FFCP PHASE1:Hg19::chr3:138327877..138327934,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55179 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18703 | |||
|TSSclassifier=strong | |||
|UniProt=Q9NVQ4 | |||
|association_with_transcript=0bp_to_ENST00000393034,NM_018147,uc003ess.2_5end | |||
|description=CAGE_peak_2_at_FAIM_5end | |||
|id=chr3:138327877..138327934,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.09e-07!254 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.32e-07,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!3.60e-11!106;DOID:0050687!4.95e-11!143;DOID:14566!2.16e-07!239;DOID:162!4.05e-07!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,7.38e-11,143;DOID:305,7.78e-11,106;DOID:14566,2.28e-07,239;DOID:162,4.30e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.74e-12!57;UBERON:0005068!1.74e-12!57;UBERON:0006241!1.74e-12!57;UBERON:0007135!1.74e-12!57;UBERON:0000153!4.53e-11!129;UBERON:0007811!4.53e-11!129;UBERON:0003075!7.93e-11!86;UBERON:0007284!7.93e-11!86;UBERON:0000481!9.76e-11!347;UBERON:0002346!1.46e-10!90;UBERON:0002616!2.29e-10!59;UBERON:0001017!5.55e-10!82;UBERON:0000033!9.93e-10!123;UBERON:0000073!1.04e-09!94;UBERON:0001016!1.04e-09!94;UBERON:0000955!1.18e-09!69;UBERON:0006238!1.18e-09!69;UBERON:0002780!1.29e-09!41;UBERON:0001890!1.29e-09!41;UBERON:0006240!1.29e-09!41;UBERON:0005743!1.71e-09!86;UBERON:0003080!5.91e-09!42;UBERON:0003056!1.14e-08!61;UBERON:0004121!2.44e-08!169;UBERON:0000924!2.77e-08!173;UBERON:0006601!2.77e-08!173;UBERON:0000475!1.94e-07!365;UBERON:0002020!2.76e-07!34;UBERON:0003528!2.76e-07!34;UBERON:0001893!3.61e-07!34;UBERON:0004119!3.88e-07!169;UBERON:0000925!3.88e-07!169;UBERON:0006595!3.88e-07!169;UBERON:0002791!6.02e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.54e-07;41!UBERON:0001890;1.54e-07;41!UBERON:0000073;1.69e-07;53!UBERON:0002616;1.69e-07;53!UBERON:0003528;9.23e-07;34!UBERON:0002020;9.23e-07;34!UBERON:0001893;9.50e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011216,8.01e-14,223;UBERON:0001049,3.76e-13,56;UBERON:0005068,3.76e-13,56;UBERON:0006241,3.76e-13,56;UBERON:0007135,3.76e-13,56;UBERON:0003075,8.38e-12,82;UBERON:0007284,8.38e-12,82;UBERON:0000073,1.09e-11,53;UBERON:0002616,1.09e-11,53;UBERON:0002346,1.80e-11,86;UBERON:0010371,2.10e-11,104;UBERON:0001016,1.81e-10,89;UBERON:0001017,3.55e-10,81;UBERON:0000955,6.89e-10,68;UBERON:0006238,6.89e-10,68;UBERON:0003056,1.34e-09,61;UBERON:0002780,1.44e-09,41;UBERON:0001890,1.44e-09,41;UBERON:0003080,1.44e-09,41;UBERON:0006240,1.44e-09,41;UBERON:0004121,1.81e-08,171;UBERON:0000924,1.81e-08,171;UBERON:0006601,1.81e-08,171;UBERON:0003528,3.13e-07,34;UBERON:0002020,3.13e-07,34;UBERON:0001893,4.11e-07,34;UBERON:0010314,4.65e-07,132 | |||
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| |||
|short_description=p2@FAIM | |||
}} |
Revision as of 21:36, 21 January 2014
Short description: | p2@FAIM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_FAIM_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000393034, NM_018147, uc003ess.2_5end |
EntrezGene: | FAIM |
HGNC: | 18703 |
UniProt: | Q9NVQ4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.32e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
organ system subdivision | 8.01e-14 | 223 |
neural tube | 3.76e-13 | 56 |
neural rod | 3.76e-13 | 56 |
future spinal cord | 3.76e-13 | 56 |
neural keel | 3.76e-13 | 56 |
neural plate | 8.38e-12 | 82 |
presumptive neural plate | 8.38e-12 | 82 |
regional part of nervous system | 1.09e-11 | 53 |
regional part of brain | 1.09e-11 | 53 |
neurectoderm | 1.80e-11 | 86 |
ecto-epithelium | 2.10e-11 | 104 |
nervous system | 1.81e-10 | 89 |
central nervous system | 3.55e-10 | 81 |
brain | 6.89e-10 | 68 |
future brain | 6.89e-10 | 68 |
pre-chordal neural plate | 1.34e-09 | 61 |
regional part of forebrain | 1.44e-09 | 41 |
forebrain | 1.44e-09 | 41 |
anterior neural tube | 1.44e-09 | 41 |
future forebrain | 1.44e-09 | 41 |
ectoderm-derived structure | 1.81e-08 | 171 |
ectoderm | 1.81e-08 | 171 |
presumptive ectoderm | 1.81e-08 | 171 |
brain grey matter | 3.13e-07 | 34 |
gray matter | 3.13e-07 | 34 |
telencephalon | 4.11e-07 | 34 |
structure with developmental contribution from neural crest | 4.65e-07 | 132 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 7.38e-11 | 143 |
carcinoma | 7.78e-11 | 106 |
disease of cellular proliferation | 2.28e-07 | 239 |
cancer | 4.30e-07 | 235 |