FFCP PHASE1:Hg19::chr15:56535468..56535521,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64864 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25777 | |||
|TSSclassifier=strong | |||
|UniProt=Q2KHR2,C9JU50 | |||
|association_with_transcript=0bp_to_ENST00000317318,ENST00000422057,ENST00000423270,NM_022841,uc010bfn.2_5end | |||
|description=CAGE_peak_2_at_RFX7_5end | |||
|id=chr15:56535468..56535521,- | |||
|ontology_enrichment_celltype=CL:0000037!3.34e-07!172;CL:0000566!3.34e-07!172 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1240!2.76e-07!39;DOID:8692!5.75e-07!31;DOID:2531!9.74e-07!51;DOID:0060083!9.74e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:1240,3.61e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0001017!8.40e-22!82;UBERON:0005743!1.66e-20!86;UBERON:0000073!4.48e-20!94;UBERON:0001016!4.48e-20!94;UBERON:0001049!7.42e-19!57;UBERON:0005068!7.42e-19!57;UBERON:0006241!7.42e-19!57;UBERON:0007135!7.42e-19!57;UBERON:0000955!1.29e-16!69;UBERON:0006238!1.29e-16!69;UBERON:0002616!4.32e-15!59;UBERON:0003080!5.73e-15!42;UBERON:0002780!7.14e-15!41;UBERON:0001890!7.14e-15!41;UBERON:0006240!7.14e-15!41;UBERON:0007023!2.99e-14!115;UBERON:0002346!6.93e-14!90;UBERON:0003075!6.03e-13!86;UBERON:0007284!6.03e-13!86;UBERON:0002020!1.08e-11!34;UBERON:0003528!1.08e-11!34;UBERON:0001893!1.39e-11!34;UBERON:0000924!1.52e-11!173;UBERON:0006601!1.52e-11!173;UBERON:0002791!2.78e-11!33;UBERON:0000153!2.81e-11!129;UBERON:0007811!2.81e-11!129;UBERON:0001869!6.52e-11!32;UBERON:0004121!9.44e-11!169;UBERON:0003056!1.03e-10!61;UBERON:0000033!7.08e-10!123;UBERON:0000956!7.53e-09!25;UBERON:0000203!7.53e-09!25;UBERON:0001950!2.20e-08!20;UBERON:0002619!4.14e-08!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;4.10e-12;53!UBERON:0002616;4.10e-12;53!UBERON:0002780;5.00e-12;41!UBERON:0001890;5.00e-12;41!UBERON:0001893;3.35e-11;34!UBERON:0001869;4.56e-11;32!UBERON:0003528;5.62e-11;34!UBERON:0002020;5.62e-11;34!UBERON:0002791;1.03e-10;32!UBERON:0000956;1.98e-09;25!UBERON:0000203;1.98e-09;25!UBERON:0001950;2.26e-09;20!UBERON:0001017;3.80e-09;75!UBERON:0001016;6.53e-09;83!UBERON:0002619;1.12e-08;22!UBERON:0000955;1.31e-08;68!UBERON:0000922;5.80e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.96e-25,81;UBERON:0001016,3.21e-24,89;UBERON:0001049,3.68e-22,56;UBERON:0005068,3.68e-22,56;UBERON:0006241,3.68e-22,56;UBERON:0007135,3.68e-22,56;UBERON:0000073,9.53e-21,53;UBERON:0002616,9.53e-21,53;UBERON:0000955,1.67e-18,68;UBERON:0006238,1.67e-18,68;UBERON:0002780,1.88e-17,41;UBERON:0001890,1.88e-17,41;UBERON:0003080,1.88e-17,41;UBERON:0006240,1.88e-17,41;UBERON:0002346,2.03e-17,86;UBERON:0003075,3.02e-16,82;UBERON:0007284,3.02e-16,82;UBERON:0003056,9.62e-14,61;UBERON:0003528,1.44e-13,34;UBERON:0002020,1.44e-13,34;UBERON:0001893,1.96e-13,34;UBERON:0004121,6.36e-13,171;UBERON:0000924,6.36e-13,171;UBERON:0006601,6.36e-13,171;UBERON:0007023,7.58e-13,114;UBERON:0010371,9.35e-13,104;UBERON:0001869,1.30e-12,32;UBERON:0002791,1.59e-12,32;UBERON:0000956,4.35e-10,25;UBERON:0000203,4.35e-10,25;UBERON:0001950,6.13e-10,20;UBERON:0002619,3.53e-09,22 | |||
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| |||
|short_description=p2@RFX7 | |||
}} |
Revision as of 23:43, 11 January 2014
Short description: | p2@RFX7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RFX7_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000317318, ENST00000422057, ENST00000423270, NM_022841, uc010bfn.2_5end |
EntrezGene: | RFX7 |
HGNC: | 25777 |
UniProt: | Q2KHR2C9JU50 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 8.96e-25 | 81 |
nervous system | 3.21e-24 | 89 |
neural tube | 3.68e-22 | 56 |
neural rod | 3.68e-22 | 56 |
future spinal cord | 3.68e-22 | 56 |
neural keel | 3.68e-22 | 56 |
regional part of nervous system | 9.53e-21 | 53 |
regional part of brain | 9.53e-21 | 53 |
brain | 1.67e-18 | 68 |
future brain | 1.67e-18 | 68 |
regional part of forebrain | 1.88e-17 | 41 |
forebrain | 1.88e-17 | 41 |
anterior neural tube | 1.88e-17 | 41 |
future forebrain | 1.88e-17 | 41 |
neurectoderm | 2.03e-17 | 86 |
neural plate | 3.02e-16 | 82 |
presumptive neural plate | 3.02e-16 | 82 |
pre-chordal neural plate | 9.62e-14 | 61 |
brain grey matter | 1.44e-13 | 34 |
gray matter | 1.44e-13 | 34 |
telencephalon | 1.96e-13 | 34 |
ectoderm-derived structure | 6.36e-13 | 171 |
ectoderm | 6.36e-13 | 171 |
presumptive ectoderm | 6.36e-13 | 171 |
adult organism | 7.58e-13 | 114 |
ecto-epithelium | 9.35e-13 | 104 |
cerebral hemisphere | 1.30e-12 | 32 |
regional part of telencephalon | 1.59e-12 | 32 |
cerebral cortex | 4.35e-10 | 25 |
pallium | 4.35e-10 | 25 |
neocortex | 6.13e-10 | 20 |
regional part of cerebral cortex | 3.53e-09 | 22 |
Ontology term | p-value | n |
---|---|---|
leukemia | 3.61e-07 | 39 |