FFCP PHASE1:Hg19::chr9:137218341..137218361,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6256 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10477 | |||
|TSSclassifier=strong | |||
|UniProt=F1D8Q5,P19793,Q6P3U7 | |||
|association_with_transcript=25bp_to_NM_002957,uc004cfb.2_5end | |||
|coexpression_cluster_id=C4808 | |||
|description=CAGE_peak_2_at_RXRA_5end | |||
|id=chr9:137218341..137218361,+ | |||
|ontology_enrichment_celltype=CL:0000766!1.30e-20!76;CL:0002057!3.71e-19!42;CL:0002194!1.89e-18!63;CL:0000576!1.89e-18!63;CL:0000040!1.89e-18!63;CL:0000559!1.89e-18!63;CL:0000860!6.24e-18!45;CL:0002009!3.53e-17!65;CL:0000839!3.15e-16!70;CL:0000557!4.06e-15!71;CL:0000763!1.06e-08!112;CL:0000049!1.06e-08!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.74e-15;33!CL:0002057;4.74e-15;33!CL:0000576;1.09e-13;48!CL:0000473;1.32e-13;39!CL:0000234;1.32e-13;39!CL:0000766;1.20e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,3.27e-21,72;CL:0000473,5.46e-20,48;CL:0000234,5.46e-20,48;CL:0000860,3.04e-19,42;CL:0002057,3.04e-19,42;CL:0002194,5.09e-19,59;CL:0000576,5.09e-19,59;CL:0000040,5.09e-19,59;CL:0000559,5.09e-19,59;CL:0002009,1.15e-17,61;CL:0000839,1.07e-16,66;CL:0000557,1.57e-15,67;CL:0000763,1.37e-08,108;CL:0000049,1.37e-08,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.63e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!5.03e-19!659;UBERON:0000922!3.26e-16!612;UBERON:0002050!2.52e-15!605;UBERON:0005423!2.52e-15!605;UBERON:0000923!4.80e-15!604;UBERON:0005291!4.80e-15!604;UBERON:0006598!4.80e-15!604;UBERON:0002532!4.80e-15!604;UBERON:0000467!7.53e-15!625;UBERON:0000480!1.77e-14!626;UBERON:0002405!1.15e-12!115;UBERON:0002371!4.11e-12!80;UBERON:0001474!6.31e-12!86;UBERON:0002390!1.17e-11!102;UBERON:0003061!1.17e-11!102;UBERON:0002193!2.08e-11!112;UBERON:0004765!3.28e-11!101;UBERON:0001434!3.28e-11!101;UBERON:0000926!9.62e-11!448;UBERON:0004120!9.62e-11!448;UBERON:0006603!9.62e-11!448;UBERON:0004119!9.96e-11!169;UBERON:0000925!9.96e-11!169;UBERON:0006595!9.96e-11!169;UBERON:0000062!1.94e-10!511;UBERON:0001007!5.09e-10!155;UBERON:0001555!5.09e-10!155;UBERON:0007026!5.09e-10!155;UBERON:0007023!7.53e-10!115;UBERON:0004921!2.12e-07!129;UBERON:0004185!2.12e-07!129;UBERON:0002204!7.38e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000922,4.03e-13,592;UBERON:0000923,2.08e-12,560;UBERON:0010316,2.08e-12,560;UBERON:0005291,2.08e-12,560;UBERON:0006598,2.08e-12,560;UBERON:0010317,2.08e-12,560;UBERON:0002532,2.08e-12,560;UBERON:0002050,2.30e-12,564;UBERON:0002371,2.61e-12,76;UBERON:0001474,4.34e-12,82;UBERON:0005423,7.23e-12,581;UBERON:0002390,1.25e-11,98;UBERON:0003061,1.25e-11,98;UBERON:0002193,2.34e-11,108;UBERON:0001434,2.50e-11,100;UBERON:0004765,4.07e-11,90;UBERON:0007023,1.19e-09,114;UBERON:0002405,1.37e-09,93;UBERON:0004119,1.81e-09,160;UBERON:0000925,1.81e-09,160;UBERON:0006595,1.81e-09,160;UBERON:0001007,1.25e-08,145;UBERON:0001555,1.25e-08,145;UBERON:0007026,1.25e-08,145;UBERON:0002204,6.59e-07,167 | |||
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| |||
|short_description=p2@RXRA | |||
}} |
Revision as of 03:59, 23 January 2014
Short description: | p2@RXRA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RXRA_5end |
Coexpression cluster: | C4808_Hepatocyte_keratoacanthoma_salivary_breast_liver_oral_Mesenchymal |
Association with transcript: | 25bp_to_NM_002957, uc004cfb.2_5end |
EntrezGene: | RXRA |
HGNC: | 10477 |
UniProt: | F1D8Q5P19793Q6P3U7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 3.27e-21 | 72 |
defensive cell | 5.46e-20 | 48 |
phagocyte | 5.46e-20 | 48 |
classical monocyte | 3.04e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.04e-19 | 42 |
monopoietic cell | 5.09e-19 | 59 |
monocyte | 5.09e-19 | 59 |
monoblast | 5.09e-19 | 59 |
promonocyte | 5.09e-19 | 59 |
macrophage dendritic cell progenitor | 1.15e-17 | 61 |
myeloid lineage restricted progenitor cell | 1.07e-16 | 66 |
granulocyte monocyte progenitor cell | 1.57e-15 | 67 |
myeloid cell | 1.37e-08 | 108 |
common myeloid progenitor | 1.37e-08 | 108 |
Ontology term | p-value | n |
---|---|---|
embryo | 4.03e-13 | 592 |
germ layer | 2.08e-12 | 560 |
germ layer / neural crest | 2.08e-12 | 560 |
embryonic tissue | 2.08e-12 | 560 |
presumptive structure | 2.08e-12 | 560 |
germ layer / neural crest derived structure | 2.08e-12 | 560 |
epiblast (generic) | 2.08e-12 | 560 |
embryonic structure | 2.30e-12 | 564 |
bone marrow | 2.61e-12 | 76 |
bone element | 4.34e-12 | 82 |
developing anatomical structure | 7.23e-12 | 581 |
hematopoietic system | 1.25e-11 | 98 |
blood island | 1.25e-11 | 98 |
hemolymphoid system | 2.34e-11 | 108 |
skeletal system | 2.50e-11 | 100 |
skeletal element | 4.07e-11 | 90 |
adult organism | 1.19e-09 | 114 |
immune system | 1.37e-09 | 93 |
endoderm-derived structure | 1.81e-09 | 160 |
endoderm | 1.81e-09 | 160 |
presumptive endoderm | 1.81e-09 | 160 |
digestive system | 1.25e-08 | 145 |
digestive tract | 1.25e-08 | 145 |
primitive gut | 1.25e-08 | 145 |
musculoskeletal system | 6.59e-07 | 167 |