FFCP PHASE1:Hg19::chr8:72756667..72756736,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9242|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7321|TSSclassifier=S|UniProt=O60682|association_with_transcript=0bp_to_ENST00000325509,NM_005098,uc003xyx.1_5end|coexpression_cluster_id=C3796|description=CAGE_peak_2_at_MSC_5end|id=chr8:72756667..72756736,-|ontology_enrichment_celltype=CL:0000055!2.09e-30!180;CL:0000048!1.64e-19!430;CL:0000723!3.40e-19!436;CL:0000034!9.88e-19!444;CL:0000057!1.73e-14!75;CL:0000219!6.72e-14!390;CL:0000680!7.80e-12!57;CL:0000056!7.80e-12!57;CL:0000355!7.80e-12!57;CL:0000144!1.01e-11!625;CL:0002371!2.51e-11!591;CL:0000187!2.55e-11!54;CL:0000183!9.65e-11!59;CL:0000393!3.04e-10!60;CL:0000211!3.04e-10!60;CL:0000134!4.08e-10!358;CL:0002320!1.71e-09!365;CL:0000192!5.06e-09!42;CL:0000514!5.06e-09!42;CL:0002494!9.75e-08!16;CL:0000359!3.13e-07!32;CL:0000333!3.63e-07!41;CL:0000136!7.67e-07!15|ontology_enrichment_celltype_v019=CL:0002494;1.09e-08;16!CL:0002334;9.08e-07;12|ontology_enrichment_celltype_v019_2=CL:0000723,2.87e-21,433;CL:0000048,3.24e-21,427;CL:0000034,7.65e-20,441;CL:0000219,1.66e-14,386;CL:0000057,3.61e-13,76;CL:0000680,7.04e-12,58;CL:0000056,7.04e-12,58;CL:0000355,7.04e-12,58;CL:0000134,1.77e-11,354;CL:0000187,2.80e-11,55;CL:0002320,1.03e-10,361;CL:0000393,4.13e-10,61;CL:0000211,4.13e-10,61;CL:0002494,8.23e-09,16;CL:0000192,1.76e-08,43;CL:0000514,1.76e-08,43;CL:0000136,4.26e-07,15;CL:0002334,7.56e-07,12|ontology_enrichment_development_v019=CL:0000355;8.12e-07;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004290!5.38e-12!70;UBERON:0000914!8.04e-12!83;UBERON:0002329!8.04e-12!83;UBERON:0003077!8.04e-12!83;UBERON:0003059!8.04e-12!83;UBERON:0007282!8.04e-12!83;UBERON:0009618!8.04e-12!83;UBERON:0007285!8.04e-12!83;UBERON:0001134!5.10e-11!61;UBERON:0002036!5.10e-11!61;UBERON:0003082!5.10e-11!61;UBERON:0002385!9.60e-11!63;UBERON:0001015!9.60e-11!63;UBERON:0000383!9.60e-11!63;UBERON:0002384!2.40e-10!375;UBERON:0000486!3.37e-09!82;UBERON:0000948!4.25e-09!24;UBERON:0005498!4.25e-09!24;UBERON:0004140!4.25e-09!24;UBERON:0009881!4.25e-09!24;UBERON:0004141!4.25e-09!24;UBERON:0003084!4.25e-09!24;UBERON:0007005!4.25e-09!24;UBERON:0004139!4.25e-09!24;UBERON:0004291!4.25e-09!24;UBERON:0007100!3.79e-08!27;UBERON:0002204!1.93e-07!167;UBERON:0004872!7.71e-07!84|ontology_enrichment_uberon_v019=UBERON:0000948;9.75e-09;22!UBERON:0007100;2.11e-07;25!UBERON:0001013;3.73e-07;14|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.14e-11,371;UBERON:0001134,5.20e-11,62;UBERON:0002036,5.20e-11,62;UBERON:0003082,5.20e-11,62;UBERON:0002329,8.68e-11,71;UBERON:0003059,8.68e-11,71;UBERON:0007282,8.68e-11,71;UBERON:0004290,8.68e-11,71;UBERON:0009618,8.68e-11,71;UBERON:0007524,1.50e-10,73;UBERON:0003077,2.13e-10,72;UBERON:0007285,2.13e-10,72;UBERON:0002385,3.66e-10,64;UBERON:0001015,3.66e-10,64;UBERON:0000383,3.66e-10,64;UBERON:0000948,6.99e-10,24;UBERON:0005498,6.99e-10,24;UBERON:0004140,6.99e-10,24;UBERON:0009881,6.99e-10,24;UBERON:0004141,6.99e-10,24;UBERON:0003084,6.99e-10,24;UBERON:0007005,6.99e-10,24;UBERON:0004139,6.99e-10,24;UBERON:0004291,6.99e-10,24;UBERON:0000926,6.95e-09,315;UBERON:0004120,6.95e-09,315;UBERON:0006603,6.95e-09,315;UBERON:0007100,1.85e-08,27;UBERON:0007503,2.51e-08,78;UBERON:0000486,2.76e-08,83;UBERON:0004872,2.96e-08,83;UBERON:0001013,2.58e-07,14|phase1_expression=8.17552706717505,8.56402095563933,12.1220787522535,5.00366491765652,21.4541325325098,10.4680622892044,7.59899634504932,2.52687949370732,4.70134130759709,12.2866968250754,0,0,0.527533956456907,0.247532705920093,0,5.3786011716142,2.41077811209591,0.730310090387373,0.975865597581014,0.738726348460727,0.204000691244253,2.82109249330279,1.43117993565528,0.547497700291537,2.76193807108566,22.2363010726538,27.7499992340817,24.9513176764363,0,1.15148819429164,0,0,0,0,0,0,0,1.10799081706375,0.200544447470142,0.434021741431704,0,0,0.257575567634187,0.145398238779565,1.13362783106643,0,4.41615170120801,9.04569353648017,6.50383378879718,1.7261543539329,1.5369642391746,3.07426898855161,0.689491361473237,1.93645405075148,0,0.941211697713023,5.18521685109907,6.74170453335254,2.75475503133812,2.88836124368484,3.19668562899521,0,0.199463657621632,0.852449501065388,18.2831820336008,19.8584828641899,14.3249117268982,2.26123798731069,0.521482918420201,1.3031330682307,14.5295880632009,9.57521853567668,7.27863491114034,0,0,0,0,0,0,0,0,0,0,1.09227722252426,1.77901850772711,0.426730222566507,0,0.574752439954483,0.661044872784862,0,0,0,0,0,0.560508562981536,0,0.393419540227666,0.393010762749165,0.411202997999018,0,0,0,0,0,0,0.221533894583621,0.270803863765016,0.896639238079726,0,0,0,0,0,0,0,0,0.383220493601921,0,0.253019692019503,0.637130828648193,0,0.950452044448374,0.301150238155546,0.127986611154418,1.24930726552346,1.18388626022008,0.821127996921047,0.201606743224732,0.267440195783507,0.289648807765598,19.5045493051169,5.36560687762909,5.37022759742827,2.53007406669196,3.50936537445123,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9242 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7321 | |||
|TSSclassifier=S | |||
|UniProt=O60682 | |||
|association_with_transcript=0bp_to_ENST00000325509,NM_005098,uc003xyx.1_5end | |||
|coexpression_cluster_id=C3796 | |||
|description=CAGE_peak_2_at_MSC_5end | |||
|id=chr8:72756667..72756736,- | |||
|ontology_enrichment_celltype=CL:0000055!2.09e-30!180;CL:0000048!1.64e-19!430;CL:0000723!3.40e-19!436;CL:0000034!9.88e-19!444;CL:0000057!1.73e-14!75;CL:0000219!6.72e-14!390;CL:0000680!7.80e-12!57;CL:0000056!7.80e-12!57;CL:0000355!7.80e-12!57;CL:0000144!1.01e-11!625;CL:0002371!2.51e-11!591;CL:0000187!2.55e-11!54;CL:0000183!9.65e-11!59;CL:0000393!3.04e-10!60;CL:0000211!3.04e-10!60;CL:0000134!4.08e-10!358;CL:0002320!1.71e-09!365;CL:0000192!5.06e-09!42;CL:0000514!5.06e-09!42;CL:0002494!9.75e-08!16;CL:0000359!3.13e-07!32;CL:0000333!3.63e-07!41;CL:0000136!7.67e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0002494;1.09e-08;16!CL:0002334;9.08e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000723,2.87e-21,433;CL:0000048,3.24e-21,427;CL:0000034,7.65e-20,441;CL:0000219,1.66e-14,386;CL:0000057,3.61e-13,76;CL:0000680,7.04e-12,58;CL:0000056,7.04e-12,58;CL:0000355,7.04e-12,58;CL:0000134,1.77e-11,354;CL:0000187,2.80e-11,55;CL:0002320,1.03e-10,361;CL:0000393,4.13e-10,61;CL:0000211,4.13e-10,61;CL:0002494,8.23e-09,16;CL:0000192,1.76e-08,43;CL:0000514,1.76e-08,43;CL:0000136,4.26e-07,15;CL:0002334,7.56e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000355;8.12e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!5.38e-12!70;UBERON:0000914!8.04e-12!83;UBERON:0002329!8.04e-12!83;UBERON:0003077!8.04e-12!83;UBERON:0003059!8.04e-12!83;UBERON:0007282!8.04e-12!83;UBERON:0009618!8.04e-12!83;UBERON:0007285!8.04e-12!83;UBERON:0001134!5.10e-11!61;UBERON:0002036!5.10e-11!61;UBERON:0003082!5.10e-11!61;UBERON:0002385!9.60e-11!63;UBERON:0001015!9.60e-11!63;UBERON:0000383!9.60e-11!63;UBERON:0002384!2.40e-10!375;UBERON:0000486!3.37e-09!82;UBERON:0000948!4.25e-09!24;UBERON:0005498!4.25e-09!24;UBERON:0004140!4.25e-09!24;UBERON:0009881!4.25e-09!24;UBERON:0004141!4.25e-09!24;UBERON:0003084!4.25e-09!24;UBERON:0007005!4.25e-09!24;UBERON:0004139!4.25e-09!24;UBERON:0004291!4.25e-09!24;UBERON:0007100!3.79e-08!27;UBERON:0002204!1.93e-07!167;UBERON:0004872!7.71e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0000948;9.75e-09;22!UBERON:0007100;2.11e-07;25!UBERON:0001013;3.73e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.14e-11,371;UBERON:0001134,5.20e-11,62;UBERON:0002036,5.20e-11,62;UBERON:0003082,5.20e-11,62;UBERON:0002329,8.68e-11,71;UBERON:0003059,8.68e-11,71;UBERON:0007282,8.68e-11,71;UBERON:0004290,8.68e-11,71;UBERON:0009618,8.68e-11,71;UBERON:0007524,1.50e-10,73;UBERON:0003077,2.13e-10,72;UBERON:0007285,2.13e-10,72;UBERON:0002385,3.66e-10,64;UBERON:0001015,3.66e-10,64;UBERON:0000383,3.66e-10,64;UBERON:0000948,6.99e-10,24;UBERON:0005498,6.99e-10,24;UBERON:0004140,6.99e-10,24;UBERON:0009881,6.99e-10,24;UBERON:0004141,6.99e-10,24;UBERON:0003084,6.99e-10,24;UBERON:0007005,6.99e-10,24;UBERON:0004139,6.99e-10,24;UBERON:0004291,6.99e-10,24;UBERON:0000926,6.95e-09,315;UBERON:0004120,6.95e-09,315;UBERON:0006603,6.95e-09,315;UBERON:0007100,1.85e-08,27;UBERON:0007503,2.51e-08,78;UBERON:0000486,2.76e-08,83;UBERON:0004872,2.96e-08,83;UBERON:0001013,2.58e-07,14 | |||
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| |||
|short_description=p2@MSC | |||
}} |
Revision as of 06:00, 14 September 2013
Short description: | p2@MSC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_MSC_5end |
Coexpression cluster: | C3796_neuroectodermal_neuroblastoma_rhabdomyosarcoma_cholangiocellular_hereditary_glioma_mesenchymal |
Association with transcript: | 0bp_to_ENST00000325509, NM_005098, uc003xyx.1_5end |
EntrezGene: | MSC |
HGNC: | 7321 |
UniProt: | O60682 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
somatic stem cell | 2.87e-21 | 433 |
multi fate stem cell | 3.24e-21 | 427 |
stem cell | 7.65e-20 | 441 |
motile cell | 1.66e-14 | 386 |
fibroblast | 3.61e-13 | 76 |
muscle precursor cell | 7.04e-12 | 58 |
myoblast | 7.04e-12 | 58 |
multi-potent skeletal muscle stem cell | 7.04e-12 | 58 |
mesenchymal cell | 1.77e-11 | 354 |
muscle cell | 2.80e-11 | 55 |
connective tissue cell | 1.03e-10 | 361 |
electrically responsive cell | 4.13e-10 | 61 |
electrically active cell | 4.13e-10 | 61 |
cardiocyte | 8.23e-09 | 16 |
smooth muscle cell | 1.76e-08 | 43 |
smooth muscle myoblast | 1.76e-08 | 43 |
fat cell | 4.26e-07 | 15 |
preadipocyte | 7.56e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.14e-11 | 371 |
skeletal muscle tissue | 5.20e-11 | 62 |
striated muscle tissue | 5.20e-11 | 62 |
myotome | 5.20e-11 | 62 |
somite | 8.68e-11 | 71 |
presomitic mesoderm | 8.68e-11 | 71 |
presumptive segmental plate | 8.68e-11 | 71 |
dermomyotome | 8.68e-11 | 71 |
trunk paraxial mesoderm | 8.68e-11 | 71 |
dense mesenchyme tissue | 1.50e-10 | 73 |
paraxial mesoderm | 2.13e-10 | 72 |
presumptive paraxial mesoderm | 2.13e-10 | 72 |
muscle tissue | 3.66e-10 | 64 |
musculature | 3.66e-10 | 64 |
musculature of body | 3.66e-10 | 64 |
heart | 6.99e-10 | 24 |
primitive heart tube | 6.99e-10 | 24 |
primary heart field | 6.99e-10 | 24 |
anterior lateral plate mesoderm | 6.99e-10 | 24 |
heart tube | 6.99e-10 | 24 |
heart primordium | 6.99e-10 | 24 |
cardiac mesoderm | 6.99e-10 | 24 |
cardiogenic plate | 6.99e-10 | 24 |
heart rudiment | 6.99e-10 | 24 |
mesoderm | 6.95e-09 | 315 |
mesoderm-derived structure | 6.95e-09 | 315 |
presumptive mesoderm | 6.95e-09 | 315 |
primary circulatory organ | 1.85e-08 | 27 |
epithelial vesicle | 2.51e-08 | 78 |
multilaminar epithelium | 2.76e-08 | 83 |
splanchnic layer of lateral plate mesoderm | 2.96e-08 | 83 |
adipose tissue | 2.58e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.