!5.87e-24!102;UBERON:0000073!1.48e-23!75;UBERON:0001016!1.48e-23!75;UBERON:0001017!1.25e-22!73;UBERON:0005743!1.25e-22!73;UBERON:0000033!3.13e-19!63;UBERON:0001049!3.34e-19!52;UBERON:0005068!3.34e-19!52;UBERON:0006241!3.34e-19!52;UBERON:0007135!3.34e-19!52;UBERON:0000955!5.27e-19!50;UBERON:0006238!5.27e-19!50;UBERON:0002616!2.51e-18!49;UBERON:0003056!2.32e-16!49;UBERON:0003080!1.46e-15!40;UBERON:0002780!6.91e-15!39;UBERON:0001890!6.91e-15!39;UBERON:0006240!6.91e-15!39;UBERON:0002020!1.17e-10!34;UBERON:0007811!7.00e-10!86;UBERON:0002791!8.49e-09!29;UBERON:0003528!8.49e-09!29;UBERON:0001893!8.49e-09!29;UBERON:0001894!7.75e-08!10;UBERON:0006222!7.75e-08!10;UBERON:0000153!1.60e-07!94;UBERON:0000468!4.54e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.96e-25,75;UBERON:0001017,2.03e-24,73;UBERON:0000073,1.27e-21,54;UBERON:0002346,2.75e-21,64;UBERON:0003075,2.75e-21,64;UBERON:0007284,2.75e-21,64;UBERON:0004121,1.99e-20,95;UBERON:0000924,1.99e-20,95;UBERON:0006601,1.99e-20,95;UBERON:0001049,2.92e-20,52;UBERON:0005068,2.92e-20,52;UBERON:0006241,2.92e-20,52;UBERON:0007135,2.92e-20,52;UBERON:0000955,5.17e-18,47;UBERON:0006238,5.17e-18,47;UBERON:0002616,2.70e-17,46;UBERON:0003056,1.48e-16,49;UBERON:0010371,1.95e-16,73;UBERON:0003080,4.44e-16,40;UBERON:0002780,2.38e-15,39;UBERON:0001890,2.38e-15,39;UBERON:0006240,2.38e-15,39;UBERON:0010314,9.38e-15,92;UBERON:0002020,8.24e-11,34;UBERON:0003528,8.41e-09,29;UBERON:0002791,8.41e-09,29;UBERON:0001893,8.41e-09,29;UBERON:0001894,1.90e-08,10;UBERON:0006222,1.90e-08,10;UBERON:0000007,4.10e-07,8;UBERON:0003296,4.10e-07,8;UBERON:0010133,4.10e-07,8;UBERON:0002021,7.53e-07,10;UBERON:0000411,7.53e-07,10;UBERON:0001950,7.53e-07,10|phase1_expression=2.24208385946712,0.348975407639361,0,0.30246421130683,0,14.1018588405987,17.5209480446644,0,0,0,0,0,0,0,0,0,0,0,0,0,34.6976623816365,0,0,8.95957567643077,9.63518980482114,0,3.4460959692726,3.66301095566011,8.7410772949932,4.53654233567875,3.76941868114018,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,39.5316008443313,33.3530103712203,1.10128051297009,0,1.09012578190223,3.73466510648602,2.52758868796568,0,0,0,0,0,0.257259436035947,0.573066879877513,2.06268836910977,12.3413041124355,20.1016572123373,8.23980824558033,0,0,0,0,0,1.19840044207362,3.84218305321555,1.24427534770173,0.405017814995072,0.420649922702764,27.4224945027651,33.130281142742,4.77714116938321,3.35459148563827,1.83843757322004,156.364551019132,199.575309427148,288.780282521738,13.7161739239402,24.8846390598554,27.6084086395083,185.377511336917,417.569856643507,363.965426204362,72.7732606119959,92.9687075618142,24.6047268489397,28.397322499944,66.7296875742916,0,0.860423876981386,0,0.539703191637817,0,0,17.555552516469,0,0,0,5.35204995151386,2.56652954828636,0,0,0,0.253359865475099,0,10.7332846935916,0.258937883647172,1676.95084501533,30.706902837606,157.104186809065,186.798552777407,353.143146814795,412.501184632052,455.038727204755,0.247194967734374,1.87979163995885,0,0.323533699894818,0.220841518460394,0,14.9113408974498,69.6818296887482,61.7867785099692,21.2029355823131,0,0,0,390.204615649563,192.150253183823,32.5444771972319,117.852889090363,122.743419518559,315.214463596853,239.143621761875,0.407357455401265,0,0,47.1389757185702,6.24578126220978,0.689706313300419,1.44049703844279,4.52114453507145,9.45707338203457,21.5231050078548,17.7096259417887,111.242449417777,0,1.89106080167819,0,0,0,0,0.411564272815887,0.199034266818493,0,0,0,0,0.938104239924385,0.180062061461015,0.23674473558521,0,0,0,0,0,0,0,0.0810688095458557,0,0,0.134206418760372,94.8407668024214,12.1427442607556,11.8950761874167,16.6603856998033,0.426576501070468,1.39342003116263,3.22168653305233,9.4791256572971,8.00560957841533,17.5007576023554,24.6755112003146,17.2933902460211,23.8768448360256,26.6601672535142,28.4647567193915,23.3693046250098,18.371734239349,19.9141273254367,1.13800740571849,6.39791670614481,0,1.4255592949172,1.93952487167626,1.26244475802573,0.189709611372772,0,0,0.123397163921801,0,0.333690211432188,0.393117990226406,0,0,0,0.25462585178142,0,0,0,0,0,0,0.25257887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| ||
|EntrezGene=20254 | |||
|HGNC= | |||
|MCL_coexpression_id=608 | |||
|UniProt=Q4W8U9 | |||
|association_with_transcript=-25bp_to_ENSMUST00000094810_5end | |||
|description=CAGE_peak_1_at_Scg2_5end | |||
|id=chr1:79436590..79436610,- | |||
|ontology_enrichment_celltype=CL:0000540!2.58e-08!33;CL:0000047!2.58e-08!33;CL:0000031!2.58e-08!33;CL:0000404!2.58e-08!33;CL:0000393!3.36e-08!39;CL:0000211!3.36e-08!39;CL:0000221!9.33e-07!44;CL:0000133!9.33e-07!44;CL:0002319!9.48e-07!43;CL:0000055!9.50e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.47e-08,33;CL:0000047,2.47e-08,33;CL:0000031,2.47e-08,33;CL:0000404,2.47e-08,33;CL:0000393,1.01e-07,39;CL:0000211,1.01e-07,39;CL:0000221,4.21e-07,44;CL:0000133,4.21e-07,44;CL:0002319,4.29e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!3.66e-25!71;UBERON:0003075!3.66e-25!71;UBERON:0007284!3.66e-25!71;UBERON:0004121!5.87e-24!102;UBERON:0000924!5.87e-24!102;UBERON:0006601!5.87e-24!102;UBERON:0000073!1.48e-23!75;UBERON:0001016!1.48e-23!75;UBERON:0001017!1.25e-22!73;UBERON:0005743!1.25e-22!73;UBERON:0000033!3.13e-19!63;UBERON:0001049!3.34e-19!52;UBERON:0005068!3.34e-19!52;UBERON:0006241!3.34e-19!52;UBERON:0007135!3.34e-19!52;UBERON:0000955!5.27e-19!50;UBERON:0006238!5.27e-19!50;UBERON:0002616!2.51e-18!49;UBERON:0003056!2.32e-16!49;UBERON:0003080!1.46e-15!40;UBERON:0002780!6.91e-15!39;UBERON:0001890!6.91e-15!39;UBERON:0006240!6.91e-15!39;UBERON:0002020!1.17e-10!34;UBERON:0007811!7.00e-10!86;UBERON:0002791!8.49e-09!29;UBERON:0003528!8.49e-09!29;UBERON:0001893!8.49e-09!29;UBERON:0001894!7.75e-08!10;UBERON:0006222!7.75e-08!10;UBERON:0000153!1.60e-07!94;UBERON:0000468!4.54e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.96e-25,75;UBERON:0001017,2.03e-24,73;UBERON:0000073,1.27e-21,54;UBERON:0002346,2.75e-21,64;UBERON:0003075,2.75e-21,64;UBERON:0007284,2.75e-21,64;UBERON:0004121,1.99e-20,95;UBERON:0000924,1.99e-20,95;UBERON:0006601,1.99e-20,95;UBERON:0001049,2.92e-20,52;UBERON:0005068,2.92e-20,52;UBERON:0006241,2.92e-20,52;UBERON:0007135,2.92e-20,52;UBERON:0000955,5.17e-18,47;UBERON:0006238,5.17e-18,47;UBERON:0002616,2.70e-17,46;UBERON:0003056,1.48e-16,49;UBERON:0010371,1.95e-16,73;UBERON:0003080,4.44e-16,40;UBERON:0002780,2.38e-15,39;UBERON:0001890,2.38e-15,39;UBERON:0006240,2.38e-15,39;UBERON:0010314,9.38e-15,92;UBERON:0002020,8.24e-11,34;UBERON:0003528,8.41e-09,29;UBERON:0002791,8.41e-09,29;UBERON:0001893,8.41e-09,29;UBERON:0001894,1.90e-08,10;UBERON:0006222,1.90e-08,10;UBERON:0000007,4.10e-07,8;UBERON:0003296,4.10e-07,8;UBERON:0010133,4.10e-07,8;UBERON:0002021,7.53e-07,10;UBERON:0000411,7.53e-07,10;UBERON:0001950,7.53e-07,10 | |||
|phase1_expression=2.24208385946712,0.348975407639361,0,0.30246421130683,0,14.1018588405987,17.5209480446644,0,0,0,0,0,0,0,0,0,0,0,0,0,34.6976623816365,0,0,8.95957567643077,9.63518980482114,0,3.4460959692726,3.66301095566011,8.7410772949932,4.53654233567875,3.76941868114018,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,39.5316008443313,33.3530103712203,1.10128051297009,0,1.09012578190223,3.73466510648602,2.52758868796568,0,0,0,0,0,0.257259436035947,0.573066879877513,2.06268836910977,12.3413041124355,20.1016572123373,8.23980824558033,0,0,0,0,0,1.19840044207362,3.84218305321555,1.24427534770173,0.405017814995072,0.420649922702764,27.4224945027651,33.130281142742,4.77714116938321,3.35459148563827,1.83843757322004,156.364551019132,199.575309427148,288.780282521738,13.7161739239402,24.8846390598554,27.6084086395083,185.377511336917,417.569856643507,363.965426204362,72.7732606119959,92.9687075618142,24.6047268489397,28.397322499944,66.7296875742916,0,0.860423876981386,0,0.539703191637817,0,0,17.555552516469,0,0,0,5.35204995151386,2.56652954828636,0,0,0,0.253359865475099,0,10.7332846935916,0.258937883647172,1676.95084501533,30.706902837606,157.104186809065,186.798552777407,353.143146814795,412.501184632052,455.038727204755,0.247194967734374,1.87979163995885,0,0.323533699894818,0.220841518460394,0,14.9113408974498,69.6818296887482,61.7867785099692,21.2029355823131,0,0,0,390.204615649563,192.150253183823,32.5444771972319,117.852889090363,122.743419518559,315.214463596853,239.143621761875,0.407357455401265,0,0,47.1389757185702,6.24578126220978,0.689706313300419,1.44049703844279,4.52114453507145,9.45707338203457,21.5231050078548,17.7096259417887,111.242449417777,0,1.89106080167819,0,0,0,0,0.411564272815887,0.199034266818493,0,0,0,0,0.938104239924385,0.180062061461015,0.23674473558521,0,0,0,0,0,0,0,0.0810688095458557,0,0,0.134206418760372,94.8407668024214,12.1427442607556,11.8950761874167,16.6603856998033,0.426576501070468,1.39342003116263,3.22168653305233,9.4791256572971,8.00560957841533,17.5007576023554,24.6755112003146,17.2933902460211,23.8768448360256,26.6601672535142,28.4647567193915,23.3693046250098,18.371734239349,19.9141273254367,1.13800740571849,6.39791670614481,0,1.4255592949172,1.93952487167626,1.26244475802573,0.189709611372772,0,0,0.123397163921801,0,0.333690211432188,0.393117990226406,0,0,0,0.25462585178142,0,0,0,0,0,0,0.252578877947112,0.179397413521912,0,0.184753190166605,1.51593129416388,0.325929952884052,0.169745085775188,0,0.502518772325447,0.952174563544055,0.585400943573396,0,0,0.318909537314974,0.163863314715738,0.518054945597687,0,0,0,0,0,299.58740091722,316.119918739172,0,0,6.62567260774139,11.3227235846025,15.2950612390287,19.3564726341567,28.2954316084641,27.7415000173056,18.2164815753702,42.0848435392289,42.6910800182245,354.096090696831,0.425820255624806,0.35613120733451,0.977321756121456,0,103.541207905171,5.09839335925461,9.06970670894253,43.7563785033684,56.6979634331084,70.7100840271033,80.629627468485,85.4304264272138,93.0458157584123,65.7356456506497,49.5467460302494,47.442349894166,2422.2277949382,106.776228760567,173.469994952674,302.643893464608,469.774278918383,375.644729869961,448.231532120178,376.318677105645,0,0,6.3953235435939,0,0,0,0.119372344003136,0.164140899745061,23.6099477670179,239.754915499589,0,1.44470807574256,0.740778109478847,0,0,0,0,0,0,8.59203556213602,0.316335993581135,5.48962561242491,1.72808545314882,3.3454127362315,5.45906409365444,9.17077555416781,14.8776220305605,9.94672579539312,10.8876577565106,1.24267862617385,0.56369293868419,0,0.165458490457098,0,0.258319646955462,0.168956125490778,0.469428954583016,0.13020438484395,0,0,0,1.26404448251271,1.01362607645082,0.924398614483445,0.25984164595559,0.716106782669926,0.198681354781265,0.841368146639782,0,0.403865799792591,0.304827226619999,0,0.0974578807397524,0.192423683280659,0.116876902181569,0.906921534460845,0,0,0,8.30715254338419,0.187682475451182,0,0.214368379079066,0,127.06916458884,112.319357707751,96.2464462578186,80.0835829721584,97.2817178074312,74.0286019441907,96.5282175331482,122.937688480212,154.521561463614,105.623103597371,0.830298780673413,5.58634822761443,4.26834014385335,6.80698807791223,5.8691685535835,6.80220981265052,13.7792971237001,12.7741735488114,14.7622836412235,12.1294661646623,10.1391719956096,12.8265912142532,11.9861129561449,12.6129550237592,11.6594001979895,14.2888107384922,9.50251472747815,10.9958255664312,11.5384052224926,12.6591071315582,17.4863318716562,11.7134032065163,13.1139904471027,12.0637525804833,15.3398290076989,11.4229720653763,13.7195979654579,15.7841826862706,12.765586701511,15.7119836064167,11.0330566855482,11.2295109908142,9.00308294973317,11.4653262477615,7.33045121728337,16.2376875659665,10.292990771598,10.3138105943183,6.88637995447836,4.85301122062934,5.79669589051054 | |||
|short_description=p1@Scg2 | |||
}} |
Revision as of 21:01, 13 September 2013
Short description: | p1@Scg2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Scg2_5end |
Coexpression cluster: | MCL_coexpression_mm9:608 |
Association with transcript: | -25bp_to_ENSMUST00000094810_5end |
EntrezGene: | Scg2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.47e-08 | 33 |
neuronal stem cell | 2.47e-08 | 33 |
neuroblast | 2.47e-08 | 33 |
electrically signaling cell | 2.47e-08 | 33 |
electrically responsive cell | 1.01e-07 | 39 |
electrically active cell | 1.01e-07 | 39 |
ectodermal cell | 4.21e-07 | 44 |
neurectodermal cell | 4.21e-07 | 44 |
neural cell | 4.29e-07 | 43 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.