FFCP PHASE1:Mm9::chr14:105657929..105657975,+: Difference between revisions
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{{FFCP|EntrezGene=76273|HGNC=|MCL_coexpression_id=240|UniProt=Q3V1V0|association_with_transcript=0bp_to_ENSMUST00000138283_5end|description=CAGE_peak_1_at_Ndfip2_5end|id=chr14:105657929..105657975,+|ontology_enrichment_celltype=CL:0002321!5.80e-09!70;CL:0000220!5.80e-09!70;CL:0000066!2.25e-07!25;CL:0000117!6.56e-07!23;CL:0000337!6.56e-07!23|ontology_enrichment_celltype_v019_2=CL:0002321,5.80e-09,70;CL:0000066,2.25e-07,25;CL:0000117,6.56e-07,23;CL:0000337,6.56e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.65e-12!75;UBERON:0001016!1.65e-12!75;UBERON:0001017!1.60e-11!73;UBERON:0005743!1.60e-11!73;UBERON:0004121!4.20e-11!102;UBERON:0000924!4.20e-11!102;UBERON:0006601!4.20e-11!102;UBERON:0002020!4.26e-11!34;UBERON:0001049!9.19e-11!52;UBERON:0005068!9.19e-11!52;UBERON:0006241!9.19e-11!52;UBERON:0007135!9.19e-11!52;UBERON:0000160!3.11e-10!43;UBERON:0000955!8.00e-10!50;UBERON:0006238!8.00e-10!50;UBERON:0002616!1.51e-09!49;UBERON:0002791!5.51e-09!29;UBERON:0003528!5.51e-09!29;UBERON:0001893!5.51e-09!29;UBERON:0000344!1.49e-08!15;UBERON:0000033!3.48e-08!63;UBERON:0003080!2.11e-07!40;UBERON:0001242!2.50e-07!13;UBERON:0000060!2.50e-07!13;UBERON:0001262!2.50e-07!13;UBERON:0004786!2.50e-07!13;UBERON:0002021!2.84e-07!10;UBERON:0000411!2.84e-07!10;UBERON:0001950!2.84e-07!10;UBERON:0002780!4.34e-07!39;UBERON:0001890!4.34e-07!39;UBERON:0006240!4.34e-07!39;UBERON:0002346!4.70e-07!71;UBERON:0003075!4.70e-07!71;UBERON:0007284!4.70e-07!71;UBERON:0000064!6.35e-07!99|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.65e-12,75;UBERON:0004121,1.76e-12,95;UBERON:0000924,1.76e-12,95;UBERON:0006601,1.76e-12,95;UBERON:0000073,1.45e-11,54;UBERON:0000160,1.57e-11,31;UBERON:0001017,1.60e-11,73;UBERON:0002020,4.26e-11,34;UBERON:0001049,9.19e-11,52;UBERON:0005068,9.19e-11,52;UBERON:0006241,9.19e-11,52;UBERON:0007135,9.19e-11,52;UBERON:0010371,7.34e-10,73;UBERON:0011216,2.94e-09,194;UBERON:0003528,5.51e-09,29;UBERON:0002791,5.51e-09,29;UBERON:0001893,5.51e-09,29;UBERON:0000955,1.12e-08,47;UBERON:0006238,1.12e-08,47;UBERON:0000344,1.49e-08,15;UBERON:0002616,2.07e-08,46;UBERON:0002346,2.31e-08,64;UBERON:0003075,2.31e-08,64;UBERON:0007284,2.31e-08,64;UBERON:0003080,2.11e-07,40;UBERON:0001242,2.50e-07,13;UBERON:0001262,2.50e-07,13;UBERON:0004786,2.50e-07,13;UBERON:0002021,2.84e-07,10;UBERON:0000411,2.84e-07,10;UBERON:0001950,2.84e-07,10;UBERON:0002780,4.34e-07,39;UBERON:0001890,4.34e-07,39;UBERON:0006240,4.34e-07,39|phase1_expression=26.9050063136054,167.857171074533,198.834667613227,238.341798509782,321.575058625555,60.2686586163684,52.7964567745888,12.6540856972745,47.5865880872634,60.3886477910743,36.1269912955816,37.3333704098174,9.24483941628511,10.9275503023747,3.66420737997229,5.06188168474565,3.49780939064073,10.567982539501,8.91243818437302,15.2780274647291,28.9147186513637,14.8936426801328,18.2839852397255,79.0362568599429,106.675315696234,157.339558167516,125.78250287845,97.6084684067077,98.2421078589453,87.9585152862158,69.6233803457657,4.44521471421742,7.99584223859941,0,25.7077941578634,25.6001353852078,21.8461211200735,6.69650609179052,8.5946887897618,5.75876118371178,12.9410927366823,12.294818729252,12.1377588257788,23.4168081434574,21.3905324873176,15.4179271815813,19.559783608701,17.6600376668162,14.9386604259441,21.970578595394,21.2779360870551,21.5628846547457,9.56360854529097,12.3311564141929,11.7632829699862,15.6928255981928,12.8940047972441,17.0171790451556,42.0818238587963,50.7831340101152,43.7343668419264,22.7025836486319,21.3430751066673,16.6481447697059,17.7995945262055,12.7886420690298,15.8788058574755,18.0582603501131,21.1526809109294,19.4408551197635,25.0286704008145,59.1297537715873,55.438003778855,21.435889862617,17.6355666673555,18.3843757322004,48.450987639731,52.7348706291825,47.6180253094355,42.0717257859318,43.548118354747,42.1939830150976,51.3696718162541,45.0210088025344,46.4506673241503,53.6224025562075,45.8436812173111,43.0582719856444,98.5955037198056,58.1901012822249,21.1601076752225,48.1837371109576,51.677821361789,31.3027851149934,29.2399387851451,23.2973981290615,29.0719949672726,13.9752864514007,22.6013824004496,14.1335829804136,31.8306128695298,12.8326477414318,40.7688383530633,14.2213340630666,38.1024232179737,38.0039798212648,34.88118670602,36.8813931492564,11.1343289968284,17.0708459924548,10.7560902595004,14.3098774806706,18.2186242832286,20.6490017557093,15.0513545133702,16.2109902815281,39.7983898052342,11.2787498397531,8.84610551949874,11.6472131962135,6.8460870722722,7.75800405016355,35.4144346314432,31.3275452802355,40.0043210013699,62.5869785261049,6.70964697233154,4.19931911695385,6.4805815807263,43.4392854273986,64.0500843946077,30.6596619155389,70.5726739980642,80.2946536017238,46.9600980704606,50.1325502879371,14.5630290305952,10.3257785606377,16.4269792981889,20.2024181651015,9.75903322220278,17.4725599369439,14.945156773844,16.1254155084215,16.2607232971674,14.8611915530426,12.8371362646828,18.3679393224701,10.347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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:76273 | |||
|HGNC= | |||
|MCL_coexpression_id=240 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q3V1V0 | |||
|association_with_transcript=0bp_to_ENSMUST00000138283_5end | |||
|cluster_id=chr14:105657929..105657975,+ | |||
|description=CAGE_peak_1_at_Ndfip2_5end | |||
|id=chr14:105657929..105657975,+ | |||
|ontology_enrichment_celltype=CL:0002321!5.80e-09!70;CL:0000220!5.80e-09!70;CL:0000066!2.25e-07!25;CL:0000117!6.56e-07!23;CL:0000337!6.56e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,5.80e-09,70;CL:0000066,2.25e-07,25;CL:0000117,6.56e-07,23;CL:0000337,6.56e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.65e-12!75;UBERON:0001016!1.65e-12!75;UBERON:0001017!1.60e-11!73;UBERON:0005743!1.60e-11!73;UBERON:0004121!4.20e-11!102;UBERON:0000924!4.20e-11!102;UBERON:0006601!4.20e-11!102;UBERON:0002020!4.26e-11!34;UBERON:0001049!9.19e-11!52;UBERON:0005068!9.19e-11!52;UBERON:0006241!9.19e-11!52;UBERON:0007135!9.19e-11!52;UBERON:0000160!3.11e-10!43;UBERON:0000955!8.00e-10!50;UBERON:0006238!8.00e-10!50;UBERON:0002616!1.51e-09!49;UBERON:0002791!5.51e-09!29;UBERON:0003528!5.51e-09!29;UBERON:0001893!5.51e-09!29;UBERON:0000344!1.49e-08!15;UBERON:0000033!3.48e-08!63;UBERON:0003080!2.11e-07!40;UBERON:0001242!2.50e-07!13;UBERON:0000060!2.50e-07!13;UBERON:0001262!2.50e-07!13;UBERON:0004786!2.50e-07!13;UBERON:0002021!2.84e-07!10;UBERON:0000411!2.84e-07!10;UBERON:0001950!2.84e-07!10;UBERON:0002780!4.34e-07!39;UBERON:0001890!4.34e-07!39;UBERON:0006240!4.34e-07!39;UBERON:0002346!4.70e-07!71;UBERON:0003075!4.70e-07!71;UBERON:0007284!4.70e-07!71;UBERON:0000064!6.35e-07!99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.65e-12,75;UBERON:0004121,1.76e-12,95;UBERON:0000924,1.76e-12,95;UBERON:0006601,1.76e-12,95;UBERON:0000073,1.45e-11,54;UBERON:0000160,1.57e-11,31;UBERON:0001017,1.60e-11,73;UBERON:0002020,4.26e-11,34;UBERON:0001049,9.19e-11,52;UBERON:0005068,9.19e-11,52;UBERON:0006241,9.19e-11,52;UBERON:0007135,9.19e-11,52;UBERON:0010371,7.34e-10,73;UBERON:0011216,2.94e-09,194;UBERON:0003528,5.51e-09,29;UBERON:0002791,5.51e-09,29;UBERON:0001893,5.51e-09,29;UBERON:0000955,1.12e-08,47;UBERON:0006238,1.12e-08,47;UBERON:0000344,1.49e-08,15;UBERON:0002616,2.07e-08,46;UBERON:0002346,2.31e-08,64;UBERON:0003075,2.31e-08,64;UBERON:0007284,2.31e-08,64;UBERON:0003080,2.11e-07,40;UBERON:0001242,2.50e-07,13;UBERON:0001262,2.50e-07,13;UBERON:0004786,2.50e-07,13;UBERON:0002021,2.84e-07,10;UBERON:0000411,2.84e-07,10;UBERON:0001950,2.84e-07,10;UBERON:0002780,4.34e-07,39;UBERON:0001890,4.34e-07,39;UBERON:0006240,4.34e-07,39 | |||
|phase1_expression=26.9050063136054,167.857171074533,198.834667613227,238.341798509782,321.575058625555,60.2686586163684,52.7964567745888,12.6540856972745,47.5865880872634,60.3886477910743,36.1269912955816,37.3333704098174,9.24483941628511,10.9275503023747,3.66420737997229,5.06188168474565,3.49780939064073,10.567982539501,8.91243818437302,15.2780274647291,28.9147186513637,14.8936426801328,18.2839852397255,79.0362568599429,106.675315696234,157.339558167516,125.78250287845,97.6084684067077,98.2421078589453,87.9585152862158,69.6233803457657,4.44521471421742,7.99584223859941,0,25.7077941578634,25.6001353852078,21.8461211200735,6.69650609179052,8.5946887897618,5.75876118371178,12.9410927366823,12.294818729252,12.1377588257788,23.4168081434574,21.3905324873176,15.4179271815813,19.559783608701,17.6600376668162,14.9386604259441,21.970578595394,21.2779360870551,21.5628846547457,9.56360854529097,12.3311564141929,11.7632829699862,15.6928255981928,12.8940047972441,17.0171790451556,42.0818238587963,50.7831340101152,43.7343668419264,22.7025836486319,21.3430751066673,16.6481447697059,17.7995945262055,12.7886420690298,15.8788058574755,18.0582603501131,21.1526809109294,19.4408551197635,25.0286704008145,59.1297537715873,55.438003778855,21.435889862617,17.6355666673555,18.3843757322004,48.450987639731,52.7348706291825,47.6180253094355,42.0717257859318,43.548118354747,42.1939830150976,51.3696718162541,45.0210088025344,46.4506673241503,53.6224025562075,45.8436812173111,43.0582719856444,98.5955037198056,58.1901012822249,21.1601076752225,48.1837371109576,51.677821361789,31.3027851149934,29.2399387851451,23.2973981290615,29.0719949672726,13.9752864514007,22.6013824004496,14.1335829804136,31.8306128695298,12.8326477414318,40.7688383530633,14.2213340630666,38.1024232179737,38.0039798212648,34.88118670602,36.8813931492564,11.1343289968284,17.0708459924548,10.7560902595004,14.3098774806706,18.2186242832286,20.6490017557093,15.0513545133702,16.2109902815281,39.7983898052342,11.2787498397531,8.84610551949874,11.6472131962135,6.8460870722722,7.75800405016355,35.4144346314432,31.3275452802355,40.0043210013699,62.5869785261049,6.70964697233154,4.19931911695385,6.4805815807263,43.4392854273986,64.0500843946077,30.6596619155389,70.5726739980642,80.2946536017238,46.9600980704606,50.1325502879371,14.5630290305952,10.3257785606377,16.4269792981889,20.2024181651015,9.75903322220278,17.4725599369439,14.945156773844,16.1254155084215,16.2607232971674,14.8611915530426,12.8371362646828,18.3679393224701,10.3472636607764,11.7245769704048,11.0849208223288,14.2477226077924,12.2340789659263,18.4573648256748,23.2533814140976,13.335295876839,7.02213187313235,3.60287069960601,7.38825098428541,11.8061690345236,13.3679854189225,14.0448407939592,13.9679393995274,12.3961466000864,10.6444307892291,15.1147064087765,13.413670069981,13.1944836874902,16.1268652915211,14.1184019108022,11.8360461936949,12.7193989060039,13.173006917463,14.7627060636409,46.263788684108,22.8448239482011,143.401751814968,57.1213223993256,11.5175655289026,16.953277045812,23.5827454219431,28.235693447268,32.0224383136613,42.2300889969881,51.2491386468073,41.5041365904507,48.507695298452,43.3725109049709,48.5460576926609,53.9291645192533,63.1123105634107,64.521772534415,15.7424357791058,13.0243304375091,21.4144697778853,19.7541788009955,21.9166310499417,21.7421041659988,27.5078936490519,36.4597065509617,36.7377023148817,42.3252272251776,28.4594522003663,8.17541018008861,11.2038627214526,7.42044970870017,11.1573066763677,14.2294524253926,21.8978232532021,30.2080944323351,12.8086829152278,27.7307027319962,38.8174157623857,28.6548529704748,32.1398803307997,26.7733610623938,28.8829835770279,32.806159452709,14.4107488329952,11.7484675297701,10.4297584922897,10.0149600607361,11.7345124144251,11.2229192486017,15.2347930167049,12.0982861671835,11.9802709520705,9.52298165489732,12.437471955284,14.5838350097007,14.1601685130034,13.8863096238251,7.53956419696361,10.3342079925555,42.7834917526562,27.869611376778,56.9954594456661,48.2912148759877,11.8033160671206,15.4007265594668,19.2460013843917,23.0358859135017,21.1114929778143,10.5146271099123,18.2694912747563,12.7384438854975,17.0020494703456,19.2888866221466,19.3691011193797,38.5585579706168,13.9101283504103,13.5329858787114,13.3567306669932,12.0428189769951,23.8941249011933,15.2951800777638,19.9533547596736,19.8035333743693,20.9664343945349,19.3684143204674,27.6518273689997,26.9014959813354,16.7553767840819,14.2216541071117,29.5172104009997,21.6584640821192,8.5109901438447,16.7456817449118,15.264324686365,14.3605813471167,16.3153014950892,19.9773075714319,20.2395295340609,15.22324745573,27.6912615515178,26.0553447162499,24.6991805821557,32.1528193235886,19.2142667768128,22.2554692984895,26.5006603686963,38.9013932395795,48.6772997171851,48.5814291267535,6.66396435111626,9.70018279427146,6.11141940320049,4.33247451110789,5.05768642567793,3.43167259809784,16.1479508494163,12.0358248998346,15.0637971446822,26.7307773044232,12.811607740036,14.8423211002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| |||
|short_description=p1@Ndfip2 | |||
}} |
Revision as of 22:51, 3 August 2015
Short description: | p1@Ndfip2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ndfip2_5end |
Coexpression cluster: | MCL_coexpression_mm9:240 |
Association with transcript: | 0bp_to_ENSMUST00000138283_5end |
EntrezGene: | 76273 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 5.80e-09 | 70 |
epithelial cell | 2.25e-07 | 25 |
CNS neuron (sensu Vertebrata) | 6.56e-07 | 23 |
neuroblast (sensu Vertebrata) | 6.56e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.65e-12 | 75 |
ectoderm-derived structure | 1.76e-12 | 95 |
ectoderm | 1.76e-12 | 95 |
presumptive ectoderm | 1.76e-12 | 95 |
regional part of nervous system | 1.45e-11 | 54 |
intestine | 1.57e-11 | 31 |
central nervous system | 1.60e-11 | 73 |
gray matter | 4.26e-11 | 34 |
neural tube | 9.19e-11 | 52 |
neural rod | 9.19e-11 | 52 |
future spinal cord | 9.19e-11 | 52 |
neural keel | 9.19e-11 | 52 |
ecto-epithelium | 7.34e-10 | 73 |
organ system subdivision | 2.94e-09 | 194 |
brain grey matter | 5.51e-09 | 29 |
regional part of telencephalon | 5.51e-09 | 29 |
telencephalon | 5.51e-09 | 29 |
brain | 1.12e-08 | 47 |
future brain | 1.12e-08 | 47 |
mucosa | 1.49e-08 | 15 |
regional part of brain | 2.07e-08 | 46 |
neurectoderm | 2.31e-08 | 64 |
neural plate | 2.31e-08 | 64 |
presumptive neural plate | 2.31e-08 | 64 |
anterior neural tube | 2.11e-07 | 40 |
intestinal mucosa | 2.50e-07 | 13 |
wall of intestine | 2.50e-07 | 13 |
gastrointestinal system mucosa | 2.50e-07 | 13 |
occipital lobe | 2.84e-07 | 10 |
visual cortex | 2.84e-07 | 10 |
neocortex | 2.84e-07 | 10 |
regional part of forebrain | 4.34e-07 | 39 |
forebrain | 4.34e-07 | 39 |
future forebrain | 4.34e-07 | 39 |