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FFCP PHASE1:Mm9::chr6:60778826..60778877,-: Difference between revisions

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{{FFCP|EntrezGene=20617|HGNC=|MCL_coexpression_id=2|UniProt=O55042|association_with_transcript=112bp_to_ENSMUST00000114268,NM_001042451,uc009cdn.1,uc009cdp.1_5end|description=CAGE_peak_1_at_Snca_5end|id=chr6:60778826..60778877,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!1.13e-10!34;UBERON:0000025!4.53e-10!114;UBERON:0001017!9.14e-10!73;UBERON:0005743!9.14e-10!73;UBERON:0002346!1.06e-09!71;UBERON:0003075!1.06e-09!71;UBERON:0007284!1.06e-09!71;UBERON:0001049!1.60e-09!52;UBERON:0005068!1.60e-09!52;UBERON:0006241!1.60e-09!52;UBERON:0007135!1.60e-09!52;UBERON:0000073!4.51e-09!75;UBERON:0001016!4.51e-09!75;UBERON:0000955!7.81e-09!50;UBERON:0006238!7.81e-09!50;UBERON:0002791!1.36e-08!29;UBERON:0003528!1.36e-08!29;UBERON:0001893!1.36e-08!29;UBERON:0002616!2.06e-08!49;UBERON:0004111!2.99e-08!122;UBERON:0003080!5.21e-08!40;UBERON:0003056!6.56e-08!49;UBERON:0002780!7.07e-08!39;UBERON:0001890!7.07e-08!39;UBERON:0006240!7.07e-08!39;UBERON:0002021!7.41e-08!10;UBERON:0000411!7.41e-08!10;UBERON:0001950!7.41e-08!10;UBERON:0000033!1.19e-07!63;UBERON:0004121!2.13e-07!102;UBERON:0000924!2.13e-07!102;UBERON:0006601!2.13e-07!102|ontology_enrichment_uberon_v019_2=UBERON:0002020,9.96e-11,34;UBERON:0000073,1.90e-10,54;UBERON:0000025,4.33e-10,114;UBERON:0001017,8.97e-10,73;UBERON:0001049,1.27e-09,52;UBERON:0005068,1.27e-09,52;UBERON:0006241,1.27e-09,52;UBERON:0007135,1.27e-09,52;UBERON:0002346,1.52e-09,64;UBERON:0003075,1.52e-09,64;UBERON:0007284,1.52e-09,64;UBERON:0010314,2.74e-09,92;UBERON:0001016,4.45e-09,75;UBERON:0003528,1.24e-08,29;UBERON:0002791,1.24e-08,29;UBERON:0001893,1.24e-08,29;UBERON:0004111,2.90e-08,122;UBERON:0003080,4.76e-08,40;UBERON:0000955,5.33e-08,47;UBERON:0006238,5.33e-08,47;UBERON:0003056,6.00e-08,49;UBERON:0002780,6.46e-08,39;UBERON:0001890,6.46e-08,39;UBERON:0006240,6.46e-08,39;UBERON:0002021,6.78e-08,10;UBERON:0000411,6.78e-08,10;UBERON:0001950,6.78e-08,10;UBERON:0002616,1.37e-07,46;UBERON:0004121,5.34e-07,95;UBERON:0000924,5.34e-07,95;UBERON:0006601,5.34e-07,95;UBERON:0010371,5.77e-07,73|phase1_expression=2.7225304007815,0.348975407639361,0,0,0,0,0,1.80772652818207,0.84473233291,0.936258105287974,0,0.159544317990673,0.171200729931206,1.13646523144697,346.101042526474,516.311931844056,469.406020223986,29.3379813783161,28.3826877563879,30.9804445812562,33.9322727702768,0.0992909512008853,0,0,0,0,0,0,0,0,0,43.8171164687146,25.2176562909674,63.3926724061755,0,0,0.204169356262369,14.6486070757918,5.4693474116666,5.23523743973798,6.47054636834116,9.56263678941824,5.34061388334269,0,0,0,0,4.79655344036982,1.5378032791413,2.3331587888914,2.79972843250725,7.18762821824858,0,0,0,0,0,0.515672092277442,54.827760892951,73.0007551395405,70.3552857891859,3.72728985276045,1.77858959222228,0,0,0.7104801149461,2.09720077362883,0.768436610643109,12.4427534770173,13.2305819565057,9.88527318351495,135.969868576211,147.761053896629,22.4158162563366,16.1020391310637,33.0918763179608,61.6648933596577,109.04498672475,102.609164215171,44.9732241159961,48.0310128912651,49.4867702028922,90.4552916764474,102.985557635797,154.784624997909,133.761377805045,140.663220629514,95.6229157083792,2.65041676666144,2.64500460373749,0.579728977403356,0.860423876981386,0,0.539703191637817,0,0,27.8079951860869,0,0,0,7.18301440861071,0,0,0,1.08245520505607,0.760079596425296,1.01104889002957,19.4112595522402,0.776813650941515,3.85949561568544,18.2159593104443,56.3261134877461,54.8864883469419,31.1995865943929,16.9327738275415,16.9649898295062,20.7643772896874,35.2822430884584,228.229522403068,32.5151368394292,143.105303962335,195.88960226663,0,19.6163133997737,34.5587066242201,0,0,0.599902730993408,0.254140454146129,41.0426351969214,150.517698327328,72.8795242254614,227.53603513169,309.927134284361,70.0245710165718,153.317993599031,3.05518091550949,149.163957761502,0.252722758433675,3.15662783829711,12.751803410345,35.6348261871883,33.491556143795,48.8283609787717,17.6894897793452,20.6263089658608,17.5222224926693,15.5222022443409,1.72454394346274,4.16033376369202,4.75068035242662,4.60311038097907,8.06337022754234,6.61679116392116,8.0255033199098,6.17006227137329,0,0,0.284163499395593,12.8417978972011,19.2311369184499,29.8903022025285,23.2009840873506,20.2667158699826,35.481435964097,28.1366073147993,17.4377710909752,16.5806786161381,4.11399624783701,45.6385550139885,70.9352083526238,115.351790078587,228.771220133275,158.363574137239,265.385915087929,145.610026516687,0.330418782983798,1.85115396664481,5.33220626338085,13.7019636397659,11.4692040576663,5.04208811558356,5.11469500843202,6.08722003560189,3.79623249235609,2.14108641141214,8.54539709920916,9.35095418593409,8.77338392036041,0.898819408654221,2.16138049874694,0.995706366271836,6.06937283049861,15.6520462275328,9.01661885384643,9.16430975303914,6.59438456369928,5.26018649177389,9.48548056863859,7.67572769493931,13.3448918665169,8.76119863844784,5.63259991465583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{{FFCP
|DHSsupport=NA
|DPIdataset=NA
|EntrezGene=entrezgene:20617
|HGNC=
|MCL_coexpression_id=2
|TSSclassifier=NA
|UniProt=uniprot:O55042
|association_with_transcript=112bp_to_ENSMUST00000114268,NM_001042451,uc009cdn.1,uc009cdp.1_5end
|cluster_id=chr6:60778826..60778877,-
|description=CAGE_peak_1_at_Snca_5end
|id=chr6:60778826..60778877,-
|ontology_enrichment_celltype=
|ontology_enrichment_celltype_v019_2=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0002020!1.13e-10!34;UBERON:0000025!4.53e-10!114;UBERON:0001017!9.14e-10!73;UBERON:0005743!9.14e-10!73;UBERON:0002346!1.06e-09!71;UBERON:0003075!1.06e-09!71;UBERON:0007284!1.06e-09!71;UBERON:0001049!1.60e-09!52;UBERON:0005068!1.60e-09!52;UBERON:0006241!1.60e-09!52;UBERON:0007135!1.60e-09!52;UBERON:0000073!4.51e-09!75;UBERON:0001016!4.51e-09!75;UBERON:0000955!7.81e-09!50;UBERON:0006238!7.81e-09!50;UBERON:0002791!1.36e-08!29;UBERON:0003528!1.36e-08!29;UBERON:0001893!1.36e-08!29;UBERON:0002616!2.06e-08!49;UBERON:0004111!2.99e-08!122;UBERON:0003080!5.21e-08!40;UBERON:0003056!6.56e-08!49;UBERON:0002780!7.07e-08!39;UBERON:0001890!7.07e-08!39;UBERON:0006240!7.07e-08!39;UBERON:0002021!7.41e-08!10;UBERON:0000411!7.41e-08!10;UBERON:0001950!7.41e-08!10;UBERON:0000033!1.19e-07!63;UBERON:0004121!2.13e-07!102;UBERON:0000924!2.13e-07!102;UBERON:0006601!2.13e-07!102
|ontology_enrichment_uberon_v019_2=UBERON:0002020,9.96e-11,34;UBERON:0000073,1.90e-10,54;UBERON:0000025,4.33e-10,114;UBERON:0001017,8.97e-10,73;UBERON:0001049,1.27e-09,52;UBERON:0005068,1.27e-09,52;UBERON:0006241,1.27e-09,52;UBERON:0007135,1.27e-09,52;UBERON:0002346,1.52e-09,64;UBERON:0003075,1.52e-09,64;UBERON:0007284,1.52e-09,64;UBERON:0010314,2.74e-09,92;UBERON:0001016,4.45e-09,75;UBERON:0003528,1.24e-08,29;UBERON:0002791,1.24e-08,29;UBERON:0001893,1.24e-08,29;UBERON:0004111,2.90e-08,122;UBERON:0003080,4.76e-08,40;UBERON:0000955,5.33e-08,47;UBERON:0006238,5.33e-08,47;UBERON:0003056,6.00e-08,49;UBERON:0002780,6.46e-08,39;UBERON:0001890,6.46e-08,39;UBERON:0006240,6.46e-08,39;UBERON:0002021,6.78e-08,10;UBERON:0000411,6.78e-08,10;UBERON:0001950,6.78e-08,10;UBERON:0002616,1.37e-07,46;UBERON:0004121,5.34e-07,95;UBERON:0000924,5.34e-07,95;UBERON:0006601,5.34e-07,95;UBERON:0010371,5.77e-07,73
|phase1_expression=2.7225304007815,0.348975407639361,0,0,0,0,0,1.80772652818207,0.84473233291,0.936258105287974,0,0.159544317990673,0.171200729931206,1.13646523144697,346.101042526474,516.311931844056,469.406020223986,29.3379813783161,28.3826877563879,30.9804445812562,33.9322727702768,0.0992909512008853,0,0,0,0,0,0,0,0,0,43.8171164687146,25.2176562909674,63.3926724061755,0,0,0.204169356262369,14.6486070757918,5.4693474116666,5.23523743973798,6.47054636834116,9.56263678941824,5.34061388334269,0,0,0,0,4.79655344036982,1.5378032791413,2.3331587888914,2.79972843250725,7.18762821824858,0,0,0,0,0,0.515672092277442,54.827760892951,73.0007551395405,70.3552857891859,3.72728985276045,1.77858959222228,0,0,0.7104801149461,2.09720077362883,0.768436610643109,12.4427534770173,13.2305819565057,9.88527318351495,135.969868576211,147.761053896629,22.4158162563366,16.1020391310637,33.0918763179608,61.6648933596577,109.04498672475,102.609164215171,44.9732241159961,48.0310128912651,49.4867702028922,90.4552916764474,102.985557635797,154.784624997909,133.761377805045,140.663220629514,95.6229157083792,2.65041676666144,2.64500460373749,0.579728977403356,0.860423876981386,0,0.539703191637817,0,0,27.8079951860869,0,0,0,7.18301440861071,0,0,0,1.08245520505607,0.760079596425296,1.01104889002957,19.4112595522402,0.776813650941515,3.85949561568544,18.2159593104443,56.3261134877461,54.8864883469419,31.1995865943929,16.9327738275415,16.9649898295062,20.7643772896874,35.2822430884584,228.229522403068,32.5151368394292,143.105303962335,195.88960226663,0,19.6163133997737,34.5587066242201,0,0,0.599902730993408,0.254140454146129,41.0426351969214,150.517698327328,72.8795242254614,227.53603513169,309.927134284361,70.0245710165718,153.317993599031,3.05518091550949,149.163957761502,0.252722758433675,3.15662783829711,12.751803410345,35.6348261871883,33.491556143795,48.8283609787717,17.6894897793452,20.6263089658608,17.5222224926693,15.5222022443409,1.72454394346274,4.16033376369202,4.75068035242662,4.60311038097907,8.06337022754234,6.61679116392116,8.0255033199098,6.17006227137329,0,0,0.284163499395593,12.8417978972011,19.2311369184499,29.8903022025285,23.2009840873506,20.2667158699826,35.481435964097,28.1366073147993,17.4377710909752,16.5806786161381,4.11399624783701,45.6385550139885,70.9352083526238,115.351790078587,228.771220133275,158.363574137239,265.385915087929,145.610026516687,0.330418782983798,1.85115396664481,5.33220626338085,13.7019636397659,11.4692040576663,5.04208811558356,5.11469500843202,6.08722003560189,3.79623249235609,2.14108641141214,8.54539709920916,9.35095418593409,8.77338392036041,0.898819408654221,2.16138049874694,0.995706366271836,6.06937283049861,15.6520462275328,9.01661885384643,9.16430975303914,6.59438456369928,5.26018649177389,9.48548056863859,7.67572769493931,13.3448918665169,8.76119863844784,5.63259991465583,184.196996710568,263.978730437032,300.415782146165,369.002560805687,378.406963651542,436.937961656916,280.21603787709,136.51786094458,83.1921081959887,50.3188722845741,45.0290546678889,17.78614736753,9.59799736199025,12.19902411949,2.41221760681684,39.5371826956534,9.47457058852424,9.12603868075345,13.0703716046895,17.1323881250607,22.4458384972033,36.8967643373321,83.1269339874223,97.1032487694137,79.2843588942614,48.9526139778485,207.61481974484,192.889124744205,170.541240067602,0,0,4.91764273019036,1.93155722413313,51.2156382061056,63.9975808793429,0,15.1482556322624,14.1978698737316,12.8844785617891,19.6035291936847,17.4447222505363,17.8238939265915,14.1538265394416,18.2164815753702,28.0565623594859,25.2984177885775,166.123120590074,0.851640511249612,20.1214132143998,7.98146100832523,0.824850614862677,1.32745138339963,13.110154352369,10.2790009368015,15.8428266994954,10.335566250827,10.1453598821496,10.0787034335606,2.54473610634254,5.70395805415554,5.37262488490887,5.27093042874994,10.3135543248187,5.10659408630682,6.12207719706455,6.20921682157222,12.6458850668639,14.896579625951,29.7875925395458,25.0114511315224,11.8741330154694,8.91752490642099,25.4198485036584,4.6310963591542,5.27636009412736,5.32832608096488,2.83470747162333,3.70054266409723,1.14898629821543,1.1659233465194,43.5749459724698,309.447165124911,48.9136877072837,180.564664185469,491.264935868234,342.555734668889,517.038671446741,0,0.279902904647316,1.38199973804424,0.954670618015114,3.63786392618306,11.9958485604841,10.0444966964275,9.19988502463662,8.07941485860857,5.52943820177765,11.7367907129977,8.63794608547298,1.29614973291793,3.10669656543463,0.56369293868419,7.47582730219894,11.4166358415397,10.8892665472667,10.4619457016962,4.73077151374179,4.3422178298929,4.4269490846943,2.09718688851422,1.44950472495604,0.864090018773596,1.89606672376907,7.9062833963164,13.0442915599331,6.75588279484534,6.62398773969681,4.37098980518783,3.24527713703916,8.27061352177632,7.47151729616292,5.41068327250499,2.82313318383153,2.82627854145282,1.73181314952593,2.57129184799452,3.85441652145859,0,0,0.167884616364078,5.21611903886914,7.88266396894964,0.36630324853453,1.92931541171159,1.50471631210609,570.399361043237,563.438089484785,555.135752522775,444.58418272312,364.463900517982,415.466643564335,398.263275136765,301.715206160228,331.247100967454,307.031864868829,8.30298780673413,37.1093132262959,53.6103522067981,106.480742075913,68.5435041793502,78.501178108156,93.1213789488768,90.6554251851135,103.656904698156,99.0573070114086,100.884761356315,80.9207004546267,88.7721490814485,83.1686729739252,75.7573835524539,85.7328644309533,78.6854573165569,81.9864186970746,97.2522725895804,95.6792980873583,109.718160763333,108.970144981833,92.0363693196659,99.4169489765127,92.1330834266087,91.553005738794,87.0737150874397,104.175605729386,92.6184056428777,84.7324830203185,81.0277173788109,84.5168458782335,89.621598454162,81.1869047814462,83.3356559438531,26.2301106834843,54.0382015508893,47.9162450527705,13.7727599089567,42.5741438900665,53.7933378639378
|short_description=p1@Snca
}}

Revision as of 00:26, 6 August 2015

Short description:p1@Snca
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_1_at_Snca_5end
Coexpression cluster:MCL_coexpression_mm9:2
Association with transcript: 112bp_to_ENSMUST00000114268, NM_001042451, uc009cdn.1, uc009cdp.1_5end
EntrezGene:20617
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p1@Snca

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G72.72
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.35
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.00
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I70.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.00
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E91.81
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.84
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.94
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E60.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F10.16
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.17
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E81.14
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A1346.10
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A3516.31
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A5469.41
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A229.34
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A428.38
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A630.98
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A333.93
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.10
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.00
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.00
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.00
GP2+ M cell, pool1.CNhs13228.11845-124H90.00
GP2+ M cell, pool2.CNhs13231.11846-124I10.00
GP2+ M cell, pool3.CNhs13240.11847-124I20.00
Ileum epithelium, pool1.CNhs13199.10252-104B90.00
Ileum epithelium, pool2.CNhs13232.10253-104C10.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I343.82
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G625.22
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E963.39
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.00
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.00
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F70.20
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G814.65
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H15.47
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H35.24
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G96.47
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H29.56
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H45.34
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.00
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.00
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B70.00
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C24.80
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B81.54
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C32.33
Mouse Astrocytes, donor2.CNhs12078.11552-120C42.80
Mouse Astrocytes, donor3.CNhs12107.11633-122C47.19
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.00
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A10.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.00
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.00
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C50.52
Mouse Granule cells, donor1.CNhs12131.11713-123C354.83
Mouse Granule cells, donor2.CNhs12357.11731-123E373.00
Mouse Granule cells, donor3.CNhs12108.11636-122C770.36
Mouse Meningeal cells, donor1.CNhs12132.11716-123C63.73
Mouse Meningeal cells, donor3.CNhs12109.11639-122D11.78
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.71
Mouse Microglia, donor1.CNhs12629.11718-123C82.10
Mouse Microglia, donor2.CNhs12634.11736-123E80.77
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D512.44
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F513.23
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D99.89
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F1135.97
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D5147.76
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D222.42
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F216.10
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D633.09
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D361.66
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F3109.04
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D7102.61
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D444.97
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F448.03
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D849.49
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E490.46
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E5102.99
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I6154.78
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D6133.76
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F6140.66
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E195.62
Mouse Schwann, donor1.CNhs12507.11728-123D92.65
Mouse Schwann, donor2.CNhs12573.11746-123F92.65
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G30.58
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.86
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.54
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A727.81
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.00
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G67.18
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G11.08
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.76
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G31.01
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B619.41
accessory axillary lymph node, adult.CNhs10475.1063-29H90.78
adrenal gland, adult.CNhs10508.49-24D73.86
adrenal gland, embryo E14.CNhs11038.406-44C518.22
adrenal gland, embryo E16.CNhs11004.1254-43D656.33
adrenal gland, embryo E17.CNhs11043.1263-45I154.89
adrenal gland, embryo E18.CNhs11026.1262-18F531.20
adrenal gland, neonate N00.CNhs11191.1311-23C116.93
adrenal gland, neonate N25.CNhs11223.1377-27I316.96
amnion, adult pregnant day17.5.CNhs10488.583-22A820.76
aorta, adult.CNhs10498.46-23H135.28
bone (os femoris), adult.CNhs10483.56-12G2228.23
bone (os femoris), neonate N02.CNhs11227.1985-43F532.52
bone (os femoris), neonate N16.CNhs11225.1525-43A6143.11
bone (os femoris), neonate N20.CNhs11195.1350-25C3195.89
cecum, adult.CNhs10467.37-13H40.00
cerebellum, adult.CNhs10494.15-8B219.62
cerebellum, neonate N30.CNhs11135.1395-42I234.56
colon, adult.CNhs10468.36-18H70.00
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.00
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.60
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.25
corpora quadrigemina, adult.CNhs10501.16-22A441.04
corpus striatum, adult.CNhs10487.19-21D8150.52
corpus striatum, neonate N00.CNhs11226.630-43F172.88
cortex, adult.CNhs10473.12-14D5227.54
cortex, neonate N30.CNhs11107.1392-42F2309.93
diencephalon, adult.CNhs10482.20-12F270.02
diencephalon, neonate N30.CNhs11201.1388-42B2153.32
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B13.06
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A2149.16
epididymis, adult.CNhs10490.58-23B20.25
eyeball, adult.CNhs10484.31-12G43.16
eyeball, embryo E12.CNhs11016.345-16C612.75
eyeball, embryo E14.CNhs10521.399-16E235.63
eyeball, embryo E15.CNhs10593.426-16C933.49
eyeball, embryo E17.CNhs11023.1261-18D448.83
eyeball, neonate N00.CNhs11207.633-15C617.69
eyeball, neonate N01.CNhs11140.1532-43E720.63
eyeball, neonate N02.CNhs11205.1551-44G817.52
eyeball, neonate N16.CNhs11188.777-19A215.52
forelimb, embryo E11.CNhs10596.335-25E21.72
forelimb, embryo E12.CNhs10600.359-14H24.16
forelimb, embryo E13.CNhs10589.384-1E24.75
forelimb, embryo E14.CNhs10577.413-26A84.60
forelimb, embryo E15.CNhs11007.437-20E78.06
forelimb, embryo E17.CNhs10598.1517-43C46.62
forelimb, embryo E18.CNhs11008.1520-43B58.03
gonad, embryo E13.CNhs11044.1564-45I66.17
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.28
heart, embryo E11.CNhs10586.331-24E912.84
heart, embryo E12.CNhs11015.353-12F519.23
heart, embryo E13.CNhs11013.376-3I929.89
heart, embryo E14.CNhs10597.403-26D423.20
heart, embryo E15.CNhs11017.431-16C820.27
heart, embryo E16.CNhs11021.457-17C635.48
heart, embryo E17.CNhs11025.479-18E528.14
heart, embryo E18.CNhs11030.1283-20G317.44
heart, neonate N00.CNhs11213.639-21E316.58
heart, neonate N03.CNhs11221.1349-25I24.11
heart, neonate N10.CNhs11118.749-24G145.64
heart, neonate N16.CNhs11209.782-15G170.94
heart, neonate N20.CNhs11127.821-26I6115.35
heart, neonate N25.CNhs11196.1351-25D3228.77
heart, neonate N30.CNhs11202.1390-42D2158.36
hippocampus, adult.CNhs10478.13-16E8265.39
hippocampus, neonate N00.CNhs11228.627-43G1145.61
intestinal mucosa, adult.CNhs10506.860-29I30.33
intestine, adult.CNhs10496.178-9A31.85
intestine, embryo E12.CNhs11019.1251-16I55.33
intestine, embryo E13.CNhs11010.381-16D513.70
intestine, embryo E15.CNhs10602.976-16D811.47
intestine, embryo E16.CNhs10585.463-22H45.04
intestine, embryo E17.CNhs10582.482-18D35.11
intestine, embryo E18.CNhs10526.1289-20F76.09
intestine, neonate N00.CNhs11126.644-26D13.80
intestine, neonate N01.CNhs11192.1322-23E92.14
intestine, neonate N06.CNhs11102.688-20B88.55
intestine, neonate N07.CNhs11095.720-20F29.35
intestine, neonate N10.CNhs11098.755-23A58.77
intestine, neonate N20.CNhs11187.827-18D10.90
intestine, neonate N25.CNhs11121.1352-25E32.16
intestine, neonate N30.CNhs11131.1384-42G11.00
kidney, embryo E14.CNhs10606.411-4I96.07
kidney, embryo E15.CNhs10997.434-16F815.65
kidney, embryo E16.CNhs10584.464-22A59.02
kidney, embryo E17.CNhs11028.483-18I29.16
kidney, embryo E18.CNhs11001.1288-20C76.59
kidney, neonate N00.CNhs11214.646-21G75.26
kidney, neonate N10.CNhs11206.758-6D59.49
kidney, neonate N20.CNhs11113.832-19I17.68
kidney, neonate N25.CNhs11122.1353-25F313.34
kidney, neonate N30.CNhs11203.1385-42H18.76
liver, adult pregnant day01.CNhs10466.508-5B25.63
liver, embryo E12.CNhs10601.355-15F8184.20
liver, embryo E13.CNhs10524.378-3H6263.98
liver, embryo E14.CNhs10594.409-16E1300.42
liver, embryo E15.CNhs10520.433-16D7369.00
liver, embryo E16.CNhs10523.462-17F5378.41
liver, embryo E17.CNhs10510.481-18A3436.94
liver, embryo E18.CNhs10579.499-43G4280.22
liver, neonate N00.CNhs11117.641-24F4136.52
liver, neonate N03.CNhs11123.1345-25G283.19
liver, neonate N06.CNhs11101.684-20A850.32
liver, neonate N07.CNhs11103.716-20H245.03
liver, neonate N10.CNhs11115.751-24B917.79
liver, neonate N20.CNhs11220.823-25A39.60
liver, neonate N25.CNhs11198.1368-26H112.20
liver, neonate N30.CNhs11106.1382-42D12.41
lung, adult.CNhs10474.28-22B139.54
lung, embryo E12.CNhs10522.354-16G29.47
lung, embryo E14.CNhs10604.404-26F89.13
lung, embryo E15.CNhs11020.432-17C513.07
lung, embryo E16.CNhs10998.458-17B617.13
lung, embryo E17.CNhs10605.480-44A622.45
lung, embryo E18.CNhs10583.1287-20I636.90
lung, neonate N00.CNhs11224.640-42C683.13
lung, neonate N06.CNhs11212.683-20E597.10
lung, neonate N07.CNhs11111.715-19A379.28
lung, neonate N10.CNhs11219.750-23E648.95
lung, neonate N20.CNhs11109.822-18A4207.61
lung, neonate N25.CNhs11119.1359-25C7192.89
lung, neonate N30.CNhs11133.1394-42H2170.54
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B64.92
mammary gland, adult pregnant day19.CNhs10476.588-5H21.93
medulla oblongata, adult.CNhs10477.17-12C251.22
medulla oblongata, neonate N30.CNhs11200.1396-42A364.00
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C215.15
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E114.20
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E212.88
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E319.60
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D717.44
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D817.82
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D914.15
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D418.22
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D528.06
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D625.30
olfactory brain, adult.CNhs10489.18-22I9166.12
ovary, adult.CNhs10507.91-2I70.85
ovary, embryo E18.CNhs11040.505-44H720.12
ovary, neonate N00.CNhs11217.1299-22I47.98
oviduct, adult pregnant day01.CNhs10500.988-6G60.82
pancreas, adult.CNhs10486.34-16E41.33
pancreas, embryo E14.CNhs11012.405-44F413.11
pancreas, embryo E15.CNhs11042.1556-45F210.28
pancreas, embryo E16.CNhs11003.460-26E515.84
pancreas, embryo E17.CNhs10599.1558-45G310.34
pancreas, embryo E18.CNhs10580.1535-43I710.15
pancreas, neonate N00.CNhs11105.645-26G910.08
pancreas, neonate N01.CNhs11138.1531-43D72.54
pancreas, neonate N02.CNhs11139.1539-43D85.70
pancreas, neonate N16.CNhs11136.787-43B65.37
pancreas, neonate N25.CNhs11094.1555-45E25.27
pancreas, neonate N30.CNhs11182.1548-44H510.31
pituitary gland, adult.CNhs10493.21-1G85.11
pituitary gland, embryo E12.CNhs11018.346-16E66.12
pituitary gland, embryo E13.CNhs11009.370-44C76.21
pituitary gland, embryo E14.CNhs11037.398-44A512.65
pituitary gland, embryo E15.CNhs10592.427-16B914.90
pituitary gland, embryo E16.CNhs11036.449-43F629.79
pituitary gland, embryo E17.CNhs11039.1265-44F525.01
pituitary gland, neonate N00.CNhs11190.1308-22E911.87
placenta, adult pregnant day10.CNhs10472.539-13I78.92
placenta, adult pregnant day17.CNhs10464.577-18G325.42
prostate, adult.CNhs10470.859-1F84.63
skin, adult.CNhs10492.30-1C35.28
skin, neonate N00.CNhs11124.650-25G45.33
skin, neonate N03.CNhs11215.662-22H32.83
skin, neonate N06.CNhs11097.693-20I53.70
skin, neonate N10.CNhs11108.762-6C41.15
small intestine, neonate N16.CNhs11114.790-21I11.17
spinal cord, adult.CNhs10505.24-13C943.57
spleen, adult.CNhs10465.25-2G2309.45
spleen, embryo E16.CNhs11035.461-43C148.91
spleen, embryo E18.CNhs11011.1271-21F2180.56
spleen, neonate N10.CNhs11116.752-24D1491.26
spleen, neonate N20.CNhs11112.824-19H1342.56
spleen, neonate N25.CNhs11099.1354-25G3517.04
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.28
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D31.38
stomach, adult.CNhs10503.33-1H60.95
stomach, embryo E12.CNhs10588.356-43E33.64
stomach, embryo E15.CNhs10603.1252-16G812.00
stomach, embryo E16.CNhs11022.459-17D410.04
stomach, embryo E17.CNhs11006.1035-18D59.20
stomach, embryo E18.CNhs10999.1286-20C68.08
stomach, neonate N03.CNhs11193.1340-24B85.53
stomach, neonate N07.CNhs11210.718-18A911.74
stomach, neonate N25.CNhs11104.1355-25E48.64
stomach, neonate N30.CNhs11134.1386-42I11.30
submandibular gland, adult.CNhs10469.59-29C13.11
testis, adult.CNhs10504.57-7G50.56
testis, embryo E13.CNhs11031.389-23F57.48
testis, embryo E15.CNhs11034.443-27C511.42
testis, embryo E16.CNhs11033.470-26G510.89
testis, embryo E17.CNhs11029.486-18I510.46
testis, embryo E18.CNhs11027.503-18G54.73
testis, neonate N00.CNhs11189.1300-22B74.34
testis, neonate N07.CNhs11222.726-26I44.43
testis, neonate N10.CNhs11204.763-44D92.10
testis, neonate N20.CNhs11110.839-18H31.45
testis, neonate N30.CNhs11130.1391-42E20.86
thymus, adult.CNhs10471.38-12B51.90
thymus, embryo E14.CNhs11041.402-44I47.91
thymus, embryo E15.CNhs11005.430-45I213.04
thymus, embryo E16.CNhs11002.456-26C56.76
thymus, embryo E17.CNhs10581.478-18C16.62
thymus, embryo E18.CNhs10595.1273-19G44.37
thymus, neonate N02.CNhs11181.1541-43F83.25
thymus, neonate N03.CNhs11137.2104-43C78.27
thymus, neonate N06.CNhs11197.681-26C47.47
thymus, neonate N07.CNhs11211.713-19D35.41
thymus, neonate N10.CNhs11194.748-24E42.82
thymus, neonate N20.CNhs11186.820-7A22.83
thymus, neonate N25.CNhs11125.1362-25G71.73
thymus, neonate N30.CNhs11132.1393-42G22.57
tongue, adult.CNhs10499.32-1B43.85
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.00
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.00
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.17
urinary bladder, adult.CNhs10481.879-12E45.22
uterus, adult pregnant day19.CNhs10497.590-15F57.88
uterus, adult.CNhs10509.92-27E50.37
vagina, adult.CNhs10502.89-27D51.93
vesicular gland, adult.CNhs10491.51-27F81.50
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A1570.40
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A2563.44
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A3555.14
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D7444.58
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A4364.46
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A5415.47
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A6398.26
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A7301.72
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A8331.25
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A9307.03
whole body, embryo E11.CNhs11014.324-5I88.30
whole body, embryo E12.CNhs10587.857-27C937.11
whole body, embryo E13.CNhs10512.372-23H253.61
whole body, embryo E14.5.CNhs10578.420-27D2106.48
whole body, embryo E14.CNhs10519.395-14B168.54
whole body, embryo E16.CNhs10514.453-14F278.50
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G593.12
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G590.66
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G5103.66
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G599.06
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G5100.88
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G580.92
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G588.77
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G583.17
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G575.76
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G585.73
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G578.69
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G581.99
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G597.25
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G595.68
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G5109.72
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G5108.97
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G592.04
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G599.42
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G592.13
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G591.55
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G587.07
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G5104.18
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G592.62
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G584.73
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G581.03
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G584.52
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G589.62
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G581.19
whole body, embryo E17.5.CNhs10513.490-9F983.34
whole body, embryo E17.CNhs10517.475-3I526.23
whole body, embryo E18.CNhs10516.493-3B354.04
whole body, neonate N00.CNhs10525.657-19C247.92
whole body, neonate N01.CNhs10576.659-23C613.77
whole body, neonate N06.CNhs10515.692-21D142.57
whole body, neonate N10.CNhs10518.761-6B453.79





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Uber anatomy
Ontology termp-valuen
gray matter9.96e-1134
regional part of nervous system1.90e-1054
tube4.33e-10114
central nervous system8.97e-1073
neural tube1.27e-0952
neural rod1.27e-0952
future spinal cord1.27e-0952
neural keel1.27e-0952
neurectoderm1.52e-0964
neural plate1.52e-0964
presumptive neural plate1.52e-0964
structure with developmental contribution from neural crest2.74e-0992
nervous system4.45e-0975
brain grey matter1.24e-0829
regional part of telencephalon1.24e-0829
telencephalon1.24e-0829
anatomical conduit2.90e-08122
anterior neural tube4.76e-0840
brain5.33e-0847
future brain5.33e-0847
pre-chordal neural plate6.00e-0849
regional part of forebrain6.46e-0839
forebrain6.46e-0839
future forebrain6.46e-0839
occipital lobe6.78e-0810
visual cortex6.78e-0810
neocortex6.78e-0810
regional part of brain1.37e-0746
ectoderm-derived structure5.34e-0795
ectoderm5.34e-0795
presumptive ectoderm5.34e-0795
ecto-epithelium5.77e-0773
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