FFCP PHASE1:Hg19::chr6:138744950..138744953,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=57224 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=21021 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=-70bp_to_BC020940_5end | |||
|description=CAGE_peak_4_at_NHSL1_5end | |||
|id=chr6:138744950..138744953,- | |||
|ontology_enrichment_celltype=CL:0000220!1.88e-20!246;CL:0002321!2.62e-20!248;CL:0000066!6.69e-19!254;CL:0002078!1.69e-11!44;CL:0000115!3.47e-10!35;CL:0000213!1.44e-08!57;CL:0000215!1.44e-08!57;CL:0002139!6.91e-08!24;CL:0000222!7.32e-08!119;CL:0000223!8.87e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000115;1.08e-09;36!CL:0002078;1.95e-09;45!CL:0002139;9.96e-09;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.27e-19,250;CL:0000066,5.72e-15,253;CL:0002078,8.51e-13,45;CL:0000115,1.40e-11,36;CL:0002139,7.84e-09,24;CL:0000213,1.19e-08,58;CL:0000215,1.19e-08,58;CL:0000222,1.54e-07,121;CL:0000221,9.36e-07,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!1.48e-19!312;UBERON:0000483!1.64e-18!309;UBERON:0000481!4.82e-14!347;UBERON:0000468!3.53e-13!659;UBERON:0000922!2.71e-12!612;UBERON:0000467!3.66e-12!625;UBERON:0000477!5.47e-12!286;UBERON:0000480!6.94e-12!626;UBERON:0002050!7.36e-12!605;UBERON:0005423!7.36e-12!605;UBERON:0000923!1.34e-11!604;UBERON:0005291!1.34e-11!604;UBERON:0006598!1.34e-11!604;UBERON:0002532!1.34e-11!604;UBERON:0000025!4.79e-11!194;UBERON:0004111!5.84e-11!241;UBERON:0000475!1.70e-09!365;UBERON:0000064!3.34e-09!219;UBERON:0001048!3.25e-08!168;UBERON:0003075!3.56e-08!86;UBERON:0007284!3.56e-08!86;UBERON:0004121!3.93e-08!169;UBERON:0003914!6.63e-08!118;UBERON:0000924!1.23e-07!173;UBERON:0006601!1.23e-07!173;UBERON:0002049!1.53e-07!79;UBERON:0007798!1.53e-07!79;UBERON:0000063!1.93e-07!97;UBERON:0002346!2.02e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0000970;1.10e-07;20!UBERON:0002104;1.41e-07;21!UBERON:0001456;1.41e-07;21!UBERON:0000019;1.90e-07;19!UBERON:0000047;1.90e-07;19!UBERON:0004088;1.90e-07;19!UBERON:0010230;1.90e-07;19!UBERON:0000020;8.70e-07;23!UBERON:0001032;9.94e-07;24!UBERON:0004456;9.94e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,3.89e-17,309;UBERON:0000483,4.21e-16,306;UBERON:0010371,3.78e-10,104;UBERON:0000025,7.12e-09,192;UBERON:0003075,2.56e-08,82;UBERON:0007284,2.56e-08,82;UBERON:0004111,2.98e-08,240;UBERON:0011216,1.06e-07,223;UBERON:0002346,1.60e-07,86;UBERON:0002049,6.45e-07,78;UBERON:0007798,6.45e-07,78;UBERON:0001456,7.32e-07,22;UBERON:0000970,7.73e-07,21;UBERON:0002104,7.73e-07,21;UBERON:0004121,8.26e-07,171;UBERON:0000924,8.26e-07,171;UBERON:0006601,8.26e-07,171;UBERON:0006914,8.53e-07,25;UBERON:0000923,9.13e-07,560;UBERON:0010316,9.13e-07,560;UBERON:0005291,9.13e-07,560;UBERON:0006598,9.13e-07,560;UBERON:0010317,9.13e-07,560;UBERON:0002532,9.13e-07,560 | |||
|phase1_expression=1.81678379270557,2.14100523890983,2.25527046553554,1.0007329835313,1.34088328328186,1.74467704820074,0,1.26343974685366,0,1.47440361900905,4.18680700783456,0.873765488520689,1.58260186937072,0.990130823680373,2.98257638155124,1.34465029290355,1.20538905604795,2.19093027116212,3.90346239032406,7.26414242653049,6.32402142857184,12.2247341376454,2.86235987131057,2.05311637609326,2.00868223351684,3.05653622991805,3.9408282935974,3.62069594042925,0.393364276848904,0,0.464448369948228,0,1.8072355126695,14.7901604066715,0,0,0.293600439334847,0.553995408531877,0.601633342410425,0.651032612147555,0.895661896959697,1.29557466407592,2.06060454107349,0.436194716338694,0,0.242584061187816,0.464858073811369,0,0.619412741790207,0,0.512321413058201,0,0.344745680736619,0,0,0.188242339542605,0,0,0.306083892370903,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0.637812899895131,0.209658645508376,0.336985893439485,0.450530678524519,0.16072558669708,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,2.68280343881454,1.02290049474824,2.1686349143074,1.50401373190767,1.44846518960824,0,0,4.06499713805492,3.76939975686359,3.16205228495254,1.63723844372141,4.73583874780305,4.07862887062872,0.324547393654683,0.696518949197069,1.32957960518865,0,0,0,3.57772333260069,0,4.16568601929113,2.82653970962005,2.93649605346934,2.75118041940067,2.71693456497854,3.35941786920128,3.5576626268671,2.67776490211736,7.25092770796465,13.6848979029332,6.34561349625241,9.19157700864672,2.43042584364528,3.21479021822687,1.12264686313085,1.12611480483322,1.53316637465883,6.6448596169769,1.64881569537367,0,0,3.92484646928281,2.98183171017191,1.39293562831038,0.397227542439656,0.286836620748814,2.12801029319014,1.12135520028461,2.1349799145941,1.2333377420858,1.24484414159907,1.75123873690594,1.79808093424805,3.02714855289863,1.72852777344,1.40592859100278,0,1.71141546463335,0.597794722207204,1.52664848236894,2.26622122115384,1.54495887372473,0.816616685019573,1.96534907698829,0.413303124703062,1.18800285728205,0.247266929278557,0.910161361938026,3.59309070908119,1.34668891163253,1.25118519871964,0,0.877955241761676,0.30648779579902,1.20190447125277,2.94923676216055,0.358779271377724,0,0,0,0.618315175430633,0.257640540045629,0.558350568994769,1.0126579934476,1.26668106709558,0,0.368199594569197,1.2931684545505,0.355009592516614,0.403008392910561,0.508681776931463,1.73934767846967,0.545492241181669,1.14721838155602,1.09776335516636,0.795178609928912,1.62671520017326,0.932949495138334,1.26160425437814,0.72995471815166,0,2.57296375277154,0,1.85747171212792,1.44375896333917,1.30137480043828,1.34867752062481,2.41011029883482,2.53676137284506,2.83243277320128,2.84724742933316,1.48314438976181,1.37355025587742,0.38474715694639,2.95262181849859,5.60967095213783,1.2347220339942,1.47008711385542,19.0132552232746,8.84544495009863,8.27105869353966,0,3.81264159483652,6.6911446016425,4.82901255797952,1.1240175325762,2.91534019993729,3.05541869023148,3.25808305310325,2.07986957055916,8.6598805215164,3.24605133930215,1.17408694235822,6.20775725372617,7.87075371380238,9.32245345949531,0.790204397959275,0,0.246217006087397,0.234004265139238,0.594524649154913,0,0.335964256397719,1.27597587518148,8.14982556595919,2.61570544662566,1.53353071666084,0,0.792435906119034,1.03664057770386,0.432359860250884,0.25248486685276,5.77830838058738,2.29193055334967,4.68869788840188,11.9750712215894,6.16964956219941,6.30720421472227,10.861404439962,3.02753927732474,7.41132117016576,3.74025257686845,1.16344544182,0,0,0.531876233169741,0,0.771622122786426,7.09245660116391,0.532844358032199,2.00169191121407,1.08524321078289,2.46972101034231,0.977208552881205,1.06617584622764,2.37585561880029,5.72734816413214,0.871533458600294,5.19859554146697,0,0.502257091432126,2.10833939483032,0,0,4.27910715122155,1.15825045334063,0.410952645100767,0.895304816199478,0.560425719967636,0,0,0,1.27047312111232,3.90419561572865,4.63973287666617,6.03058555203656,4.46557126157214,0,0,0,1.2269149171914,1.50051156317903,1.35632511849868,0,0.178428988797162,0.157702415033935,0.234282829985426,0.300946099727719,0,1.03473071292505,0,0,1.47702144595741,1.17480694477644,2.74514739048685,0.206768026122887,0.215714200818617,0.106727557803444,0.303127571446259,0,0.907170879989041,1.48864684691266,1.38115775959256,0.561320188866147,1.92208723883551,0.511707249066704,0.965123526861645,0,1.23367755042124,1.24293207719189,2.05317890034523,3.63478100428535,1.51073491997947,1.93375119346596,2.80709058424599,3.86740153530765,0.803701137152247,1.45672934405374,0.786746489756545,1.35359883872224,1.5403067420883,0.784349769176855,0,0.316654886678627,17.0600076106345,8.16449785327275,1.51141141271498,7.71136263451447,0.270946437543853,0.501689773854853,2.80363900349542,2.49322802678617,1.56712328305525,0,0,1.02580050046556,3.28014645699706,4.22991913063594,6.59462474545423,1.19040304263846,1.15513299888823,3.44559322797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| |||
|short_description=p4@NHSL1 | |||
}} |
Revision as of 14:14, 22 January 2014
Short description: | p4@NHSL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_NHSL1_5end |
Coexpression cluster: | NA |
Association with transcript: | -70bp_to_BC020940_5end |
EntrezGene: | NHSL1 |
HGNC: | 21021 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.27e-19 | 250 |
epithelial cell | 5.72e-15 | 253 |
meso-epithelial cell | 8.51e-13 | 45 |
endothelial cell | 1.40e-11 | 36 |
endothelial cell of vascular tree | 7.84e-09 | 24 |
lining cell | 1.19e-08 | 58 |
barrier cell | 1.19e-08 | 58 |
mesodermal cell | 1.54e-07 | 121 |
ectodermal cell | 9.36e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
cell layer | 3.89e-17 | 309 |
epithelium | 4.21e-16 | 306 |
ecto-epithelium | 3.78e-10 | 104 |
tube | 7.12e-09 | 192 |
neural plate | 2.56e-08 | 82 |
presumptive neural plate | 2.56e-08 | 82 |
anatomical conduit | 2.98e-08 | 240 |
organ system subdivision | 1.06e-07 | 223 |
neurectoderm | 1.60e-07 | 86 |
vasculature | 6.45e-07 | 78 |
vascular system | 6.45e-07 | 78 |
face | 7.32e-07 | 22 |
eye | 7.73e-07 | 21 |
visual system | 7.73e-07 | 21 |
ectoderm-derived structure | 8.26e-07 | 171 |
ectoderm | 8.26e-07 | 171 |
presumptive ectoderm | 8.26e-07 | 171 |
squamous epithelium | 8.53e-07 | 25 |
germ layer | 9.13e-07 | 560 |
germ layer / neural crest | 9.13e-07 | 560 |
embryonic tissue | 9.13e-07 | 560 |
presumptive structure | 9.13e-07 | 560 |
germ layer / neural crest derived structure | 9.13e-07 | 560 |
epiblast (generic) | 9.13e-07 | 560 |