FFCP PHASE1:Mm9::chr10:13686815..13686846,+: Difference between revisions
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{{FFCP|EntrezGene=15273|HGNC=|MCL_coexpression_id=279|UniProt=|association_with_transcript=0bp_to_uc011xak.1_5end|description=CAGE_peak_3_at_Hivep2_5end|id=chr10:13686815..13686846,+|ontology_enrichment_celltype=CL:0000393!2.64e-11!39;CL:0000211!2.64e-11!39;CL:0000055!6.21e-09!50;CL:0000540!9.27e-09!33;CL:0000047!9.27e-09!33;CL:0000031!9.27e-09!33;CL:0000404!9.27e-09!33;CL:0002321!4.11e-08!70;CL:0000220!4.11e-08!70;CL:0000221!1.45e-07!44;CL:0000133!1.45e-07!44;CL:0002319!2.27e-07!43|ontology_enrichment_celltype_v019_2=CL:0000393,7.41e-12,39;CL:0000211,7.41e-12,39;CL:0000540,4.17e-09,33;CL:0000047,4.17e-09,33;CL:0000031,4.17e-09,33;CL:0000404,4.17e-09,33;CL:0002321,5.40e-09,70;CL:0000221,1.74e-07,44;CL:0000133,1.74e-07,44;CL:0002319,2.81e-07,43;CL:0000791,9.76e-07,9;CL:0000789,9.76e-07,9;CL:0002420,9.76e-07,9;CL:0002419,9.76e-07,9;CL:0000790,9.76e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!7.76e-16!75;UBERON:0001016!7.76e-16!75;UBERON:0001017!2.01e-15!73;UBERON:0005743!2.01e-15!73;UBERON:0000955!4.88e-12!50;UBERON:0006238!4.88e-12!50;UBERON:0002616!1.75e-11!49;UBERON:0004121!2.15e-11!102;UBERON:0000924!2.15e-11!102;UBERON:0006601!2.15e-11!102;UBERON:0002020!2.31e-11!34;UBERON:0001049!3.40e-11!52;UBERON:0005068!3.40e-11!52;UBERON:0006241!3.40e-11!52;UBERON:0007135!3.40e-11!52;UBERON:0002791!1.04e-10!29;UBERON:0003528!1.04e-10!29;UBERON:0001893!1.04e-10!29;UBERON:0000956!6.51e-10!21;UBERON:0001869!6.51e-10!21;UBERON:0000203!6.51e-10!21;UBERON:0003080!4.20e-09!40;UBERON:0000033!8.19e-09!63;UBERON:0002780!8.93e-09!39;UBERON:0001890!8.93e-09!39;UBERON:0006240!8.93e-09!39;UBERON:0002346!3.22e-08!71;UBERON:0003075!3.22e-08!71;UBERON:0007284!3.22e-08!71;UBERON:0007811!3.97e-08!86;UBERON:0002021!7.89e-08!10;UBERON:0000411!7.89e-08!10;UBERON:0001950!7.89e-08!10;UBERON:0000064!9.35e-08!99;UBERON:0002619!1.16e-07!17;UBERON:0000153!1.44e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.91e-16,75;UBERON:0001017,5.35e-16,73;UBERON:0000073,7.46e-13,54;UBERON:0004121,2.94e-12,95;UBERON:0000924,2.94e-12,95;UBERON:0006601,2.94e-12,95;UBERON:0002020,6.71e-12,34;UBERON:0001049,1.24e-11,52;UBERON:0005068,1.24e-11,52;UBERON:0006241,1.24e-11,52;UBERON:0007135,1.24e-11,52;UBERON:0003528,1.63e-11,29;UBERON:0002791,1.63e-11,29;UBERON:0001893,1.63e-11,29;UBERON:0000955,2.42e-11,47;UBERON:0006238,2.42e-11,47;UBERON:0000956,4.52e-11,21;UBERON:0001869,4.52e-11,21;UBERON:0000203,4.52e-11,21;UBERON:0002616,9.18e-11,46;UBERON:0003080,7.43e-10,40;UBERON:0010371,1.53e-09,73;UBERON:0002780,1.69e-09,39;UBERON:0001890,1.69e-09,39;UBERON:0006240,1.69e-09,39;UBERON:0002346,2.04e-09,64;UBERON:0003075,2.04e-09,64;UBERON:0007284,2.04e-09,64;UBERON:0002619,1.34e-08,17;UBERON:0002021,2.14e-08,10;UBERON:0000411,2.14e-08,10;UBERON:0001950,2.14e-08,10|phase1_expression=1.28119077683835,2.44282785347553,3.18499467572675,1.20985684522732,2.00358291978539,3.69334398206158,2.80335168714631,14.332688902015,4.646027831005,96.2005203183393,5.82141091966717,39.6467630206822,4.28001824828014,7.60557501045277,0.999329285446988,0.607425802169478,0,5.20512572841092,7.26706498110415,4.2438965179803,5.69790044012167,0,0,2.55987876469451,1.83527424853736,2.29692785646008,0.86152399231815,0.646413698057667,0.380046838912748,0.504060259519861,1.33038306393183,0,0,0,0.577703239502549,0.166234645358492,0.204169356262369,0,0,0,0.588231488031014,0,0,11.2048167998264,12.0638548151222,6.42413632565885,0.782391344348039,1.74420125104357,1.5378032791413,2.13872888981712,1.25987779462826,0,10.0669563634642,11.6057942721815,3.6970317905671,3.8588915405392,2.86533439938757,2.57836046138721,1.61853168687678,1.05798195854407,2.53532561402472,1.0165335962074,0,0,0.988866362566974,1.4209602298922,0.898800331555214,0.768436610643109,7.56934169851887,10.2604513132085,8.62332341540666,0.856952953211411,3.3130281142742,3.79721477566358,2.49198224647415,0,4.40463523997555,5.49055553766307,6.29786786350598,0.923204014111357,1.37231465403614,2.6045668527838,3.90856198601933,2.8138130501584,5.04234217663473,4.12480019663135,3.55929201997757,1.67759501242771,1.8931548333296,2.56943304363071,1.73918693221007,0,8.15965600449301,0,0,0.448026887097336,1.96622188184453,0.852151612890289,1.03914401841148,0,2.39433813620357,1.28326477414318,5.09610479413291,0,1.08245520505607,2.02687892380079,2.02209778005913,2.2836775943812,3.6251303710604,2.52351636410202,0.520455980298408,0.608930956624282,1.15307748628029,1.20578112442098,0.940709657085638,0.502666365318702,0.247194967734374,3.90418263683761,0,2.42650274921114,1.32504911076236,1.93950101254089,0,4.9772735491963,3.97948742945565,0.510914110417183,0.11981512450592,0.599902730993408,0.889491589511453,3.14560342750128,9.15001205637253,1.00523481690292,12.3415267336516,12.7857728665165,2.49345653471472,6.32740925964255,1.01839363850316,1.49288364732112,0.758168275301024,0.841767423545896,0.390361328888111,0.689706313300419,1.0803727788321,0.60281927134286,1.02054748726992,1.0249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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:15273 | |||
|HGNC= | |||
|MCL_coexpression_id=279 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc011xak.1_5end | |||
|cluster_id=chr10:13686815..13686846,+ | |||
|description=CAGE_peak_3_at_Hivep2_5end | |||
|id=chr10:13686815..13686846,+ | |||
|ontology_enrichment_celltype=CL:0000393!2.64e-11!39;CL:0000211!2.64e-11!39;CL:0000055!6.21e-09!50;CL:0000540!9.27e-09!33;CL:0000047!9.27e-09!33;CL:0000031!9.27e-09!33;CL:0000404!9.27e-09!33;CL:0002321!4.11e-08!70;CL:0000220!4.11e-08!70;CL:0000221!1.45e-07!44;CL:0000133!1.45e-07!44;CL:0002319!2.27e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,7.41e-12,39;CL:0000211,7.41e-12,39;CL:0000540,4.17e-09,33;CL:0000047,4.17e-09,33;CL:0000031,4.17e-09,33;CL:0000404,4.17e-09,33;CL:0002321,5.40e-09,70;CL:0000221,1.74e-07,44;CL:0000133,1.74e-07,44;CL:0002319,2.81e-07,43;CL:0000791,9.76e-07,9;CL:0000789,9.76e-07,9;CL:0002420,9.76e-07,9;CL:0002419,9.76e-07,9;CL:0000790,9.76e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!7.76e-16!75;UBERON:0001016!7.76e-16!75;UBERON:0001017!2.01e-15!73;UBERON:0005743!2.01e-15!73;UBERON:0000955!4.88e-12!50;UBERON:0006238!4.88e-12!50;UBERON:0002616!1.75e-11!49;UBERON:0004121!2.15e-11!102;UBERON:0000924!2.15e-11!102;UBERON:0006601!2.15e-11!102;UBERON:0002020!2.31e-11!34;UBERON:0001049!3.40e-11!52;UBERON:0005068!3.40e-11!52;UBERON:0006241!3.40e-11!52;UBERON:0007135!3.40e-11!52;UBERON:0002791!1.04e-10!29;UBERON:0003528!1.04e-10!29;UBERON:0001893!1.04e-10!29;UBERON:0000956!6.51e-10!21;UBERON:0001869!6.51e-10!21;UBERON:0000203!6.51e-10!21;UBERON:0003080!4.20e-09!40;UBERON:0000033!8.19e-09!63;UBERON:0002780!8.93e-09!39;UBERON:0001890!8.93e-09!39;UBERON:0006240!8.93e-09!39;UBERON:0002346!3.22e-08!71;UBERON:0003075!3.22e-08!71;UBERON:0007284!3.22e-08!71;UBERON:0007811!3.97e-08!86;UBERON:0002021!7.89e-08!10;UBERON:0000411!7.89e-08!10;UBERON:0001950!7.89e-08!10;UBERON:0000064!9.35e-08!99;UBERON:0002619!1.16e-07!17;UBERON:0000153!1.44e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.91e-16,75;UBERON:0001017,5.35e-16,73;UBERON:0000073,7.46e-13,54;UBERON:0004121,2.94e-12,95;UBERON:0000924,2.94e-12,95;UBERON:0006601,2.94e-12,95;UBERON:0002020,6.71e-12,34;UBERON:0001049,1.24e-11,52;UBERON:0005068,1.24e-11,52;UBERON:0006241,1.24e-11,52;UBERON:0007135,1.24e-11,52;UBERON:0003528,1.63e-11,29;UBERON:0002791,1.63e-11,29;UBERON:0001893,1.63e-11,29;UBERON:0000955,2.42e-11,47;UBERON:0006238,2.42e-11,47;UBERON:0000956,4.52e-11,21;UBERON:0001869,4.52e-11,21;UBERON:0000203,4.52e-11,21;UBERON:0002616,9.18e-11,46;UBERON:0003080,7.43e-10,40;UBERON:0010371,1.53e-09,73;UBERON:0002780,1.69e-09,39;UBERON:0001890,1.69e-09,39;UBERON:0006240,1.69e-09,39;UBERON:0002346,2.04e-09,64;UBERON:0003075,2.04e-09,64;UBERON:0007284,2.04e-09,64;UBERON:0002619,1.34e-08,17;UBERON:0002021,2.14e-08,10;UBERON:0000411,2.14e-08,10;UBERON:0001950,2.14e-08,10 | |||
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| |||
|short_description=p3@Hivep2 | |||
}} |
Revision as of 04:03, 4 August 2015
Short description: | p3@Hivep2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Hivep2_5end |
Coexpression cluster: | MCL_coexpression_mm9:279 |
Association with transcript: | 0bp_to_uc011xak.1_5end |
EntrezGene: | 15273 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 7.41e-12 | 39 |
electrically active cell | 7.41e-12 | 39 |
neuron | 4.17e-09 | 33 |
neuronal stem cell | 4.17e-09 | 33 |
neuroblast | 4.17e-09 | 33 |
electrically signaling cell | 4.17e-09 | 33 |
embryonic cell | 5.40e-09 | 70 |
ectodermal cell | 1.74e-07 | 44 |
neurectodermal cell | 1.74e-07 | 44 |
neural cell | 2.81e-07 | 43 |
mature alpha-beta T cell | 9.76e-07 | 9 |
alpha-beta T cell | 9.76e-07 | 9 |
immature T cell | 9.76e-07 | 9 |
mature T cell | 9.76e-07 | 9 |
immature alpha-beta T cell | 9.76e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.91e-16 | 75 |
central nervous system | 5.35e-16 | 73 |
regional part of nervous system | 7.46e-13 | 54 |
ectoderm-derived structure | 2.94e-12 | 95 |
ectoderm | 2.94e-12 | 95 |
presumptive ectoderm | 2.94e-12 | 95 |
gray matter | 6.71e-12 | 34 |
neural tube | 1.24e-11 | 52 |
neural rod | 1.24e-11 | 52 |
future spinal cord | 1.24e-11 | 52 |
neural keel | 1.24e-11 | 52 |
brain grey matter | 1.63e-11 | 29 |
regional part of telencephalon | 1.63e-11 | 29 |
telencephalon | 1.63e-11 | 29 |
brain | 2.42e-11 | 47 |
future brain | 2.42e-11 | 47 |
cerebral cortex | 4.52e-11 | 21 |
cerebral hemisphere | 4.52e-11 | 21 |
pallium | 4.52e-11 | 21 |
regional part of brain | 9.18e-11 | 46 |
anterior neural tube | 7.43e-10 | 40 |
ecto-epithelium | 1.53e-09 | 73 |
regional part of forebrain | 1.69e-09 | 39 |
forebrain | 1.69e-09 | 39 |
future forebrain | 1.69e-09 | 39 |
neurectoderm | 2.04e-09 | 64 |
neural plate | 2.04e-09 | 64 |
presumptive neural plate | 2.04e-09 | 64 |
regional part of cerebral cortex | 1.34e-08 | 17 |
occipital lobe | 2.14e-08 | 10 |
visual cortex | 2.14e-08 | 10 |
neocortex | 2.14e-08 | 10 |