FFCP PHASE1:Mm9::chr19:60937293..60937365,-: Difference between revisions
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{{FFCP|EntrezGene=94281|HGNC=|MCL_coexpression_id=937|UniProt=F8WI63,D6RHK7,D3YZ14,Q925N1|association_with_transcript=0bp_to_ENSMUST00000080806,ENSMUST00000124921,NM_053198,uc008icc.2,uc012boi.1,uc012boj.1_5end|description=CAGE_peak_1_at_Sfxn4_5end|id=chr19:60937293..60937365,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.67e-19!63;UBERON:0002346!2.17e-19!71;UBERON:0003075!2.17e-19!71;UBERON:0007284!2.17e-19!71;UBERON:0001049!8.90e-17!52;UBERON:0005068!8.90e-17!52;UBERON:0006241!8.90e-17!52;UBERON:0007135!8.90e-17!52;UBERON:0000955!1.66e-16!50;UBERON:0006238!1.66e-16!50;UBERON:0002616!6.59e-16!49;UBERON:0003056!1.42e-15!49;UBERON:0000153!4.47e-15!94;UBERON:0001017!5.21e-15!73;UBERON:0005743!5.21e-15!73;UBERON:0000073!6.11e-14!75;UBERON:0001016!6.11e-14!75;UBERON:0004121!1.12e-13!102;UBERON:0000924!1.12e-13!102;UBERON:0006601!1.12e-13!102;UBERON:0007811!2.34e-13!86;UBERON:0003080!1.18e-12!40;UBERON:0002780!4.66e-12!39;UBERON:0001890!4.66e-12!39;UBERON:0006240!4.66e-12!39;UBERON:0002020!6.31e-10!34;UBERON:0000025!2.42e-08!114;UBERON:0004111!2.49e-08!122;UBERON:0002791!6.68e-08!29;UBERON:0003528!6.68e-08!29;UBERON:0001893!6.68e-08!29;UBERON:0002021!7.27e-07!10;UBERON:0000411!7.27e-07!10;UBERON:0001950!7.27e-07!10;UBERON:0000956!8.91e-07!21;UBERON:0001869!8.91e-07!21;UBERON:0000203!8.91e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.70e-22,92;UBERON:0002346,6.27e-20,64;UBERON:0003075,6.27e-20,64;UBERON:0007284,6.27e-20,64;UBERON:0000073,2.81e-18,54;UBERON:0001049,7.83e-17,52;UBERON:0005068,7.83e-17,52;UBERON:0006241,7.83e-17,52;UBERON:0007135,7.83e-17,52;UBERON:0010371,5.98e-16,73;UBERON:0003056,1.26e-15,49;UBERON:0001017,5.97e-15,73;UBERON:0000955,1.38e-14,47;UBERON:0006238,1.38e-14,47;UBERON:0002616,5.28e-14,46;UBERON:0001016,8.47e-14,75;UBERON:0004121,2.62e-13,95;UBERON:0000924,2.62e-13,95;UBERON:0006601,2.62e-13,95;UBERON:0003080,1.08e-12,40;UBERON:0002780,4.26e-12,39;UBERON:0001890,4.26e-12,39;UBERON:0006240,4.26e-12,39;UBERON:0002020,5.88e-10,34;UBERON:0000025,2.67e-08,114;UBERON:0004111,2.74e-08,122;UBERON:0003528,6.33e-08,29;UBERON:0002791,6.33e-08,29;UBERON:0001893,6.33e-08,29;UBERON:0002021,6.95e-07,10;UBERON:0000411,6.95e-07,10;UBERON:0001950,6.95e-07,10;UBERON:0000956,8.52e-07,21;UBERON:0001869,8.52e-07,21;UBERON:0000203,8.52e-07,21|phase1_expression=5.2849119544582,0,0,0,0,0,0,1.42035655785734,0.563154888606667,0.70219357896598,0.34243593645101,0,2.9104124088305,1.57356724354195,3.33109761815663,1.21485160433896,0,5.36285681109004,6.03303507865251,5.94145512517242,7.39876624314307,0.695036658406197,0.522399578277871,0.159992422793407,0.22940928106717,0,0,0,0.190023419456374,0.252030129759931,0.443461021310609,1.27006134691926,3.07532393792285,0,0,0,0,0.418531630736908,0,0.523523743973798,1.17646297606203,0.683045484958446,2.42755176515577,5.28766635497425,4.66333883609767,3.12029478674859,2.34717403304412,2.61630187656536,1.97717564461025,4.08302788055995,2.2397827460058,1.43752564364972,5.03347818173209,2.17608642603403,4.03312558970957,3.08711323243136,2.86533439938757,2.57836046138721,2.83243045203437,6.34789175126439,4.43681982454325,1.35537812827653,1.77858959222228,0.899899717281399,0.988866362566974,1.4209602298922,0.898800331555214,1.15265491596466,5.39185984004084,4.86021377994086,4.6271491497304,9.71213346972932,15.0190607847097,4.28717797252339,4.2172007248024,6.43453150627015,19.82085857989,21.4514727983115,23.962619187974,2.50583946687368,3.93396867490361,2.6045668527838,24.8472869111229,24.1987922313622,27.1980881042722,9.72274332063103,12.6710795911202,5.21918448310842,0.832988126665025,2.49386148352392,4.05810284182349,0,0,0,0,0.448026887097336,4.0728881838208,7.6693645160126,6.23486411046885,6.36011234118612,6.4787973097273,6.41632387071589,5.09610479413291,7.11066703153331,0.432982082022428,0.253359865475099,1.01104889002957,2.62622923353838,7.25026074212081,6.53145411885229,3.29622120855658,3.95805121805784,4.38169444786511,4.97384713823654,5.17390311397101,3.64433114856059,2.71914464507811,7.51916655983541,1.76922110389975,3.88240439873782,3.97514733228708,2.90925151881133,0,16.6885054296582,18.431310199584,1.02182822083437,2.87556298814209,1.79970819298022,2.28726408731516,17.0761328921498,19.2150253183823,4.90051973240171,14.7750672163435,8.95004100656157,20.3632283668369,17.5220564113178,5.49932564791708,3.4833951770826,3.79084137650512,5.26104639716185,5.33493816147085,5.51765050640335,6.84236093260327,7.83665052745718,6.80364991513279,7.81493693737584,7.40243624021858,12.1590584247337,5.82033580918674,5.29497024469894,7.38994721488585,5.91828477554452,5.28289773528636,3.83077383174383,6.1734640922383,6.56813080501028,1.40442637462647,2.31613116403244,3.40996199274711,5.79952163099405,5.62862543954631,5.04173772090842,5.68187365404505,6.68998387941173,4.31947916084659,4.18561100550734,4.02410102099429,5.3712057488898,6.41783414662574,7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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:94281 | |||
|HGNC= | |||
|MCL_coexpression_id=937 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:F8WI63,uniprot:D6RHK7,uniprot:D3YZ14,uniprot:Q925N1 | |||
|association_with_transcript=0bp_to_ENSMUST00000080806,ENSMUST00000124921,NM_053198,uc008icc.2,uc012boi.1,uc012boj.1_5end | |||
|cluster_id=chr19:60937293..60937365,- | |||
|description=CAGE_peak_1_at_Sfxn4_5end | |||
|id=chr19:60937293..60937365,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.67e-19!63;UBERON:0002346!2.17e-19!71;UBERON:0003075!2.17e-19!71;UBERON:0007284!2.17e-19!71;UBERON:0001049!8.90e-17!52;UBERON:0005068!8.90e-17!52;UBERON:0006241!8.90e-17!52;UBERON:0007135!8.90e-17!52;UBERON:0000955!1.66e-16!50;UBERON:0006238!1.66e-16!50;UBERON:0002616!6.59e-16!49;UBERON:0003056!1.42e-15!49;UBERON:0000153!4.47e-15!94;UBERON:0001017!5.21e-15!73;UBERON:0005743!5.21e-15!73;UBERON:0000073!6.11e-14!75;UBERON:0001016!6.11e-14!75;UBERON:0004121!1.12e-13!102;UBERON:0000924!1.12e-13!102;UBERON:0006601!1.12e-13!102;UBERON:0007811!2.34e-13!86;UBERON:0003080!1.18e-12!40;UBERON:0002780!4.66e-12!39;UBERON:0001890!4.66e-12!39;UBERON:0006240!4.66e-12!39;UBERON:0002020!6.31e-10!34;UBERON:0000025!2.42e-08!114;UBERON:0004111!2.49e-08!122;UBERON:0002791!6.68e-08!29;UBERON:0003528!6.68e-08!29;UBERON:0001893!6.68e-08!29;UBERON:0002021!7.27e-07!10;UBERON:0000411!7.27e-07!10;UBERON:0001950!7.27e-07!10;UBERON:0000956!8.91e-07!21;UBERON:0001869!8.91e-07!21;UBERON:0000203!8.91e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.70e-22,92;UBERON:0002346,6.27e-20,64;UBERON:0003075,6.27e-20,64;UBERON:0007284,6.27e-20,64;UBERON:0000073,2.81e-18,54;UBERON:0001049,7.83e-17,52;UBERON:0005068,7.83e-17,52;UBERON:0006241,7.83e-17,52;UBERON:0007135,7.83e-17,52;UBERON:0010371,5.98e-16,73;UBERON:0003056,1.26e-15,49;UBERON:0001017,5.97e-15,73;UBERON:0000955,1.38e-14,47;UBERON:0006238,1.38e-14,47;UBERON:0002616,5.28e-14,46;UBERON:0001016,8.47e-14,75;UBERON:0004121,2.62e-13,95;UBERON:0000924,2.62e-13,95;UBERON:0006601,2.62e-13,95;UBERON:0003080,1.08e-12,40;UBERON:0002780,4.26e-12,39;UBERON:0001890,4.26e-12,39;UBERON:0006240,4.26e-12,39;UBERON:0002020,5.88e-10,34;UBERON:0000025,2.67e-08,114;UBERON:0004111,2.74e-08,122;UBERON:0003528,6.33e-08,29;UBERON:0002791,6.33e-08,29;UBERON:0001893,6.33e-08,29;UBERON:0002021,6.95e-07,10;UBERON:0000411,6.95e-07,10;UBERON:0001950,6.95e-07,10;UBERON:0000956,8.52e-07,21;UBERON:0001869,8.52e-07,21;UBERON:0000203,8.52e-07,21 | |||
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| |||
|short_description=p1@Sfxn4 | |||
}} |
Revision as of 11:55, 4 August 2015
Short description: | p1@Sfxn4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sfxn4_5end |
Coexpression cluster: | MCL_coexpression_mm9:937 |
Association with transcript: | 0bp_to_ENSMUST00000080806, ENSMUST00000124921, NM_053198, uc008icc.2, uc012boi.1, uc012boj.1_5end |
EntrezGene: | 94281 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 1.70e-22 | 92 |
neurectoderm | 6.27e-20 | 64 |
neural plate | 6.27e-20 | 64 |
presumptive neural plate | 6.27e-20 | 64 |
regional part of nervous system | 2.81e-18 | 54 |
neural tube | 7.83e-17 | 52 |
neural rod | 7.83e-17 | 52 |
future spinal cord | 7.83e-17 | 52 |
neural keel | 7.83e-17 | 52 |
ecto-epithelium | 5.98e-16 | 73 |
pre-chordal neural plate | 1.26e-15 | 49 |
central nervous system | 5.97e-15 | 73 |
brain | 1.38e-14 | 47 |
future brain | 1.38e-14 | 47 |
regional part of brain | 5.28e-14 | 46 |
nervous system | 8.47e-14 | 75 |
ectoderm-derived structure | 2.62e-13 | 95 |
ectoderm | 2.62e-13 | 95 |
presumptive ectoderm | 2.62e-13 | 95 |
anterior neural tube | 1.08e-12 | 40 |
regional part of forebrain | 4.26e-12 | 39 |
forebrain | 4.26e-12 | 39 |
future forebrain | 4.26e-12 | 39 |
gray matter | 5.88e-10 | 34 |
tube | 2.67e-08 | 114 |
anatomical conduit | 2.74e-08 | 122 |
brain grey matter | 6.33e-08 | 29 |
regional part of telencephalon | 6.33e-08 | 29 |
telencephalon | 6.33e-08 | 29 |
occipital lobe | 6.95e-07 | 10 |
visual cortex | 6.95e-07 | 10 |
neocortex | 6.95e-07 | 10 |
cerebral cortex | 8.52e-07 | 21 |
cerebral hemisphere | 8.52e-07 | 21 |
pallium | 8.52e-07 | 21 |