FFCP PHASE1:Mm9::chr15:80003945..80003978,+: Difference between revisions
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{{FFCP|EntrezGene=17309|HGNC=|MCL_coexpression_id=13|UniProt=Q5RKT9|association_with_transcript=-172bp_to_ENSMUST00000044970,NM_010795,uc007wvf.1_5end|description=CAGE_peak_3_at_Mgat3_5end|id=chr15:80003945..80003978,+|ontology_enrichment_celltype=CL:0000221!3.79e-15!44;CL:0000133!3.79e-15!44;CL:0002319!6.76e-15!43;CL:0000117!9.14e-15!23;CL:0000337!9.14e-15!23;CL:0000540!9.29e-15!33;CL:0000047!9.29e-15!33;CL:0000031!9.29e-15!33;CL:0000404!9.29e-15!33;CL:0000393!1.24e-12!39;CL:0000211!1.24e-12!39;CL:0000055!2.19e-12!50;CL:0002321!1.79e-08!70;CL:0000220!1.79e-08!70|ontology_enrichment_celltype_v019_2=CL:0000117,2.44e-17,23;CL:0000337,2.44e-17,23;CL:0000540,1.34e-16,33;CL:0000047,1.34e-16,33;CL:0000031,1.34e-16,33;CL:0000404,1.34e-16,33;CL:0000221,4.28e-16,44;CL:0000133,4.28e-16,44;CL:0002319,8.55e-16,43;CL:0000393,2.84e-13,39;CL:0000211,2.84e-13,39;CL:0002321,3.99e-09,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.98e-27!73;UBERON:0005743!4.98e-27!73;UBERON:0000073!1.49e-26!75;UBERON:0001016!1.49e-26!75;UBERON:0004121!4.06e-21!102;UBERON:0000924!4.06e-21!102;UBERON:0006601!4.06e-21!102;UBERON:0002346!3.29e-20!71;UBERON:0003075!3.29e-20!71;UBERON:0007284!3.29e-20!71;UBERON:0001049!1.44e-19!52;UBERON:0005068!1.44e-19!52;UBERON:0006241!1.44e-19!52;UBERON:0007135!1.44e-19!52;UBERON:0000033!9.44e-19!63;UBERON:0000955!5.25e-18!50;UBERON:0006238!5.25e-18!50;UBERON:0002616!1.96e-17!49;UBERON:0003056!1.44e-14!49;UBERON:0002020!2.11e-13!34;UBERON:0000153!4.46e-13!94;UBERON:0003080!5.23e-13!40;UBERON:0002780!1.94e-12!39;UBERON:0001890!1.94e-12!39;UBERON:0006240!1.94e-12!39;UBERON:0007811!2.05e-12!86;UBERON:0002791!3.66e-10!29;UBERON:0003528!3.66e-10!29;UBERON:0001893!3.66e-10!29;UBERON:0000468!5.98e-08!333;UBERON:0003076!1.35e-07!12;UBERON:0003057!1.35e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.01e-30,73;UBERON:0001016,5.80e-29,75;UBERON:0004121,1.18e-24,95;UBERON:0000924,1.18e-24,95;UBERON:0006601,1.18e-24,95;UBERON:0002346,1.52e-24,64;UBERON:0003075,1.52e-24,64;UBERON:0007284,1.52e-24,64;UBERON:0000073,6.63e-24,54;UBERON:0001049,2.89e-22,52;UBERON:0005068,2.89e-22,52;UBERON:0006241,2.89e-22,52;UBERON:0007135,2.89e-22,52;UBERON:0010371,2.93e-20,73;UBERON:0000955,4.02e-18,47;UBERON:0006238,4.02e-18,47;UBERON:0002616,1.82e-17,46;UBERON:0003056,4.48e-16,49;UBERON:0002020,4.67e-15,34;UBERON:0003080,1.65e-14,40;UBERON:0002780,7.71e-14,39;UBERON:0001890,7.71e-14,39;UBERON:0006240,7.71e-14,39;UBERON:0010314,1.96e-13,92;UBERON:0003528,3.05e-11,29;UBERON:0002791,3.05e-11,29;UBERON:0001893,3.05e-11,29;UBERON:0003076,8.90e-09,12;UBERON:0003057,8.90e-09,12;UBERON:0000956,4.16e-07,21;UBERON:0001869,4.16e-07,21;UBERON:0000203,4.16e-07,21;UBERON:0011216,6.30e-07,194|phase1_expression=1.76163731815273,0,0.454999239389536,0.60492842261366,0,0.33575854382378,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935476191661768,0,0,0.319984845586813,0.22940928106717,0,0,0,0,0.504060259519861,0,0,0,0,0.288851619751275,0.332469290716985,0.204169356262369,0,0,0,0,0,0,0.629484089877886,0.912392380975631,1.28482726513177,1.56478268869608,1.09012578190223,0.439372365468944,1.1665793944457,0.979904951377538,2.87505128729943,0,0,0,0.771778308107841,1.14613375975503,0,4.45096213891115,7.93486468908049,12.0427966666174,2.03306719241479,2.66788438833342,0,0,0.7104801149461,5.09320187881288,3.84218305321555,3.42175720617976,3.91517221161903,2.73422449756797,10.8547374073445,10.1599528837742,3.55223317723367,3.1629005436018,6.43453150627015,7.70811166995721,7.53355294702608,5.68344173048101,4.74790635828698,4.29991924931325,3.12548022334056,6.42120897703176,4.50210088025344,5.34793867218835,9.42811473515737,9.39653093274079,8.01517617048792,0.530083353332288,1.13357340160178,0.289864488701678,0,0,0,0,0,0.842666520790511,0.681721290312231,0.519572009205738,0,1.83096445709685,0,15.2883143823987,7.11066703153331,4.11332977921307,3.80039798212648,3.0331466700887,0.5709193985953,0,1.1875371125186,1.90833859442749,0.304465478312141,0.461230994512117,0.904335843315735,0.705532242814229,0.628332956648377,0,0,0,0,0,0,3.72783522436244,7.61230072230023,10.8912287542997,0.766371165625774,0,0,0,4.94309110035915,1.83000241127451,1.7591609295801,2.9550134432687,1.53429274398198,3.53239675751252,3.89379031362618,1.83310854930569,0.124406970610093,0.505445516867349,1.68353484709179,1.56144531555244,2.98872735763515,1.98068342785884,2.71268672104287,1.08858398642125,0.640568601424249,1.68663104207512,2.32833033665114,3.66465587985832,4.34943984385984,3.34307135911503,2.84954452155847,1.11218899690239,0.696504333044333,0.205782136407943,1.59227413454795,0,0,0,1.65700618028402,0.234526059981096,0.540186184383045,0.710234206755631,0.393528463494808,0.462801338662135,0,0,0.583826711835847,0,0.492502392237286,0.243206428637567,0.146199987425332,0,0,2.3131894342054,1.54356918568927,0,0,3.83918850963421,2.09013004674395,2.19074684247559,1.00841762311671,1.33426826306922,0.951128130562796,0.47452906154451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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:17309 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q5RKT9 | |||
|association_with_transcript=-172bp_to_ENSMUST00000044970,NM_010795,uc007wvf.1_5end | |||
|cluster_id=chr15:80003945..80003978,+ | |||
|description=CAGE_peak_3_at_Mgat3_5end | |||
|id=chr15:80003945..80003978,+ | |||
|ontology_enrichment_celltype=CL:0000221!3.79e-15!44;CL:0000133!3.79e-15!44;CL:0002319!6.76e-15!43;CL:0000117!9.14e-15!23;CL:0000337!9.14e-15!23;CL:0000540!9.29e-15!33;CL:0000047!9.29e-15!33;CL:0000031!9.29e-15!33;CL:0000404!9.29e-15!33;CL:0000393!1.24e-12!39;CL:0000211!1.24e-12!39;CL:0000055!2.19e-12!50;CL:0002321!1.79e-08!70;CL:0000220!1.79e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.44e-17,23;CL:0000337,2.44e-17,23;CL:0000540,1.34e-16,33;CL:0000047,1.34e-16,33;CL:0000031,1.34e-16,33;CL:0000404,1.34e-16,33;CL:0000221,4.28e-16,44;CL:0000133,4.28e-16,44;CL:0002319,8.55e-16,43;CL:0000393,2.84e-13,39;CL:0000211,2.84e-13,39;CL:0002321,3.99e-09,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.98e-27!73;UBERON:0005743!4.98e-27!73;UBERON:0000073!1.49e-26!75;UBERON:0001016!1.49e-26!75;UBERON:0004121!4.06e-21!102;UBERON:0000924!4.06e-21!102;UBERON:0006601!4.06e-21!102;UBERON:0002346!3.29e-20!71;UBERON:0003075!3.29e-20!71;UBERON:0007284!3.29e-20!71;UBERON:0001049!1.44e-19!52;UBERON:0005068!1.44e-19!52;UBERON:0006241!1.44e-19!52;UBERON:0007135!1.44e-19!52;UBERON:0000033!9.44e-19!63;UBERON:0000955!5.25e-18!50;UBERON:0006238!5.25e-18!50;UBERON:0002616!1.96e-17!49;UBERON:0003056!1.44e-14!49;UBERON:0002020!2.11e-13!34;UBERON:0000153!4.46e-13!94;UBERON:0003080!5.23e-13!40;UBERON:0002780!1.94e-12!39;UBERON:0001890!1.94e-12!39;UBERON:0006240!1.94e-12!39;UBERON:0007811!2.05e-12!86;UBERON:0002791!3.66e-10!29;UBERON:0003528!3.66e-10!29;UBERON:0001893!3.66e-10!29;UBERON:0000468!5.98e-08!333;UBERON:0003076!1.35e-07!12;UBERON:0003057!1.35e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.01e-30,73;UBERON:0001016,5.80e-29,75;UBERON:0004121,1.18e-24,95;UBERON:0000924,1.18e-24,95;UBERON:0006601,1.18e-24,95;UBERON:0002346,1.52e-24,64;UBERON:0003075,1.52e-24,64;UBERON:0007284,1.52e-24,64;UBERON:0000073,6.63e-24,54;UBERON:0001049,2.89e-22,52;UBERON:0005068,2.89e-22,52;UBERON:0006241,2.89e-22,52;UBERON:0007135,2.89e-22,52;UBERON:0010371,2.93e-20,73;UBERON:0000955,4.02e-18,47;UBERON:0006238,4.02e-18,47;UBERON:0002616,1.82e-17,46;UBERON:0003056,4.48e-16,49;UBERON:0002020,4.67e-15,34;UBERON:0003080,1.65e-14,40;UBERON:0002780,7.71e-14,39;UBERON:0001890,7.71e-14,39;UBERON:0006240,7.71e-14,39;UBERON:0010314,1.96e-13,92;UBERON:0003528,3.05e-11,29;UBERON:0002791,3.05e-11,29;UBERON:0001893,3.05e-11,29;UBERON:0003076,8.90e-09,12;UBERON:0003057,8.90e-09,12;UBERON:0000956,4.16e-07,21;UBERON:0001869,4.16e-07,21;UBERON:0000203,4.16e-07,21;UBERON:0011216,6.30e-07,194 | |||
|phase1_expression=1.76163731815273,0,0.454999239389536,0.60492842261366,0,0.33575854382378,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935476191661768,0,0,0.319984845586813,0.22940928106717,0,0,0,0,0.504060259519861,0,0,0,0,0.288851619751275,0.332469290716985,0.204169356262369,0,0,0,0,0,0,0.629484089877886,0.912392380975631,1.28482726513177,1.56478268869608,1.09012578190223,0.439372365468944,1.1665793944457,0.979904951377538,2.87505128729943,0,0,0,0.771778308107841,1.14613375975503,0,4.45096213891115,7.93486468908049,12.0427966666174,2.03306719241479,2.66788438833342,0,0,0.7104801149461,5.09320187881288,3.84218305321555,3.42175720617976,3.91517221161903,2.73422449756797,10.8547374073445,10.1599528837742,3.55223317723367,3.1629005436018,6.43453150627015,7.70811166995721,7.53355294702608,5.68344173048101,4.74790635828698,4.29991924931325,3.12548022334056,6.42120897703176,4.50210088025344,5.34793867218835,9.42811473515737,9.39653093274079,8.01517617048792,0.530083353332288,1.13357340160178,0.289864488701678,0,0,0,0,0,0.842666520790511,0.681721290312231,0.519572009205738,0,1.83096445709685,0,15.2883143823987,7.11066703153331,4.11332977921307,3.80039798212648,3.0331466700887,0.5709193985953,0,1.1875371125186,1.90833859442749,0.304465478312141,0.461230994512117,0.904335843315735,0.705532242814229,0.628332956648377,0,0,0,0,0,0,3.72783522436244,7.61230072230023,10.8912287542997,0.766371165625774,0,0,0,4.94309110035915,1.83000241127451,1.7591609295801,2.9550134432687,1.53429274398198,3.53239675751252,3.89379031362618,1.83310854930569,0.124406970610093,0.505445516867349,1.68353484709179,1.56144531555244,2.98872735763515,1.98068342785884,2.71268672104287,1.08858398642125,0.640568601424249,1.68663104207512,2.32833033665114,3.66465587985832,4.34943984385984,3.34307135911503,2.84954452155847,1.11218899690239,0.696504333044333,0.205782136407943,1.59227413454795,0,0,0,1.65700618028402,0.234526059981096,0.540186184383045,0.710234206755631,0.393528463494808,0.462801338662135,0,0,0.583826711835847,0,0.492502392237286,0.243206428637567,0.146199987425332,0,0,2.3131894342054,1.54356918568927,0,0,3.83918850963421,2.09013004674395,2.19074684247559,1.00841762311671,1.33426826306922,0.951128130562796,0.474529061544512,0.164698954724011,0.502670417600539,0.596869416123452,0.19496408711912,0,0.648414149624083,0.398282546508734,1.89667900953082,1.37098215131675,0,2.03651327845314,0.969762435838129,1.05203729835478,0.948548056863859,0.885660887877613,0.784993639206874,0.493588655687202,0,0.500535317148282,0.982794975566015,0.674586337154561,0.202860121388503,0,0.25462585178142,0,0.162135226775035,0,0,0,0,0.252578877947112,0,0,0.554259570499814,1.70542270593436,2.28150967018836,2.03694102930226,1.40814148973101,1.34005005953453,0.952174563544055,1.17080188714679,1.26108115284953,1.10732344824387,0.797273843287435,0,1.03610989119537,0.578596234326046,0,0,0,0.827810238914197,4.49541651965817,4.45404409050372,0.655739781506702,0,1.26203287766503,1.17131623288992,3.01592756825919,1.67278158566786,2.00518806674155,2.54768877709949,0.809621403349789,1.75353514746787,0.395287777946524,4.17717711348349,0.425820255624806,1.6025904330053,1.95464351224291,0.989820737835213,0,0.971122544619926,1.209294227859,0.377210159511796,0.590603785761546,0.922305443831782,0.258428293168221,0,0,0,0,0,0.340439605753788,1.8006109403131,2.19909762430683,1.50035924522115,2.12808280370728,3.0322698992352,1.97458824722545,1.8267896946876,1.40803024838226,0.21183207086382,0.220528398054962,0,0.322928853391811,0.120625849856312,0.119372344003136,0,0.874442509889552,5.19190845629427,0.170870880797853,1.03193433981611,0.185194527369712,0.188368457004691,0.136694227721025,0.228778173206523,0,0,0,0.954670618015114,3.79603192297362,1.82987520414164,1.18805874903981,1.88179466413022,1.31017538247707,0.944050424693745,1.48776220305605,1.04702376793612,0.777689839750757,0,0,1.79419855252775,1.65458490457098,1.75006069509643,1.54991788173277,1.01373675294467,1.29092962510329,0.651021924219751,0.943734099831398,0.241584120826006,0,1.58005560314089,1.62180172232131,1.1298205288131,0.77952493786677,0.716106782669926,1.19208812868759,0.721172697119813,0.738447635872886,0.201932899896295,0.381034033274999,0.302478555410522,0.877120926657772,0.384847366561318,0.233753804363138,0.453460767230423,0.221985953374065,0,0.335769232728157,3.86379188064381,0.93841237725591,0.549454872801795,0.857473516316263,0,3.3885110557024,3.68260189205742,2.29158205375759,2.749650917499,2.05524755931193,0.755393897389701,3.37511250115903,2.2516060161211,1.81256963593682,1.03552062350364,2.17953429926771,3.99024873401031,3.92687293234509,1.94485373654635,1.46729213839588,1.65459157605013,0.666740183404846,1.03017528619447,0.962757628775446,1.01078884705519,0.50695859978048,0.754505365544305,0.936415074698824,1.15245274328765,1.60819313075717,3.33405583898152,2.78122382267653,1.54327376370964,2.06042950401653,1.03039244094078,1.71434626192708,1.06485483695602,1.1921809497366,0.581385666529314,1.31753132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| |||
|short_description=p3@Mgat3 | |||
}} |
Revision as of 15:55, 5 August 2015
Short description: | p3@Mgat3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Mgat3_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | -172bp_to_ENSMUST00000044970, NM_010795, uc007wvf.1_5end |
EntrezGene: | 17309 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.44e-17 | 23 |
neuroblast (sensu Vertebrata) | 2.44e-17 | 23 |
neuron | 1.34e-16 | 33 |
neuronal stem cell | 1.34e-16 | 33 |
neuroblast | 1.34e-16 | 33 |
electrically signaling cell | 1.34e-16 | 33 |
ectodermal cell | 4.28e-16 | 44 |
neurectodermal cell | 4.28e-16 | 44 |
neural cell | 8.55e-16 | 43 |
electrically responsive cell | 2.84e-13 | 39 |
electrically active cell | 2.84e-13 | 39 |
embryonic cell | 3.99e-09 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.01e-30 | 73 |
nervous system | 5.80e-29 | 75 |
ectoderm-derived structure | 1.18e-24 | 95 |
ectoderm | 1.18e-24 | 95 |
presumptive ectoderm | 1.18e-24 | 95 |
neurectoderm | 1.52e-24 | 64 |
neural plate | 1.52e-24 | 64 |
presumptive neural plate | 1.52e-24 | 64 |
regional part of nervous system | 6.63e-24 | 54 |
neural tube | 2.89e-22 | 52 |
neural rod | 2.89e-22 | 52 |
future spinal cord | 2.89e-22 | 52 |
neural keel | 2.89e-22 | 52 |
ecto-epithelium | 2.93e-20 | 73 |
brain | 4.02e-18 | 47 |
future brain | 4.02e-18 | 47 |
regional part of brain | 1.82e-17 | 46 |
pre-chordal neural plate | 4.48e-16 | 49 |
gray matter | 4.67e-15 | 34 |
anterior neural tube | 1.65e-14 | 40 |
regional part of forebrain | 7.71e-14 | 39 |
forebrain | 7.71e-14 | 39 |
future forebrain | 7.71e-14 | 39 |
structure with developmental contribution from neural crest | 1.96e-13 | 92 |
brain grey matter | 3.05e-11 | 29 |
regional part of telencephalon | 3.05e-11 | 29 |
telencephalon | 3.05e-11 | 29 |
posterior neural tube | 8.90e-09 | 12 |
chordal neural plate | 8.90e-09 | 12 |
cerebral cortex | 4.16e-07 | 21 |
cerebral hemisphere | 4.16e-07 | 21 |
pallium | 4.16e-07 | 21 |
organ system subdivision | 6.30e-07 | 194 |