FFCP PHASE1:Mm9::chr5:34916343..34916386,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=11518|HGNC=|MCL_coexpression_id=1|UniProt=Q9QYC0,F8WGR0|association_with_transcript=0bp_to_NM_001024458,NM_001102444,NM_013457,uc008xcp.1,uc008xcq.1,uc008xcr.1_5end|description=CAGE_peak_3_at_Add1_5end|id=chr5:34916343..34916386,+|ontology_enrichment_celltype=CL:0000117!5.99e-12!23;CL:0000337!5.99e-12!23|ontology_enrichment_celltype_v019_2=CL:0000117,5.99e-12,23;CL:0000337,5.99e-12,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000955!3.25e-20!50;UBERON:0006238!3.25e-20!50;UBERON:0001049!4.74e-20!52;UBERON:0005068!4.74e-20!52;UBERON:0006241!4.74e-20!52;UBERON:0007135!4.74e-20!52;UBERON:0002616!9.97e-20!49;UBERON:0002020!3.27e-18!34;UBERON:0002791!1.06e-16!29;UBERON:0003528!1.06e-16!29;UBERON:0001893!1.06e-16!29;UBERON:0000033!4.92e-16!63;UBERON:0003080!7.83e-16!40;UBERON:0002780!2.49e-15!39;UBERON:0001890!2.49e-15!39;UBERON:0006240!2.49e-15!39;UBERON:0001017!2.13e-14!73;UBERON:0005743!2.13e-14!73;UBERON:0000073!3.05e-13!75;UBERON:0001016!3.05e-13!75;UBERON:0003056!4.20e-13!49;UBERON:0000956!7.28e-13!21;UBERON:0001869!7.28e-13!21;UBERON:0000203!7.28e-13!21;UBERON:0002346!6.36e-11!71;UBERON:0003075!6.36e-11!71;UBERON:0007284!6.36e-11!71;UBERON:0002619!1.04e-10!17;UBERON:0004121!3.95e-08!102;UBERON:0000924!3.95e-08!102;UBERON:0006601!3.95e-08!102;UBERON:0002021!1.10e-07!10;UBERON:0000411!1.10e-07!10;UBERON:0001950!1.10e-07!10;UBERON:0000064!4.76e-07!99;UBERON:0007811!8.14e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.66e-21,54;UBERON:0001049,4.74e-20,52;UBERON:0005068,4.74e-20,52;UBERON:0006241,4.74e-20,52;UBERON:0007135,4.74e-20,52;UBERON:0000955,2.44e-18,47;UBERON:0006238,2.44e-18,47;UBERON:0002020,3.27e-18,34;UBERON:0002616,7.29e-18,46;UBERON:0003528,1.06e-16,29;UBERON:0002791,1.06e-16,29;UBERON:0001893,1.06e-16,29;UBERON:0003080,7.82e-16,40;UBERON:0002780,2.49e-15,39;UBERON:0001890,2.49e-15,39;UBERON:0006240,2.49e-15,39;UBERON:0002346,1.60e-14,64;UBERON:0003075,1.60e-14,64;UBERON:0007284,1.60e-14,64;UBERON:0001017,2.25e-14,73;UBERON:0001016,3.20e-13,75;UBERON:0003056,4.20e-13,49;UBERON:0000956,7.28e-13,21;UBERON:0001869,7.28e-13,21;UBERON:0000203,7.28e-13,21;UBERON:0010371,6.10e-12,73;UBERON:0002619,1.04e-10,17;UBERON:0004121,1.93e-10,95;UBERON:0000924,1.93e-10,95;UBERON:0006601,1.93e-10,95;UBERON:0011216,9.55e-08,194;UBERON:0002021,1.10e-07,10;UBERON:0000411,1.10e-07,10;UBERON:0001950,1.10e-07,10|phase1_expression=6.88640042550614,16.40184415905,15.0149748998547,24.4996011158532,26.0465779572101,11.2479112180966,10.7461814673942,4.39019299701359,0.140788722151667,0.468129052643987,0.856089841127525,0.239316476986009,5.30722262786738,3.2345548895029,15.6561588053361,18.627724599864,16.7894850750755,4.10100814965709,2.4680598049033,2.12194825899015,8.07911256435163,2.18440092641948,2.61199789138935,9.43955294481099,7.79991555628378,16.0784949952206,16.7997178502039,14.8675150553263,15.771943814879,23.1867719379136,7.53883736228036,0.635030673459631,0.61506478758457,0,5.19932915552294,4.98703936075477,6.32925004413344,19.2524550138978,9.37602413428561,21.9879972468995,21.7645650571475,19.8083190637949,20.3914348273085,4.15459499319405,4.05507724878058,4.58866880404204,10.1710874765245,12.6454590700659,10.9843091367236,14.9711022287198,16.7983705950435,7.18762821824858,3.35565212115473,5.80289713609076,4.03312558970957,3.60163210450326,6.01720223871389,9.28209766099396,33.179899580974,24.8625760257855,32.9592329823213,11.8595586224196,16.8966011261116,9.89889689009539,11.8663963508037,8.5257613793532,5.99200221036809,8.83702102239575,18.664130215526,26.5961698513431,24.6080204781117,14.8538511889978,12.589506834242,24.4981598429908,27.986877537325,36.7687514644008,31.9336054898227,29.3680877595932,27.9563890526363,32.9715719325485,35.1312551433253,27.6084086395083,17.588528937087,11.8180148106653,18.0301932376636,18.2669722993674,18.5083185038834,18.4535451367048,3.10477392666055,5.44115232768856,7.53647670624362,6.0229671388697,2.03991400112325,2.69851595818909,3.89865850468601,1.79210754838934,7.5839986871146,7.32850387085648,6.23486411046885,6.71345191569646,4.92951969218382,16.6824420638613,30.5766287647975,7.11066703153331,5.41227602528035,2.28023878927589,4.54972000513305,6.50848114398642,5.69663344023778,5.49235914539852,6.07198643681475,5.1759131313064,6.22661842591358,3.3158980921577,3.99801604261396,4.02133092254962,11.8653584512499,5.63937491987655,18.5768215909474,5.66183974815932,10.3795513676385,15.5160081003271,9.31958806090611,23.7152445579353,19.4785437336513,17.1156226989756,1.7972268675888,3.59941638596045,1.77898317902291,22.7681771895331,36.1425476226715,25.6334878310243,41.8916611663386,36.5673103982373,22.8566849015516,29.3656686152641,6.82323737797119,7.2156042953854,12.1306924048164,10.3116509384372,5.98554037628437,4.82794419310293,7.02242306240862,8.59017461663576,7.34794190834341,8.19927809823039,8.62055865949505,9.57202471734358,8.40715172438085,5.8622884852024,7.38994721488585,5.2606975782618,8.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| ||
|EntrezGene=11518 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q9QYC0,F8WGR0 | |||
|association_with_transcript=0bp_to_NM_001024458,NM_001102444,NM_013457,uc008xcp.1,uc008xcq.1,uc008xcr.1_5end | |||
|description=CAGE_peak_3_at_Add1_5end | |||
|id=chr5:34916343..34916386,+ | |||
|ontology_enrichment_celltype=CL:0000117!5.99e-12!23;CL:0000337!5.99e-12!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.99e-12,23;CL:0000337,5.99e-12,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000955!3.25e-20!50;UBERON:0006238!3.25e-20!50;UBERON:0001049!4.74e-20!52;UBERON:0005068!4.74e-20!52;UBERON:0006241!4.74e-20!52;UBERON:0007135!4.74e-20!52;UBERON:0002616!9.97e-20!49;UBERON:0002020!3.27e-18!34;UBERON:0002791!1.06e-16!29;UBERON:0003528!1.06e-16!29;UBERON:0001893!1.06e-16!29;UBERON:0000033!4.92e-16!63;UBERON:0003080!7.83e-16!40;UBERON:0002780!2.49e-15!39;UBERON:0001890!2.49e-15!39;UBERON:0006240!2.49e-15!39;UBERON:0001017!2.13e-14!73;UBERON:0005743!2.13e-14!73;UBERON:0000073!3.05e-13!75;UBERON:0001016!3.05e-13!75;UBERON:0003056!4.20e-13!49;UBERON:0000956!7.28e-13!21;UBERON:0001869!7.28e-13!21;UBERON:0000203!7.28e-13!21;UBERON:0002346!6.36e-11!71;UBERON:0003075!6.36e-11!71;UBERON:0007284!6.36e-11!71;UBERON:0002619!1.04e-10!17;UBERON:0004121!3.95e-08!102;UBERON:0000924!3.95e-08!102;UBERON:0006601!3.95e-08!102;UBERON:0002021!1.10e-07!10;UBERON:0000411!1.10e-07!10;UBERON:0001950!1.10e-07!10;UBERON:0000064!4.76e-07!99;UBERON:0007811!8.14e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.66e-21,54;UBERON:0001049,4.74e-20,52;UBERON:0005068,4.74e-20,52;UBERON:0006241,4.74e-20,52;UBERON:0007135,4.74e-20,52;UBERON:0000955,2.44e-18,47;UBERON:0006238,2.44e-18,47;UBERON:0002020,3.27e-18,34;UBERON:0002616,7.29e-18,46;UBERON:0003528,1.06e-16,29;UBERON:0002791,1.06e-16,29;UBERON:0001893,1.06e-16,29;UBERON:0003080,7.82e-16,40;UBERON:0002780,2.49e-15,39;UBERON:0001890,2.49e-15,39;UBERON:0006240,2.49e-15,39;UBERON:0002346,1.60e-14,64;UBERON:0003075,1.60e-14,64;UBERON:0007284,1.60e-14,64;UBERON:0001017,2.25e-14,73;UBERON:0001016,3.20e-13,75;UBERON:0003056,4.20e-13,49;UBERON:0000956,7.28e-13,21;UBERON:0001869,7.28e-13,21;UBERON:0000203,7.28e-13,21;UBERON:0010371,6.10e-12,73;UBERON:0002619,1.04e-10,17;UBERON:0004121,1.93e-10,95;UBERON:0000924,1.93e-10,95;UBERON:0006601,1.93e-10,95;UBERON:0011216,9.55e-08,194;UBERON:0002021,1.10e-07,10;UBERON:0000411,1.10e-07,10;UBERON:0001950,1.10e-07,10 | |||
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| |||
|short_description=p3@Add1 | |||
}} |
Revision as of 07:32, 14 September 2013
Short description: | p3@Add1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Add1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_NM_001024458, NM_001102444, NM_013457, uc008xcp.1, uc008xcq.1, uc008xcr.1_5end |
EntrezGene: | Add1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.99e-12 | 23 |
neuroblast (sensu Vertebrata) | 5.99e-12 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.66e-21 | 54 |
neural tube | 4.74e-20 | 52 |
neural rod | 4.74e-20 | 52 |
future spinal cord | 4.74e-20 | 52 |
neural keel | 4.74e-20 | 52 |
brain | 2.44e-18 | 47 |
future brain | 2.44e-18 | 47 |
gray matter | 3.27e-18 | 34 |
regional part of brain | 7.29e-18 | 46 |
brain grey matter | 1.06e-16 | 29 |
regional part of telencephalon | 1.06e-16 | 29 |
telencephalon | 1.06e-16 | 29 |
anterior neural tube | 7.82e-16 | 40 |
regional part of forebrain | 2.49e-15 | 39 |
forebrain | 2.49e-15 | 39 |
future forebrain | 2.49e-15 | 39 |
neurectoderm | 1.60e-14 | 64 |
neural plate | 1.60e-14 | 64 |
presumptive neural plate | 1.60e-14 | 64 |
central nervous system | 2.25e-14 | 73 |
nervous system | 3.20e-13 | 75 |
pre-chordal neural plate | 4.20e-13 | 49 |
cerebral cortex | 7.28e-13 | 21 |
cerebral hemisphere | 7.28e-13 | 21 |
pallium | 7.28e-13 | 21 |
ecto-epithelium | 6.10e-12 | 73 |
regional part of cerebral cortex | 1.04e-10 | 17 |
ectoderm-derived structure | 1.93e-10 | 95 |
ectoderm | 1.93e-10 | 95 |
presumptive ectoderm | 1.93e-10 | 95 |
organ system subdivision | 9.55e-08 | 194 |
occipital lobe | 1.10e-07 | 10 |
visual cortex | 1.10e-07 | 10 |
neocortex | 1.10e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.