FFCP PHASE1:Mm9::chr3:94114017..94114066,+: Difference between revisions
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{{FFCP|EntrezGene=75778|HGNC=|MCL_coexpression_id=60|UniProt=Q3UUI3,Q3USX4|association_with_transcript=0bp_to_ENSMUST00000142178,ENSMUST00000151753,NM_029431,uc008qfs.1,uc008qft.1,uc008qfu.1_5end|description=CAGE_peak_1_at_Them4_5end|id=chr3:94114017..94114066,+|ontology_enrichment_celltype=CL:0000117!2.87e-12!23;CL:0000337!2.87e-12!23;CL:0000540!2.74e-07!33;CL:0000047!2.74e-07!33;CL:0000031!2.74e-07!33;CL:0000404!2.74e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,2.31e-12,23;CL:0000337,2.31e-12,23;CL:0000540,4.01e-07,33;CL:0000047,4.01e-07,33;CL:0000031,4.01e-07,33;CL:0000404,4.01e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.83e-19!52;UBERON:0005068!1.83e-19!52;UBERON:0006241!1.83e-19!52;UBERON:0007135!1.83e-19!52;UBERON:0007811!2.06e-18!86;UBERON:0000955!2.90e-18!50;UBERON:0006238!2.90e-18!50;UBERON:0002616!1.19e-17!49;UBERON:0000033!6.66e-17!63;UBERON:0002020!1.50e-16!34;UBERON:0000153!3.15e-16!94;UBERON:0003080!6.74e-16!40;UBERON:0001017!1.28e-15!73;UBERON:0005743!1.28e-15!73;UBERON:0002780!2.12e-15!39;UBERON:0001890!2.12e-15!39;UBERON:0006240!2.12e-15!39;UBERON:0000073!4.76e-15!75;UBERON:0001016!4.76e-15!75;UBERON:0003056!6.72e-15!49;UBERON:0002346!7.31e-15!71;UBERON:0003075!7.31e-15!71;UBERON:0007284!7.31e-15!71;UBERON:0002791!8.22e-14!29;UBERON:0003528!8.22e-14!29;UBERON:0001893!8.22e-14!29;UBERON:0004121!3.21e-11!102;UBERON:0000924!3.21e-11!102;UBERON:0006601!3.21e-11!102;UBERON:0000956!7.17e-10!21;UBERON:0001869!7.17e-10!21;UBERON:0000203!7.17e-10!21;UBERON:0002619!4.60e-08!17;UBERON:0002021!6.40e-08!10;UBERON:0000411!6.40e-08!10;UBERON:0001950!6.40e-08!10;UBERON:0000064!8.17e-08!99|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.94e-20,54;UBERON:0001049,3.17e-19,52;UBERON:0005068,3.17e-19,52;UBERON:0006241,3.17e-19,52;UBERON:0007135,3.17e-19,52;UBERON:0010314,2.55e-17,92;UBERON:0000955,1.79e-16,47;UBERON:0006238,1.79e-16,47;UBERON:0002346,2.30e-16,64;UBERON:0003075,2.30e-16,64;UBERON:0007284,2.30e-16,64;UBERON:0002020,2.56e-16,34;UBERON:0002616,7.16e-16,46;UBERON:0003080,1.08e-15,40;UBERON:0001017,3.32e-15,73;UBERON:0002780,3.41e-15,39;UBERON:0001890,3.41e-15,39;UBERON:0006240,3.41e-15,39;UBERON:0003056,1.01e-14,49;UBERON:0001016,1.20e-14,75;UBERON:0003528,1.45e-13,29;UBERON:0002791,1.45e-13,29;UBERON:0001893,1.45e-13,29;UBERON:0010371,2.01e-13,73;UBERON:0004121,7.42e-12,95;UBERON:0000924,7.42e-12,95;UBERON:0006601,7.42e-12,95;UBERON:0000956,1.32e-09,21;UBERON:0001869,1.32e-09,21;UBERON:0000203,1.32e-09,21;UBERON:0002021,5.63e-08,10;UBERON:0000411,5.63e-08,10;UBERON:0001950,5.63e-08,10;UBERON:0002619,8.66e-08,17|phase1_expression=2.08193501236232,3.14077866875425,2.27499619694768,2.41971369045464,2.50447864973174,1.51091344720701,2.33612640595526,3.87369970324729,1.12630977721333,2.57470978954193,3.4243593645101,4.22792442675283,5.9920255475922,3.84649770643589,0.333109761815663,1.01237633694913,0.699561878128147,1.57731082679119,3.42786084014347,0.84877930359606,11.0556277196391,0.794327609607082,0,2.87986361028132,1.83527424853736,2.29692785646008,0.86152399231815,3.01659725760245,2.47030445293286,2.26827116783938,2.21730510655305,0,0,0,2.3108129580102,1.16364251750945,2.45003227514843,0.837063261473815,0,0.523523743973798,0.588231488031014,0,0,0.377690453926732,0.608261587317087,0.183546752161682,0.782391344348039,1.09012578190223,0.878744730937887,0.972149495371417,0.279972843250725,1.43752564364972,2.51673909086605,0.725362142011344,2.35265659399725,0.257259436035947,2.0057340795713,1.54701627683233,8.6996078169627,13.2247744818008,13.3104594736298,0,0,0,0,0,0.599200221036809,0.768436610643109,5.08079100311541,9.58542162155004,6.30974884054146,15.7108041422092,12.8103753751936,6.49201235839256,6.13411014516713,12.8690630125403,11.0115880999389,8.2996769755372,9.06278546211836,9.10015385338338,10.8870295886867,8.33461392890816,10.0505879640497,12.380777420697,7.02871939773326,10.606629077052,10.2507610175354,8.20157561631323,1.81742863999642,1.5870027622425,2.31891590961342,2.58127163094416,0,0.539703191637817,3.24888208723835,2.24013443548668,3.08977724289854,0.170430322578058,0,1.41335829804136,2.53518155598025,0,0,0,1.5154372870785,0.506719730950197,0,3.65388415100992,2.58937883647172,1.48442139064825,1.73485326766136,1.52232739156071,1.61430848079241,2.56228488939458,2.58695155698551,1.50799909595611,0.741584903203122,1.15679485535929,0.884610551949874,1.7794353494215,1.10420759230197,2.90925151881133,0,7.90508151931177,7.54008144528438,1.78819938646014,1.91704199209472,1.19980546198682,2.28726408731516,9.28701964309901,7.77751024791665,15.3298309577695,19.1206752211504,12.5300574091862,10.5971902725376,10.5456820994042,1.93494791315601,0.870848794270651,4.0435641349388,1.05220927943237,1.43132487258974,2.5289231487682,2.16074555766419,2.41127708537144,2.78949646520444,3.58718416797579,3.84177070694888,3.88055056108524,1.94011193639558,1.32374256117473,0.879755620819744,1.97276159184817,2.50242524303038,0.696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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:75778 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q3UUI3,uniprot:Q3USX4 | |||
|association_with_transcript=0bp_to_ENSMUST00000142178,ENSMUST00000151753,NM_029431,uc008qfs.1,uc008qft.1,uc008qfu.1_5end | |||
|cluster_id=chr3:94114017..94114066,+ | |||
|description=CAGE_peak_1_at_Them4_5end | |||
|id=chr3:94114017..94114066,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.87e-12!23;CL:0000337!2.87e-12!23;CL:0000540!2.74e-07!33;CL:0000047!2.74e-07!33;CL:0000031!2.74e-07!33;CL:0000404!2.74e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.31e-12,23;CL:0000337,2.31e-12,23;CL:0000540,4.01e-07,33;CL:0000047,4.01e-07,33;CL:0000031,4.01e-07,33;CL:0000404,4.01e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.83e-19!52;UBERON:0005068!1.83e-19!52;UBERON:0006241!1.83e-19!52;UBERON:0007135!1.83e-19!52;UBERON:0007811!2.06e-18!86;UBERON:0000955!2.90e-18!50;UBERON:0006238!2.90e-18!50;UBERON:0002616!1.19e-17!49;UBERON:0000033!6.66e-17!63;UBERON:0002020!1.50e-16!34;UBERON:0000153!3.15e-16!94;UBERON:0003080!6.74e-16!40;UBERON:0001017!1.28e-15!73;UBERON:0005743!1.28e-15!73;UBERON:0002780!2.12e-15!39;UBERON:0001890!2.12e-15!39;UBERON:0006240!2.12e-15!39;UBERON:0000073!4.76e-15!75;UBERON:0001016!4.76e-15!75;UBERON:0003056!6.72e-15!49;UBERON:0002346!7.31e-15!71;UBERON:0003075!7.31e-15!71;UBERON:0007284!7.31e-15!71;UBERON:0002791!8.22e-14!29;UBERON:0003528!8.22e-14!29;UBERON:0001893!8.22e-14!29;UBERON:0004121!3.21e-11!102;UBERON:0000924!3.21e-11!102;UBERON:0006601!3.21e-11!102;UBERON:0000956!7.17e-10!21;UBERON:0001869!7.17e-10!21;UBERON:0000203!7.17e-10!21;UBERON:0002619!4.60e-08!17;UBERON:0002021!6.40e-08!10;UBERON:0000411!6.40e-08!10;UBERON:0001950!6.40e-08!10;UBERON:0000064!8.17e-08!99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.94e-20,54;UBERON:0001049,3.17e-19,52;UBERON:0005068,3.17e-19,52;UBERON:0006241,3.17e-19,52;UBERON:0007135,3.17e-19,52;UBERON:0010314,2.55e-17,92;UBERON:0000955,1.79e-16,47;UBERON:0006238,1.79e-16,47;UBERON:0002346,2.30e-16,64;UBERON:0003075,2.30e-16,64;UBERON:0007284,2.30e-16,64;UBERON:0002020,2.56e-16,34;UBERON:0002616,7.16e-16,46;UBERON:0003080,1.08e-15,40;UBERON:0001017,3.32e-15,73;UBERON:0002780,3.41e-15,39;UBERON:0001890,3.41e-15,39;UBERON:0006240,3.41e-15,39;UBERON:0003056,1.01e-14,49;UBERON:0001016,1.20e-14,75;UBERON:0003528,1.45e-13,29;UBERON:0002791,1.45e-13,29;UBERON:0001893,1.45e-13,29;UBERON:0010371,2.01e-13,73;UBERON:0004121,7.42e-12,95;UBERON:0000924,7.42e-12,95;UBERON:0006601,7.42e-12,95;UBERON:0000956,1.32e-09,21;UBERON:0001869,1.32e-09,21;UBERON:0000203,1.32e-09,21;UBERON:0002021,5.63e-08,10;UBERON:0000411,5.63e-08,10;UBERON:0001950,5.63e-08,10;UBERON:0002619,8.66e-08,17 | |||
|phase1_expression=2.08193501236232,3.14077866875425,2.27499619694768,2.41971369045464,2.50447864973174,1.51091344720701,2.33612640595526,3.87369970324729,1.12630977721333,2.57470978954193,3.4243593645101,4.22792442675283,5.9920255475922,3.84649770643589,0.333109761815663,1.01237633694913,0.699561878128147,1.57731082679119,3.42786084014347,0.84877930359606,11.0556277196391,0.794327609607082,0,2.87986361028132,1.83527424853736,2.29692785646008,0.86152399231815,3.01659725760245,2.47030445293286,2.26827116783938,2.21730510655305,0,0,0,2.3108129580102,1.16364251750945,2.45003227514843,0.837063261473815,0,0.523523743973798,0.588231488031014,0,0,0.377690453926732,0.608261587317087,0.183546752161682,0.782391344348039,1.09012578190223,0.878744730937887,0.972149495371417,0.279972843250725,1.43752564364972,2.51673909086605,0.725362142011344,2.35265659399725,0.257259436035947,2.0057340795713,1.54701627683233,8.6996078169627,13.2247744818008,13.3104594736298,0,0,0,0,0,0.599200221036809,0.768436610643109,5.08079100311541,9.58542162155004,6.30974884054146,15.7108041422092,12.8103753751936,6.49201235839256,6.13411014516713,12.8690630125403,11.0115880999389,8.2996769755372,9.06278546211836,9.10015385338338,10.8870295886867,8.33461392890816,10.0505879640497,12.380777420697,7.02871939773326,10.606629077052,10.2507610175354,8.20157561631323,1.81742863999642,1.5870027622425,2.31891590961342,2.58127163094416,0,0.539703191637817,3.24888208723835,2.24013443548668,3.08977724289854,0.170430322578058,0,1.41335829804136,2.53518155598025,0,0,0,1.5154372870785,0.506719730950197,0,3.65388415100992,2.58937883647172,1.48442139064825,1.73485326766136,1.52232739156071,1.61430848079241,2.56228488939458,2.58695155698551,1.50799909595611,0.741584903203122,1.15679485535929,0.884610551949874,1.7794353494215,1.10420759230197,2.90925151881133,0,7.90508151931177,7.54008144528438,1.78819938646014,1.91704199209472,1.19980546198682,2.28726408731516,9.28701964309901,7.77751024791665,15.3298309577695,19.1206752211504,12.5300574091862,10.5971902725376,10.5456820994042,1.93494791315601,0.870848794270651,4.0435641349388,1.05220927943237,1.43132487258974,2.5289231487682,2.16074555766419,2.41127708537144,2.78949646520444,3.58718416797579,3.84177070694888,3.88055056108524,1.94011193639558,1.32374256117473,0.879755620819744,1.97276159184817,2.50242524303038,0.696504333044333,1.85203922767149,1.79130840136644,0.702213187313235,1.28673953557358,2.27330799516474,4.34964122324554,2.11073453982987,2.88099298337624,2.84093682702252,2.95146347621106,3.70241070929708,3.48800917125612,4.02410102099429,2.6856028744449,4.27855609775049,6.40253109908471,5.26947262048062,7.74859933354261,9.00155472693308,5.90508242545636,15.3511662451813,19.0373532901676,2.97376904685418,1.58670339998127,2.13288250535234,0.928946687441754,2.70621668776396,1.81515172161008,0.889512175379481,2.09248188723815,0.949058123089023,1.97638745668813,2.26201687920243,2.38747766449381,1.55971269695296,1.79763881730844,1.94524244887225,3.18626037206988,1.89667900953082,0.913988100877831,3.38123207019241,1.4255592949172,1.55161989734101,1.61312385747733,1.64414996523069,2.21415221969403,1.56998727841375,3.33172342588861,1.1858105083486,1.00107063429656,1.17935397067922,0.899448449539415,0.811440485554012,1.20588579876208,0.25462585178142,0.287696137450811,1.45921704097532,1.92192989231657,1.43768206527355,1.86070473834252,0.936113019343682,0.505157755894224,1.79397413521912,2.41221760681684,1.47802552133284,2.27389694124582,1.14075483509418,0.848725428875941,1.64283173801951,1.17254380209271,1.42826184531608,0.975668239288994,0.945810864637146,1.10732344824387,0.956728611944923,0.983179888294428,1.72684981865896,1.15719246865209,1.50791283939272,0.54390568381871,1.47529281905711,0.551873492609465,14.4495530989013,11.4867452860359,0.819674726883377,2.01976741763498,0.94652465824877,1.17131623288992,1.50796378412959,1.43381278771531,1.55959071857676,2.26461224631066,1.61924280669958,0.876767573733936,2.76701444562566,13.8168166061377,0.851640511249612,1.95872164033981,1.95464351224291,1.15479086080775,0,1.94224508923985,1.209294227859,0.943025398779491,0,2.76691633149535,1.55056975900933,1.09060118843252,0.356497378384721,0.632073515871632,1.05418608574999,0,3.74483566329167,2.16073312837572,1.68166288917581,1.92903331528433,3.3694644392032,9.45354733290974,10.2020392773315,7.00269382963578,3.05073220482823,1.27099242518292,0.661585194164886,2.14352128823924,1.77610869365496,1.5078231232039,1.79058516004705,1.31312719796049,0.291480836629851,10.5692422145991,0.854354403989263,1.65109494370578,1.66675074632741,0.376736914009382,0.683471138605126,1.14389086603261,1.35982743995084,1.39951452323658,1.38199973804424,1.90934123603023,1.10717597753397,2.23651413839534,2.37611749807963,1.88179466413022,1.09181281873089,1.21377911746339,1.48776220305605,1.57053565190418,2.46268449254406,1.86401793926078,62.5699161939451,2.0932316446157,3.30916980914195,1.16670713006429,2.32487682259916,1.520605129417,1.5256441023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| |||
|short_description=p1@Them4 | |||
}} |
Revision as of 07:26, 4 August 2015
Short description: | p1@Them4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Them4_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000142178, ENSMUST00000151753, NM_029431, uc008qfs.1, uc008qft.1, uc008qfu.1_5end |
EntrezGene: | 75778 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.31e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.31e-12 | 23 |
neuron | 4.01e-07 | 33 |
neuronal stem cell | 4.01e-07 | 33 |
neuroblast | 4.01e-07 | 33 |
electrically signaling cell | 4.01e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.94e-20 | 54 |
neural tube | 3.17e-19 | 52 |
neural rod | 3.17e-19 | 52 |
future spinal cord | 3.17e-19 | 52 |
neural keel | 3.17e-19 | 52 |
structure with developmental contribution from neural crest | 2.55e-17 | 92 |
brain | 1.79e-16 | 47 |
future brain | 1.79e-16 | 47 |
neurectoderm | 2.30e-16 | 64 |
neural plate | 2.30e-16 | 64 |
presumptive neural plate | 2.30e-16 | 64 |
gray matter | 2.56e-16 | 34 |
regional part of brain | 7.16e-16 | 46 |
anterior neural tube | 1.08e-15 | 40 |
central nervous system | 3.32e-15 | 73 |
regional part of forebrain | 3.41e-15 | 39 |
forebrain | 3.41e-15 | 39 |
future forebrain | 3.41e-15 | 39 |
pre-chordal neural plate | 1.01e-14 | 49 |
nervous system | 1.20e-14 | 75 |
brain grey matter | 1.45e-13 | 29 |
regional part of telencephalon | 1.45e-13 | 29 |
telencephalon | 1.45e-13 | 29 |
ecto-epithelium | 2.01e-13 | 73 |
ectoderm-derived structure | 7.42e-12 | 95 |
ectoderm | 7.42e-12 | 95 |
presumptive ectoderm | 7.42e-12 | 95 |
cerebral cortex | 1.32e-09 | 21 |
cerebral hemisphere | 1.32e-09 | 21 |
pallium | 1.32e-09 | 21 |
occipital lobe | 5.63e-08 | 10 |
visual cortex | 5.63e-08 | 10 |
neocortex | 5.63e-08 | 10 |
regional part of cerebral cortex | 8.66e-08 | 17 |