FFCP PHASE1:Mm9::chr3:131006062..131006141,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=71519|HGNC=|MCL_coexpression_id=73|UniProt=E9QPE9,Q9CX98|association_with_transcript=3bp_to_ENSMUST00000090250,ENSMUST00000106337,NM_027816,uc008rjn.1,uc008rjo.1,uc008rjp.1_5end|description=CAGE_peak_1_at_Cyp2u1_5end|id=chr3:131006062..131006141,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000025!2.58e-12!114;UBERON:0004111!6.61e-12!122;UBERON:0001017!1.74e-11!73;UBERON:0005743!1.74e-11!73;UBERON:0000073!1.75e-10!75;UBERON:0001016!1.75e-10!75;UBERON:0000033!1.01e-09!63;UBERON:0001049!2.64e-09!52;UBERON:0005068!2.64e-09!52;UBERON:0006241!2.64e-09!52;UBERON:0007135!2.64e-09!52;UBERON:0000955!3.60e-09!50;UBERON:0006238!3.60e-09!50;UBERON:0002616!1.01e-08!49;UBERON:0004535!2.21e-08!23;UBERON:0001009!2.21e-08!23;UBERON:0004121!1.10e-07!102;UBERON:0000924!1.10e-07!102;UBERON:0006601!1.10e-07!102;UBERON:0002346!1.15e-07!71;UBERON:0003075!1.15e-07!71;UBERON:0007284!1.15e-07!71;UBERON:0007100!1.40e-07!18;UBERON:0000948!1.40e-07!18;UBERON:0005498!1.40e-07!18;UBERON:0004140!1.40e-07!18;UBERON:0009881!1.40e-07!18;UBERON:0004141!1.40e-07!18;UBERON:0003084!1.40e-07!18;UBERON:0007005!1.40e-07!18;UBERON:0004139!1.40e-07!18;UBERON:0004291!1.40e-07!18;UBERON:0002020!1.61e-07!34|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.50e-13,92;UBERON:0000025,2.14e-12,114;UBERON:0004111,5.53e-12,122;UBERON:0001017,1.95e-11,73;UBERON:0001016,2.06e-10,75;UBERON:0000073,4.98e-10,54;UBERON:0002346,1.91e-09,64;UBERON:0003075,1.91e-09,64;UBERON:0007284,1.91e-09,64;UBERON:0001049,3.00e-09,52;UBERON:0005068,3.00e-09,52;UBERON:0006241,3.00e-09,52;UBERON:0007135,3.00e-09,52;UBERON:0004121,5.65e-09,95;UBERON:0000924,5.65e-09,95;UBERON:0006601,5.65e-09,95;UBERON:0004535,2.12e-08,23;UBERON:0001009,2.12e-08,23;UBERON:0000955,6.79e-08,47;UBERON:0006238,6.79e-08,47;UBERON:0007100,1.35e-07,18;UBERON:0000948,1.35e-07,18;UBERON:0005498,1.35e-07,18;UBERON:0004140,1.35e-07,18;UBERON:0009881,1.35e-07,18;UBERON:0004141,1.35e-07,18;UBERON:0003084,1.35e-07,18;UBERON:0007005,1.35e-07,18;UBERON:0004139,1.35e-07,18;UBERON:0004291,1.35e-07,18;UBERON:0002020,1.55e-07,34;UBERON:0002616,1.82e-07,46;UBERON:0000160,4.16e-07,31;UBERON:0010371,4.62e-07,73|phase1_expression=5.44506080156299,16.40184415905,22.2949627300873,101.930439210402,138.748117195138,11.7515490338323,11.9142446703718,1.80772652818207,0.985521055061667,0,0,0,0.684802919724823,0.437102012094987,0,0,0,0.315462165358238,0.411343300817216,1.27316895539409,10.3752813984305,0,0,15.359272588167,25.2350209173887,18.9496548157957,14.2151458732495,11.635446565038,98.0520844394889,97.0315999575733,15.5211357458713,0,0,0,3.75507105676657,4.82080471539628,3.47087905646027,0,0.7813353445238,0,0,0,0.485510353031154,19.0104195143122,13.6858857146345,12.4811791469943,9.38869613217647,10.247182349881,23.726107735323,22.7482981916912,11.198913730029,17.2503077237966,0.671130424230945,0.725362142011344,0.336093799142464,14.1492689819771,13.4670716771216,21.1425557833751,8.29497489524351,6.87688273053643,9.50747105259269,3.72728985276045,7.11435836888911,5.39939830368839,7.9109309005358,5.6838409195688,18.8748069626595,15.7529505181837,5.80661828927475,5.26523159493594,4.41682418837902,18.2816630018434,22.9703282589678,6.98197555525238,5.75072826109418,6.43453150627015,29.731287869835,21.7068474744819,23.5017995882053,8.70449499019279,8.5083508550241,6.77187381723788,21.7762739221077,20.2594539611405,22.1557459276375,16.7938293719991,13.6676813567139,12.1159639786445,0.605809546665472,2.11600368298999,4.34796733052517,60.229671388697,44.1981366910038,285.502988376405,134.503718411668,75.2685170323524,28.9315505471409,2.21559419351475,2.07828803682295,3.88673531961374,3.52108549441701,2.56652954828636,2.54805239706646,7.11066703153331,1.73192832808971,1.01343946190039,0.505524445014783,18.0410529956115,1.03575153458869,8.60964406575984,1.56136794089522,1.82679286987285,0.691846491768175,1.20578112442098,1.88141931417128,14.5773245942424,1.73036477414062,58.2735408387244,4.42305275974937,3.72063754879041,4.85851340612866,3.87900202508178,3.72783522436244,25.4719293400046,23.2485844562935,43.4276993854605,0.479260498023681,1.19980546198682,0.635351135365324,25.0150367806054,20.5875271268382,14.3245961408665,16.8609590586508,24.5486839037117,23.2722609906707,21.0913641988085,1.83310854930569,4.97627882440372,4.0435641349388,12.8369532090749,6.11566081924707,8.5063778640385,8.46292010085141,6.63101198477146,9.72921937863988,7.55870949680614,7.68354141389776,13.9699820199068,1.5089759505299,2.08016688184601,2.63926686245923,2.6303487891309,0.834141747676794,1.0447564995665,1.64625709126355,1.19420560091096,1.40442637462647,1.28673953557358,0.568326998791185,9.52778553663309,10.3191466391682,10.2635375032778,15.3884078130387,15.1508458445501,17.8949850949359,26.2763357567961,28.7052539497593,17.8650973821769,28.4688540350321,26.5951291808134,39.31837262974,45.0295961270024,40.836321444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| ||
|EntrezGene=71519 | |||
|HGNC= | |||
|MCL_coexpression_id=73 | |||
|UniProt=E9QPE9,Q9CX98 | |||
|association_with_transcript=3bp_to_ENSMUST00000090250,ENSMUST00000106337,NM_027816,uc008rjn.1,uc008rjo.1,uc008rjp.1_5end | |||
|description=CAGE_peak_1_at_Cyp2u1_5end | |||
|id=chr3:131006062..131006141,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000025!2.58e-12!114;UBERON:0004111!6.61e-12!122;UBERON:0001017!1.74e-11!73;UBERON:0005743!1.74e-11!73;UBERON:0000073!1.75e-10!75;UBERON:0001016!1.75e-10!75;UBERON:0000033!1.01e-09!63;UBERON:0001049!2.64e-09!52;UBERON:0005068!2.64e-09!52;UBERON:0006241!2.64e-09!52;UBERON:0007135!2.64e-09!52;UBERON:0000955!3.60e-09!50;UBERON:0006238!3.60e-09!50;UBERON:0002616!1.01e-08!49;UBERON:0004535!2.21e-08!23;UBERON:0001009!2.21e-08!23;UBERON:0004121!1.10e-07!102;UBERON:0000924!1.10e-07!102;UBERON:0006601!1.10e-07!102;UBERON:0002346!1.15e-07!71;UBERON:0003075!1.15e-07!71;UBERON:0007284!1.15e-07!71;UBERON:0007100!1.40e-07!18;UBERON:0000948!1.40e-07!18;UBERON:0005498!1.40e-07!18;UBERON:0004140!1.40e-07!18;UBERON:0009881!1.40e-07!18;UBERON:0004141!1.40e-07!18;UBERON:0003084!1.40e-07!18;UBERON:0007005!1.40e-07!18;UBERON:0004139!1.40e-07!18;UBERON:0004291!1.40e-07!18;UBERON:0002020!1.61e-07!34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.50e-13,92;UBERON:0000025,2.14e-12,114;UBERON:0004111,5.53e-12,122;UBERON:0001017,1.95e-11,73;UBERON:0001016,2.06e-10,75;UBERON:0000073,4.98e-10,54;UBERON:0002346,1.91e-09,64;UBERON:0003075,1.91e-09,64;UBERON:0007284,1.91e-09,64;UBERON:0001049,3.00e-09,52;UBERON:0005068,3.00e-09,52;UBERON:0006241,3.00e-09,52;UBERON:0007135,3.00e-09,52;UBERON:0004121,5.65e-09,95;UBERON:0000924,5.65e-09,95;UBERON:0006601,5.65e-09,95;UBERON:0004535,2.12e-08,23;UBERON:0001009,2.12e-08,23;UBERON:0000955,6.79e-08,47;UBERON:0006238,6.79e-08,47;UBERON:0007100,1.35e-07,18;UBERON:0000948,1.35e-07,18;UBERON:0005498,1.35e-07,18;UBERON:0004140,1.35e-07,18;UBERON:0009881,1.35e-07,18;UBERON:0004141,1.35e-07,18;UBERON:0003084,1.35e-07,18;UBERON:0007005,1.35e-07,18;UBERON:0004139,1.35e-07,18;UBERON:0004291,1.35e-07,18;UBERON:0002020,1.55e-07,34;UBERON:0002616,1.82e-07,46;UBERON:0000160,4.16e-07,31;UBERON:0010371,4.62e-07,73 | |||
|phase1_expression=5.44506080156299,16.40184415905,22.2949627300873,101.930439210402,138.748117195138,11.7515490338323,11.9142446703718,1.80772652818207,0.985521055061667,0,0,0,0.684802919724823,0.437102012094987,0,0,0,0.315462165358238,0.411343300817216,1.27316895539409,10.3752813984305,0,0,15.359272588167,25.2350209173887,18.9496548157957,14.2151458732495,11.635446565038,98.0520844394889,97.0315999575733,15.5211357458713,0,0,0,3.75507105676657,4.82080471539628,3.47087905646027,0,0.7813353445238,0,0,0,0.485510353031154,19.0104195143122,13.6858857146345,12.4811791469943,9.38869613217647,10.247182349881,23.726107735323,22.7482981916912,11.198913730029,17.2503077237966,0.671130424230945,0.725362142011344,0.336093799142464,14.1492689819771,13.4670716771216,21.1425557833751,8.29497489524351,6.87688273053643,9.50747105259269,3.72728985276045,7.11435836888911,5.39939830368839,7.9109309005358,5.6838409195688,18.8748069626595,15.7529505181837,5.80661828927475,5.26523159493594,4.41682418837902,18.2816630018434,22.9703282589678,6.98197555525238,5.75072826109418,6.43453150627015,29.731287869835,21.7068474744819,23.5017995882053,8.70449499019279,8.5083508550241,6.77187381723788,21.7762739221077,20.2594539611405,22.1557459276375,16.7938293719991,13.6676813567139,12.1159639786445,0.605809546665472,2.11600368298999,4.34796733052517,60.229671388697,44.1981366910038,285.502988376405,134.503718411668,75.2685170323524,28.9315505471409,2.21559419351475,2.07828803682295,3.88673531961374,3.52108549441701,2.56652954828636,2.54805239706646,7.11066703153331,1.73192832808971,1.01343946190039,0.505524445014783,18.0410529956115,1.03575153458869,8.60964406575984,1.56136794089522,1.82679286987285,0.691846491768175,1.20578112442098,1.88141931417128,14.5773245942424,1.73036477414062,58.2735408387244,4.42305275974937,3.72063754879041,4.85851340612866,3.87900202508178,3.72783522436244,25.4719293400046,23.2485844562935,43.4276993854605,0.479260498023681,1.19980546198682,0.635351135365324,25.0150367806054,20.5875271268382,14.3245961408665,16.8609590586508,24.5486839037117,23.2722609906707,21.0913641988085,1.83310854930569,4.97627882440372,4.0435641349388,12.8369532090749,6.11566081924707,8.5063778640385,8.46292010085141,6.63101198477146,9.72921937863988,7.55870949680614,7.68354141389776,13.9699820199068,1.5089759505299,2.08016688184601,2.63926686245923,2.6303487891309,0.834141747676794,1.0447564995665,1.64625709126355,1.19420560091096,1.40442637462647,1.28673953557358,0.568326998791185,9.52778553663309,10.3191466391682,10.2635375032778,15.3884078130387,15.1508458445501,17.8949850949359,26.2763357567961,28.7052539497593,17.8650973821769,28.4688540350321,26.5951291808134,39.31837262974,45.0295961270024,40.8363214441354,39.0540678592682,19.767255165028,9.67303356365274,5.28670052774077,9.52022039988759,0.639864751605702,1.85789337488351,4.51036114627327,18.1515172161008,22.6825604721768,36.9037714658365,38.91138304665,34.5867804920423,26.138861715228,22.8799942847323,22.4208700186988,38.6492345721315,22.6944952368429,17.5244320463843,1.89667900953082,2.17072173958485,4.50830942692322,6.10953983535943,4.46090720485539,7.29412526859313,12.2046516649817,21.5510816050219,19.3108435244891,20.6073263749407,15.4155366085317,1.00107063429656,0.196558995113203,0.449724224769707,0.202860121388503,0,1.2731292589071,2.5892652370573,4.05338066937588,9.33508804839477,8.62609239164127,7.07067800570156,8.11297950097858,11.6186283855671,58.4835568081434,55.4810049567872,4.0645701836653,1.70542270593436,1.62964976442026,3.56464680127895,2.11221223459652,2.51259386162724,2.14239276797412,2.14647012643579,5.51723004371669,6.2010113101657,4.62418829106713,6.06294264448231,4.48980952851328,4.91806799177139,0,0.54390568381871,4.91764273019036,3.86311444826625,30.9862638676438,22.8562788854796,3.77050374366353,16.6630811954886,5.36363973007636,8.98009111882268,4.30846795465598,7.64700153448166,6.23836287430704,4.81230102341015,8.09621403349789,8.76767573733936,6.32460444714438,26.9909905794318,6.81312408999689,1.42452482933804,2.28041743095006,2.14461159864296,3.98235415019888,1.69946445308487,0.906970670894253,1.50884063804718,2.65771703592696,2.45948118355142,5.42699415653264,1.81766864738753,3.92147116223193,9.16506598013866,7.37930260024991,4.12542172992747,21.1072555567349,2.52085531643834,0.905510786479282,1.71469628025274,4.25616560741457,4.8159580752559,5.92376474167636,7.61162372786498,0.938686832254841,7.41412248023371,3.74898276693435,4.122156323537,1.13025098687134,2.41251699712623,2.38744688006273,0.820704498725306,26.2332752966866,31.5223013417866,2.22132145037209,1.857481811669,1.66675074632741,2.63715839806567,2.1871076435364,2.74533807847827,1.35982743995084,1.53946597556024,0.967399816630967,8.59203556213602,1.89801596148681,1.42323626988794,2.26811215725783,2.29997125615916,4.80397640241591,3.64133735239016,4.79390043206948,12.0407733312654,2.33306951925227,13.6694648879124,12.4012446510522,1.49516546043979,1.65458490457098,1.55560950675238,2.4540366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| |||
|short_description=p1@Cyp2u1 | |||
}} |
Revision as of 01:33, 14 September 2013
Short description: | p1@Cyp2u1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Cyp2u1_5end |
Coexpression cluster: | MCL_coexpression_mm9:73 |
Association with transcript: | 3bp_to_ENSMUST00000090250, ENSMUST00000106337, NM_027816, uc008rjn.1, uc008rjo.1, uc008rjp.1_5end |
EntrezGene: | Cyp2u1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 1.50e-13 | 92 |
tube | 2.14e-12 | 114 |
anatomical conduit | 5.53e-12 | 122 |
central nervous system | 1.95e-11 | 73 |
nervous system | 2.06e-10 | 75 |
regional part of nervous system | 4.98e-10 | 54 |
neurectoderm | 1.91e-09 | 64 |
neural plate | 1.91e-09 | 64 |
presumptive neural plate | 1.91e-09 | 64 |
neural tube | 3.00e-09 | 52 |
neural rod | 3.00e-09 | 52 |
future spinal cord | 3.00e-09 | 52 |
neural keel | 3.00e-09 | 52 |
ectoderm-derived structure | 5.65e-09 | 95 |
ectoderm | 5.65e-09 | 95 |
presumptive ectoderm | 5.65e-09 | 95 |
cardiovascular system | 2.12e-08 | 23 |
circulatory system | 2.12e-08 | 23 |
brain | 6.79e-08 | 47 |
future brain | 6.79e-08 | 47 |
primary circulatory organ | 1.35e-07 | 18 |
heart | 1.35e-07 | 18 |
primitive heart tube | 1.35e-07 | 18 |
primary heart field | 1.35e-07 | 18 |
anterior lateral plate mesoderm | 1.35e-07 | 18 |
heart tube | 1.35e-07 | 18 |
heart primordium | 1.35e-07 | 18 |
cardiac mesoderm | 1.35e-07 | 18 |
cardiogenic plate | 1.35e-07 | 18 |
heart rudiment | 1.35e-07 | 18 |
gray matter | 1.55e-07 | 34 |
regional part of brain | 1.82e-07 | 46 |
intestine | 4.16e-07 | 31 |
ecto-epithelium | 4.62e-07 | 73 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.