FFCP PHASE1:Hg19::chr2:54784868..54784919,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr2:54784868..54784919,+ | |||
|id=chr2:54784868..54784919,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.33e-56!254;CL:0000223!3.70e-16!59;CL:0002076!2.89e-12!43;CL:0000076!1.28e-11!62;CL:0002321!4.30e-08!248;CL:0000220!5.20e-08!246;CL:0000077!1.65e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0002076;7.98e-13;42!CL:0000077;2.96e-09;19!CL:1000507;1.28e-08;10!CL:1000494;1.28e-08;10!CL:0002368;3.03e-08;13!CL:1000449;1.10e-07;15!CL:1000497;1.32e-07;17!CL:0002518;1.32e-07;17!CL:0000082;4.26e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.14e-59,253;CL:0000223,1.26e-20,58;CL:0002076,6.31e-16,42;CL:0000076,4.47e-12,63;CL:0000077,2.38e-09,19;CL:1000507,1.74e-08,10;CL:1000494,1.74e-08,10;CL:0002368,3.97e-08,13;CL:1000449,1.39e-07,15;CL:1000497,1.61e-07,17;CL:0002518,1.61e-07,17;CL:0000082,5.41e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000223;1.16e-10;58!UBERON:0008947;1.47e-09;29!UBERON:0001041;3.45e-09;30!UBERON:0006595;8.69e-08;86 | |||
|ontology_enrichment_disease=DOID:305!2.76e-39!106;DOID:0050687!1.71e-35!143;DOID:162!1.04e-20!235;DOID:14566!3.12e-20!239;DOID:299!5.75e-10!25;DOID:1749!1.11e-08!14;DOID:7!7.25e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:299;1.64e-12;25!DOID:305;1.82e-12;106!DOID:1749;7.37e-11;14!DOID:0050687;1.78e-08;143 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.94e-47,106;DOID:0050687,7.02e-41,143;DOID:162,1.16e-25,235;DOID:14566,3.93e-25,239;DOID:299,1.20e-12,25;DOID:1749,7.04e-11,14;DOID:7,1.11e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0004119!5.68e-27!169;UBERON:0000925!5.68e-27!169;UBERON:0006595!5.68e-27!169;UBERON:0004921!5.34e-24!129;UBERON:0004185!5.34e-24!129;UBERON:0001007!8.56e-24!155;UBERON:0001555!8.56e-24!155;UBERON:0007026!8.56e-24!155;UBERON:0000077!3.04e-21!130;UBERON:0000466!1.62e-18!126;UBERON:0001041!4.69e-18!98;UBERON:0005177!1.29e-16!107;UBERON:0003104!1.01e-15!238;UBERON:0009142!1.01e-15!238;UBERON:0009569!4.79e-14!113;UBERON:0005911!1.57e-13!82;UBERON:0001048!1.96e-13!168;UBERON:0000464!3.76e-13!104;UBERON:0005172!2.98e-12!55;UBERON:0005173!2.98e-12!55;UBERON:0001004!2.43e-11!72;UBERON:0000481!5.81e-11!347;UBERON:0002417!8.12e-11!61;UBERON:0000916!8.12e-11!61;UBERON:0000065!1.19e-09!53;UBERON:0008947!2.55e-09!38;UBERON:0003258!2.55e-09!38;UBERON:0002553!2.72e-09!70;UBERON:0002100!7.63e-09!216;UBERON:0005153!1.94e-08!37;UBERON:0006554!2.15e-08!44;UBERON:0003929!2.94e-08!54;UBERON:0000072!3.52e-08!46;UBERON:0009497!4.00e-08!25;UBERON:0000015!4.00e-08!25;UBERON:0002423!4.00e-08!25;UBERON:0006235!4.00e-08!25;UBERON:0004161!4.00e-08!25;UBERON:0002365!4.24e-08!31;UBERON:0002330!4.24e-08!31;UBERON:0002530!4.41e-08!59;UBERON:0005409!4.42e-08!35;UBERON:0009856!6.35e-08!26;UBERON:0001008!7.17e-08!45;UBERON:0003886!7.69e-08!63;UBERON:0007499!1.37e-07!25;UBERON:0005157!2.55e-07!51;UBERON:0009854!5.93e-07!23;UBERON:0000160!7.15e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0005172;4.89e-10;52!UBERON:0005173;4.89e-10;52!UBERON:0002113;5.93e-10;24!UBERON:0011143;5.93e-10;24!UBERON:0006554;1.85e-09;30!UBERON:0001008;1.85e-09;30!UBERON:0000065;2.62e-09;44!UBERON:0002423;2.95e-09;25!UBERON:0000072;7.62e-09;37!UBERON:0004211;1.28e-08;10!UBERON:0009773;1.28e-08;10!UBERON:0001231;1.28e-08;10!UBERON:0004810;1.28e-08;10!UBERON:0005177;3.71e-08;99!UBERON:0000489;4.43e-08;29!UBERON:0004807;5.29e-08;22!UBERON:0006555;1.10e-07;15!UBERON:0004819;1.10e-07;15!UBERON:0001285;1.10e-07;15!UBERON:0007684;1.10e-07;15!UBERON:0002365;1.29e-07;31!UBERON:0002330;1.29e-07;31!UBERON:0001851;2.55e-07;15!UBERON:0002417;3.69e-07;58!UBERON:0000916;3.69e-07;58!UBERON:0004802;4.26e-07;19!UBERON:0000115;4.26e-07;19!UBERON:0005409;4.42e-07;22!UBERON:0004921;4.66e-07;33!UBERON:0002048;5.50e-07;22!UBERON:0000117;5.50e-07;22!UBERON:0000171;5.50e-07;22!UBERON:0000170;5.50e-07;22!UBERON:0005911;8.23e-07;36!UBERON:0001737;8.33e-07;9!UBERON:0001557;8.33e-07;9 | |||
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| |||
|short_description=p@chr2:54784868..54784919,+ | |||
}} |
Revision as of 03:10, 21 January 2014
Short description: | p@chr2:54784868..54784919, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:54784868..54784919, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.14e-59 | 253 |
endodermal cell | 1.26e-20 | 58 |
endo-epithelial cell | 6.31e-16 | 42 |
squamous epithelial cell | 4.47e-12 | 63 |
mesothelial cell | 2.38e-09 | 19 |
kidney tubule cell | 1.74e-08 | 10 |
nephron tubule epithelial cell | 1.74e-08 | 10 |
respiratory epithelial cell | 3.97e-08 | 13 |
epithelial cell of nephron | 1.39e-07 | 15 |
kidney cell | 1.61e-07 | 17 |
kidney epithelial cell | 1.61e-07 | 17 |
epithelial cell of lung | 5.41e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.94e-47 | 106 |
cell type cancer | 7.02e-41 | 143 |
cancer | 1.16e-25 | 235 |
disease of cellular proliferation | 3.93e-25 | 239 |
adenocarcinoma | 1.20e-12 | 25 |
squamous cell carcinoma | 7.04e-11 | 14 |
disease of anatomical entity | 1.11e-07 | 39 |