FFCP PHASE1:Hg19::chr1:85155939..85155984,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=117178 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16509 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc001dkg.2,uc001dkh.2,uc009wci.2,uc010orz.1_5end | |||
|coexpression_cluster_id=C3999 | |||
|description=CAGE_peak_2_at_SSX2IP_5end | |||
|id=chr1:85155939..85155984,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!5.46e-12!239;DOID:162!1.03e-10!235;DOID:305!1.63e-08!106;DOID:0050687!5.07e-08!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!3.93e-18!32;UBERON:0002780!7.39e-18!41;UBERON:0001890!7.39e-18!41;UBERON:0006240!7.39e-18!41;UBERON:0003080!9.21e-17!42;UBERON:0001893!1.76e-16!34;UBERON:0001017!3.15e-16!82;UBERON:0005743!6.88e-16!86;UBERON:0002791!7.02e-16!33;UBERON:0000073!8.59e-16!94;UBERON:0001016!8.59e-16!94;UBERON:0000955!1.92e-15!69;UBERON:0006238!1.92e-15!69;UBERON:0000956!7.65e-15!25;UBERON:0000203!7.65e-15!25;UBERON:0002020!9.50e-15!34;UBERON:0003528!9.50e-15!34;UBERON:0002619!1.78e-13!22;UBERON:0002616!1.83e-13!59;UBERON:0001049!4.65e-13!57;UBERON:0005068!4.65e-13!57;UBERON:0006241!4.65e-13!57;UBERON:0007135!4.65e-13!57;UBERON:0001950!1.59e-12!20;UBERON:0003056!4.13e-12!61;UBERON:0000033!9.56e-12!123;UBERON:0000153!1.00e-11!129;UBERON:0007811!1.00e-11!129;UBERON:0003075!5.95e-10!86;UBERON:0007284!5.95e-10!86;UBERON:0004121!2.30e-09!169;UBERON:0002346!8.05e-09!90;UBERON:0000924!1.25e-08!173;UBERON:0006601!1.25e-08!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;5.23e-21;32!UBERON:0002791;1.79e-19;32!UBERON:0000956;5.89e-19;25!UBERON:0000203;5.89e-19;25!UBERON:0001893;2.85e-18;34!UBERON:0003528;1.78e-17;34!UBERON:0002020;1.78e-17;34!UBERON:0002619;5.05e-17;22!UBERON:0001950;9.14e-16;20!UBERON:0002780;1.32e-15;41!UBERON:0001890;1.32e-15;41!UBERON:0000073;4.08e-10;53!UBERON:0002616;4.08e-10;53!UBERON:0000955;1.13e-09;68!UBERON:0001017;7.72e-09;75!UBERON:0001016;6.03e-08;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001869,5.10e-23,32;UBERON:0002780,3.43e-22,41;UBERON:0001890,3.43e-22,41;UBERON:0003080,3.43e-22,41;UBERON:0006240,3.43e-22,41;UBERON:0002791,4.38e-21,32;UBERON:0001893,8.01e-21,34;UBERON:0001017,1.45e-19,81;UBERON:0000956,4.01e-19,25;UBERON:0000203,4.01e-19,25;UBERON:0000955,4.56e-19,68;UBERON:0006238,4.56e-19,68;UBERON:0000073,4.62e-19,53;UBERON:0002616,4.62e-19,53;UBERON:0003528,4.84e-19,34;UBERON:0002020,4.84e-19,34;UBERON:0001016,5.28e-19,89;UBERON:0002619,2.59e-17,22;UBERON:0001049,4.21e-17,56;UBERON:0005068,4.21e-17,56;UBERON:0006241,4.21e-17,56;UBERON:0007135,4.21e-17,56;UBERON:0001950,4.67e-16,20;UBERON:0003056,8.34e-16,61;UBERON:0003075,1.42e-12,82;UBERON:0007284,1.42e-12,82;UBERON:0011216,1.15e-11,223;UBERON:0010371,3.62e-11,104;UBERON:0002346,3.72e-11,86;UBERON:0004121,3.38e-10,171;UBERON:0000924,3.38e-10,171;UBERON:0006601,3.38e-10,171;UBERON:0010314,1.15e-07,132 | |||
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| |||
|short_description=p2@SSX2IP | |||
}} |
Revision as of 19:19, 10 January 2014
Short description: | p2@SSX2IP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SSX2IP_5end |
Coexpression cluster: | C3999_anaplastic_Fibroblast_putamen_caudate_eye_frontal_testis |
Association with transcript: | 0bp_to_uc001dkg.2, uc001dkh.2, uc009wci.2, uc010orz.1_5end |
EntrezGene: | SSX2IP |
HGNC: | 16509 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebral hemisphere | 5.10e-23 | 32 |
regional part of forebrain | 3.43e-22 | 41 |
forebrain | 3.43e-22 | 41 |
anterior neural tube | 3.43e-22 | 41 |
future forebrain | 3.43e-22 | 41 |
regional part of telencephalon | 4.38e-21 | 32 |
telencephalon | 8.01e-21 | 34 |
central nervous system | 1.45e-19 | 81 |
cerebral cortex | 4.01e-19 | 25 |
pallium | 4.01e-19 | 25 |
brain | 4.56e-19 | 68 |
future brain | 4.56e-19 | 68 |
regional part of nervous system | 4.62e-19 | 53 |
regional part of brain | 4.62e-19 | 53 |
brain grey matter | 4.84e-19 | 34 |
gray matter | 4.84e-19 | 34 |
nervous system | 5.28e-19 | 89 |
regional part of cerebral cortex | 2.59e-17 | 22 |
neural tube | 4.21e-17 | 56 |
neural rod | 4.21e-17 | 56 |
future spinal cord | 4.21e-17 | 56 |
neural keel | 4.21e-17 | 56 |
neocortex | 4.67e-16 | 20 |
pre-chordal neural plate | 8.34e-16 | 61 |
neural plate | 1.42e-12 | 82 |
presumptive neural plate | 1.42e-12 | 82 |
organ system subdivision | 1.15e-11 | 223 |
ecto-epithelium | 3.62e-11 | 104 |
neurectoderm | 3.72e-11 | 86 |
ectoderm-derived structure | 3.38e-10 | 171 |
ectoderm | 3.38e-10 | 171 |
presumptive ectoderm | 3.38e-10 | 171 |
structure with developmental contribution from neural crest | 1.15e-07 | 132 |