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{{f5samples
{{f5samples
|id=FF:11929-125I3
|ancestors_in_anatomy_facet=UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000075,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000926,UBERON:0001062,UBERON:0001434,UBERON:0001704,UBERON:0001708,UBERON:0002050,UBERON:0002090,UBERON:0002204,UBERON:0002329,UBERON:0002342,UBERON:0002346,UBERON:0002532,UBERON:0002539,UBERON:0003059,UBERON:0003075,UBERON:0003077,UBERON:0003089,UBERON:0003104,UBERON:0003129,UBERON:0004120,UBERON:0004121,UBERON:0004288,UBERON:0004765,UBERON:0005291,UBERON:0005423,UBERON:0005944,UBERON:0006598,UBERON:0007284,UBERON:0008814,UBERON:0008816,UBERON:0009142
|name=Mallassez-derived cells, donor2
|sample_id=11929
|rna_tube_id=125I3
|rna_box=125
|rna_position=I3
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=MZe6
|rna_catalog_number=
|sample_species=
|sample_strain=
|sample_dev_stage=
|sample_tissue=ANATOMICAL SYSTEM
|sample_donor(cell lot)=MZe6
|sample_sex=female
|sample_age=29
|sample_ethnicity=
|rna_rin=
|rna_od260/230=2.09
|rna_od260/280=2.07
|sample_cell_type=epithelial cell rests of Malassez
|sample_cell_line=
|sample_collaboration=Mitsuhiro Ohshima (Nihon University School of Dentistry)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=21.7974
|rna_concentration=2.17974
|sample_note=
|profile_hcage=CNhs13550,LSID1033,release012,COMPLETED
|profile_cagescan=
|profile_srnaseq=
|profile_rnaseq=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000144,CL:0000220,CL:0000221,CL:0000255,CL:0000548,CL:0002077,CL:0002159,CL:0002166,CL:0002321,CL:0002371
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000144,CL:0000220,CL:0000221,CL:0000255,CL:0000548,CL:0002077,CL:0002159,CL:0002166,CL:0002321,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000075,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000926,UBERON:0001062,UBERON:0001434,UBERON:0001704,UBERON:0001708,UBERON:0002050,UBERON:0002090,UBERON:0002204,UBERON:0002329,UBERON:0002342,UBERON:0002346,UBERON:0002532,UBERON:0002539,UBERON:0003059,UBERON:0003075,UBERON:0003077,UBERON:0003089,UBERON:0003104,UBERON:0003129,UBERON:0004120,UBERON:0004121,UBERON:0004288,UBERON:0004765,UBERON:0005291,UBERON:0005423,UBERON:0005944,UBERON:0006598,UBERON:0007284,UBERON:0008814,UBERON:0008816,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|comment=
|created_by=
|creation_date=
|def=
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 33:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=TP53:2.80914205801;TBX4,5:2.37828263609;NKX3-2:1.83977568216;TEF:1.8056156966;PAX4:1.42474871389;TEAD1:1.32950532179;PPARG:1.29162178043;ZEB1:1.2079460969;EVI1:1.07788914972;HAND1,2:1.05352844808;SNAI1..3:1.0096940471;ADNP_IRX_SIX_ZHX:1.00730469318;HSF1,2:0.962065096701;NKX2-3_NKX2-5:0.931692381447;NFIX:0.849710768293;TFCP2:0.822556814095;PDX1:0.774959749839;IRF7:0.774540799456;VSX1,2:0.771852435736;HMGA1,2:0.733550085535;ZNF238:0.725084959372;POU3F1..4:0.684043015349;ELK1,4_GABP{A,B1}:0.680527996792;GLI1..3:0.640868577972;FOS_FOS{B,L1}_JUN{B,D}:0.61768667376;FOXN1:0.616506003746;XCPE1{core}:0.590848457105;NR1H4:0.58984081989;NFIL3:0.577800749342;MYOD1:0.570085259105;ZIC1..3:0.564993204052;BACH2:0.554093807044;NANOG:0.54980933477;TLX2:0.543102784506;SP1:0.507536308056;MAZ:0.499318854079;POU1F1:0.497480964413;FOSL2:0.492830266617;ZNF148:0.489631395452;NKX2-2,8:0.474969404948;SOX17:0.47239568965;NKX2-1,4:0.458957378796;UFEwm:0.412289055086;SOX2:0.406238164946;ARID5B:0.402095492683;ONECUT1,2:0.369912029918;KLF4:0.361996900084;SPZ1:0.328589469817;NR3C1:0.320892864771;NKX3-1:0.319304855734;MAFB:0.296351163464;TLX1..3_NFIC{dimer}:0.278495867591;GCM1,2:0.212367680963;SMAD1..7,9:0.206526735337;TBP:0.193048732547;IKZF1:0.191001806378;HOX{A4,D4}:0.178566129575;GFI1B:0.170292605899;LMO2:0.151620043594;ZNF143:0.150467187327;NRF1:0.0831109435566;MYBL2:0.0767720392189;HLF:0.0632680901138;MTF1:0.0487603792357;NFATC1..3:0.0433770504579;TFAP2{A,C}:0.0395966442323;IRF1,2:0.0351926634326;HIF1A:0.0309940614223;LHX3,4:0.012367015289;HMX1:0.00965678572197;GFI1:0.00793873099197;LEF1_TCF7_TCF7L1,2:0.00662569791811;NFE2:-0.00536701622073;STAT1,3:-0.0121255209373;RBPJ:-0.0404028792318;FOXA2:-0.0462090782455;ZBTB6:-0.0599814969446;NFKB1_REL_RELA:-0.0606801066544;ALX1:-0.0767933944241;GTF2A1,2:-0.0791661261148;MTE{core}:-0.0841257166108;POU6F1:-0.0881998866156;OCT4_SOX2{dimer}:-0.102161020932;GZF1:-0.10224680257;PAX1,9:-0.103691722798;RUNX1..3:-0.149448317782;HOX{A5,B5}:-0.151080558409;NFE2L1:-0.166393562317;NHLH1,2:-0.169665478797;JUN:-0.179443026808;RXR{A,B,G}:-0.182157098784;SRF:-0.182677973616;HNF1A:-0.182901363719;REST:-0.188998367319;EBF1:-0.191892571617;PAX2:-0.200766692417;MYFfamily:-0.205825795033;EP300:-0.217303050066;AIRE:-0.222916736785;NFY{A,B,C}:-0.225603880368;CEBPA,B_DDIT3:-0.236601857068;ELF1,2,4:-0.238179792827;FOXO1,3,4:-0.265618698829;FOXP3:-0.278523305933;YY1:-0.280569623918;EN1,2:-0.282341975805;RXRA_VDR{dimer}:-0.29063432527;ATF5_CREB3:-0.297855364751;ALX4:-0.307930867341;AR:-0.327027826859;GTF2I:-0.334680496278;PAX5:-0.346334594414;ETS1,2:-0.347400149546;SPI1:-0.353687831599;FOXM1:-0.355360832816;ZFP161:-0.372358246491;ATF6:-0.380758415745;SPIB:-0.388748993198;RFX1:-0.389367554348;CDC5L:-0.391395988842;SOX{8,9,10}:-0.393017979835;PRDM1:-0.399362477065;FOX{I1,J2}:-0.413860727888;bHLH_family:-0.419662416574;ZNF384:-0.425052574122;ATF4:-0.428449311397;GATA6:-0.430990432789;TAL1_TCF{3,4,12}:-0.444325025186;NFE2L2:-0.458788482738;NR6A1:-0.475052191855;MED-1{core}:-0.493115749526;STAT5{A,B}:-0.534844581828;TFDP1:-0.546664201709;ATF2:-0.54973663009;RFX2..5_RFXANK_RFXAP:-0.564611727485;SREBF1,2:-0.566457217796;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.579517148813;TFAP2B:-0.581077451243;MYB:-0.593459465672;CDX1,2,4:-0.600061799407;E2F1..5:-0.601144111604;HES1:-0.60243618655;NANOG{mouse}:-0.613038751154;PITX1..3:-0.625234094834;CRX:-0.626570959838;FOX{F1,F2,J1}:-0.630400618716;T:-0.642750093683;BPTF:-0.645015547673;PAX8:-0.651268749566;DBP:-0.653761234484;HNF4A_NR2F1,2:-0.65501186595;MEF2{A,B,C,D}:-0.66865284772;HOX{A6,A7,B6,B7}:-0.669812604809;HIC1:-0.67036758808;PRRX1,2:-0.678756579127;CUX2:-0.683395903917;MZF1:-0.685550370467;TGIF1:-0.685564841147;TOPORS:-0.695497558855;GATA4:-0.699164115858;TFAP4:-0.709772026407;ZBTB16:-0.720096450582;FOXL1:-0.765471945303;FOX{D1,D2}:-0.780902778132;CREB1:-0.795558033029;NR5A1,2:-0.810735708063;ZNF423:-0.835302069919;HOXA9_MEIS1:-0.855197887328;AHR_ARNT_ARNT2:-0.921401745221;RREB1:-0.932233602466;NKX6-1,2:-0.957427067188;ESR1:-0.969674772952;EGR1..3:-1.00529612903;STAT2,4,6:-1.03315898787;POU5F1:-1.04912495156;DMAP1_NCOR{1,2}_SMARC:-1.0609928452;FOXQ1:-1.13269105643;HBP1_HMGB_SSRP1_UBTF:-1.14894890924;POU2F1..3:-1.18473518621;PAX6:-1.1870195198;SOX5:-1.20169424821;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.28192428365;XBP1:-1.30802327431;PATZ1:-1.33134049433;FOXP1:-1.35341928318;PBX1:-1.35427625133;RORA:-1.35882596649;PAX3,7:-1.41695041239;ESRRA:-1.45805746596;BREu{core}:-1.58436443353;IKZF2:-1.6215430053;FOXD3:-1.76408328813
|comment=
|created_by=
|creation_date=
|def=
|has_quality=
|has_quality=
|id=FF:11929-125I3
|is_a=EFO:0002091;;FF:0000002;;FF:0000087;;FF:0000210
|is_a=EFO:0002091;;FF:0000002;;FF:0000087;;FF:0000210
|name=Mallassez-derived cells, donor2
|namespace=
|namespace=
|part_of=
|part_of=
|profile_cagescan=
|profile_hcage=CNhs13550,LSID1033,release012,COMPLETED
|profile_rnaseq=
|profile_srnaseq=
|rna_box=125
|rna_catalog_number=
|rna_concentration=2.17974
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=MZe6
|rna_od260/230=2.09
|rna_od260/280=2.07
|rna_position=I3
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=125I3
|rna_weight_ug=21.7974
|sample_age=29
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=epithelial cell rests of Malassez
|sample_collaboration=Mitsuhiro Ohshima (Nihon University School of Dentistry)
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=MZe6
|sample_ethnicity=
|sample_experimental_condition=
|sample_id=11929
|sample_note=
|sample_sex=female
|sample_species=
|sample_strain=
|sample_tissue=ANATOMICAL SYSTEM
|top_motifs=TP53:2.80914205801;TBX4,5:2.37828263609;NKX3-2:1.83977568216;TEF:1.8056156966;PAX4:1.42474871389;TEAD1:1.32950532179;PPARG:1.29162178043;ZEB1:1.2079460969;EVI1:1.07788914972;HAND1,2:1.05352844808;SNAI1..3:1.0096940471;ADNP_IRX_SIX_ZHX:1.00730469318;HSF1,2:0.962065096701;NKX2-3_NKX2-5:0.931692381447;NFIX:0.849710768293;TFCP2:0.822556814095;PDX1:0.774959749839;IRF7:0.774540799456;VSX1,2:0.771852435736;HMGA1,2:0.733550085535;ZNF238:0.725084959372;POU3F1..4:0.684043015349;ELK1,4_GABP{A,B1}:0.680527996792;GLI1..3:0.640868577972;FOS_FOS{B,L1}_JUN{B,D}:0.61768667376;FOXN1:0.616506003746;XCPE1{core}:0.590848457105;NR1H4:0.58984081989;NFIL3:0.577800749342;MYOD1:0.570085259105;ZIC1..3:0.564993204052;BACH2:0.554093807044;NANOG:0.54980933477;TLX2:0.543102784506;SP1:0.507536308056;MAZ:0.499318854079;POU1F1:0.497480964413;FOSL2:0.492830266617;ZNF148:0.489631395452;NKX2-2,8:0.474969404948;SOX17:0.47239568965;NKX2-1,4:0.458957378796;UFEwm:0.412289055086;SOX2:0.406238164946;ARID5B:0.402095492683;ONECUT1,2:0.369912029918;KLF4:0.361996900084;SPZ1:0.328589469817;NR3C1:0.320892864771;NKX3-1:0.319304855734;MAFB:0.296351163464;TLX1..3_NFIC{dimer}:0.278495867591;GCM1,2:0.212367680963;SMAD1..7,9:0.206526735337;TBP:0.193048732547;IKZF1:0.191001806378;HOX{A4,D4}:0.178566129575;GFI1B:0.170292605899;LMO2:0.151620043594;ZNF143:0.150467187327;NRF1:0.0831109435566;MYBL2:0.0767720392189;HLF:0.0632680901138;MTF1:0.0487603792357;NFATC1..3:0.0433770504579;TFAP2{A,C}:0.0395966442323;IRF1,2:0.0351926634326;HIF1A:0.0309940614223;LHX3,4:0.012367015289;HMX1:0.00965678572197;GFI1:0.00793873099197;LEF1_TCF7_TCF7L1,2:0.00662569791811;NFE2:-0.00536701622073;STAT1,3:-0.0121255209373;RBPJ:-0.0404028792318;FOXA2:-0.0462090782455;ZBTB6:-0.0599814969446;NFKB1_REL_RELA:-0.0606801066544;ALX1:-0.0767933944241;GTF2A1,2:-0.0791661261148;MTE{core}:-0.0841257166108;POU6F1:-0.0881998866156;OCT4_SOX2{dimer}:-0.102161020932;GZF1:-0.10224680257;PAX1,9:-0.103691722798;RUNX1..3:-0.149448317782;HOX{A5,B5}:-0.151080558409;NFE2L1:-0.166393562317;NHLH1,2:-0.169665478797;JUN:-0.179443026808;RXR{A,B,G}:-0.182157098784;SRF:-0.182677973616;HNF1A:-0.182901363719;REST:-0.188998367319;EBF1:-0.191892571617;PAX2:-0.200766692417;MYFfamily:-0.205825795033;EP300:-0.217303050066;AIRE:-0.222916736785;NFY{A,B,C}:-0.225603880368;CEBPA,B_DDIT3:-0.236601857068;ELF1,2,4:-0.238179792827;FOXO1,3,4:-0.265618698829;FOXP3:-0.278523305933;YY1:-0.280569623918;EN1,2:-0.282341975805;RXRA_VDR{dimer}:-0.29063432527;ATF5_CREB3:-0.297855364751;ALX4:-0.307930867341;AR:-0.327027826859;GTF2I:-0.334680496278;PAX5:-0.346334594414;ETS1,2:-0.347400149546;SPI1:-0.353687831599;FOXM1:-0.355360832816;ZFP161:-0.372358246491;ATF6:-0.380758415745;SPIB:-0.388748993198;RFX1:-0.389367554348;CDC5L:-0.391395988842;SOX{8,9,10}:-0.393017979835;PRDM1:-0.399362477065;FOX{I1,J2}:-0.413860727888;bHLH_family:-0.419662416574;ZNF384:-0.425052574122;ATF4:-0.428449311397;GATA6:-0.430990432789;TAL1_TCF{3,4,12}:-0.444325025186;NFE2L2:-0.458788482738;NR6A1:-0.475052191855;MED-1{core}:-0.493115749526;STAT5{A,B}:-0.534844581828;TFDP1:-0.546664201709;ATF2:-0.54973663009;RFX2..5_RFXANK_RFXAP:-0.564611727485;SREBF1,2:-0.566457217796;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.579517148813;TFAP2B:-0.581077451243;MYB:-0.593459465672;CDX1,2,4:-0.600061799407;E2F1..5:-0.601144111604;HES1:-0.60243618655;NANOG{mouse}:-0.613038751154;PITX1..3:-0.625234094834;CRX:-0.626570959838;FOX{F1,F2,J1}:-0.630400618716;T:-0.642750093683;BPTF:-0.645015547673;PAX8:-0.651268749566;DBP:-0.653761234484;HNF4A_NR2F1,2:-0.65501186595;MEF2{A,B,C,D}:-0.66865284772;HOX{A6,A7,B6,B7}:-0.669812604809;HIC1:-0.67036758808;PRRX1,2:-0.678756579127;CUX2:-0.683395903917;MZF1:-0.685550370467;TGIF1:-0.685564841147;TOPORS:-0.695497558855;GATA4:-0.699164115858;TFAP4:-0.709772026407;ZBTB16:-0.720096450582;FOXL1:-0.765471945303;FOX{D1,D2}:-0.780902778132;CREB1:-0.795558033029;NR5A1,2:-0.810735708063;ZNF423:-0.835302069919;HOXA9_MEIS1:-0.855197887328;AHR_ARNT_ARNT2:-0.921401745221;RREB1:-0.932233602466;NKX6-1,2:-0.957427067188;ESR1:-0.969674772952;EGR1..3:-1.00529612903;STAT2,4,6:-1.03315898787;POU5F1:-1.04912495156;DMAP1_NCOR{1,2}_SMARC:-1.0609928452;FOXQ1:-1.13269105643;HBP1_HMGB_SSRP1_UBTF:-1.14894890924;POU2F1..3:-1.18473518621;PAX6:-1.1870195198;SOX5:-1.20169424821;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.28192428365;XBP1:-1.30802327431;PATZ1:-1.33134049433;FOXP1:-1.35341928318;PBX1:-1.35427625133;RORA:-1.35882596649;PAX3,7:-1.41695041239;ESRRA:-1.45805746596;BREu{core}:-1.58436443353;IKZF2:-1.6215430053;FOXD3:-1.76408328813
}}
}}

Revision as of 15:05, 21 March 2012


Name:Mallassez-derived cells, donor2
Species:
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Additional information
Sample information
strainNA
tissueANATOMICAL SYSTEM
dev stageNA
sexfemale
age29
cell typeepithelial cell rests of Malassez
cell lineNA
companyNA
collaborationMitsuhiro Ohshima (Nihon University School of Dentistry)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberMZe6
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0



FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000066 (epithelial cell)
0000221 (ectodermal cell)
0000255 (eukaryotic cell)
0000548 (animal cell)
0002077 (ecto-epithelial cell)
0002159 (general ecto-epithelial cell)
0002166 (epithelial cell of Malassez)
0002321 (embryonic cell)
0002371 (somatic cell)

UBERON: Anatomy
0000033 (head)
0000061 (anatomical structure)
0000062 (organ)
0000075 (subdivision of skeletal system)
0000153 (anterior region of body)
0000465 (material anatomical entity)
0000467 (anatomical system)
0000468 (multi-cellular organism)
0000475 (organism subdivision)
0000479 (tissue)
0000480 (anatomical group)
0000481 (multi-tissue structure)
0000922 (embryo)
0000923 (germ layer)
0000924 (ectoderm)
0000926 (mesoderm)
0001062 (anatomical entity)
0001434 (skeletal system)
0001708 (jaw skeleton)
0002050 (embryonic structure)
0002204 (musculoskeletal system)
0002329 (somite)
0002342 (neural crest)
0002346 (neurectoderm)
0002532 (epiblast (generic))
0002539 (pharyngeal arch)
0003059 (presomitic mesoderm)
0003075 (neural plate)
0003077 (paraxial mesoderm)
0003089 (sclerotome)
0003104 (mesenchyme)
0003129 (skull)
0004120 (mesoderm-derived structure)
0004121 (ectoderm-derived structure)
0004288 (skeleton)
0004765 (skeletal element)
0005291 (embryonic tissue)
0005423 (developing anatomical structure)
0006598 (presumptive structure)
0007284 (presumptive neural plate)
0008814 (pharyngeal arch system)
0008816 (embryonic head)
0009142 (entire embryonic mesenchyme)

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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