Coexpression cluster:C911
From FANTOM5_SSTAR
Full id: C911_cord_CD8_Natural_mycosis_Basophils_Peripheral_CD4
Phase1 CAGE Peaks
| Hg19::chr16:27413488..27413517,+ | p1@IL21R |
| Hg19::chr16:27413524..27413547,+ | p2@IL21R |
| Hg19::chr16:27413589..27413601,+ | p5@IL21R |
| Hg19::chr16:27413815..27413889,+ | p4@IL21R |
| Hg19::chr17:45810594..45810608,+ | p1@TBX21 |
| Hg19::chr17:45810816..45810838,+ | p2@TBX21 |
| Hg19::chr3:193311668..193311697,- | p@chr3:193311668..193311697 - |
| Hg19::chr6:106968697..106968723,- | p@chr6:106968697..106968723 - |
| Hg19::chr6:90790583..90790604,- | p@chr6:90790583..90790604 - |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0046649 | lymphocyte activation | 0.00107147062286589 |
| GO:0045321 | leukocyte activation | 0.00107147062286589 |
| GO:0001775 | cell activation | 0.00107147062286589 |
| GO:0019977 | interleukin-21 binding | 0.00107147062286589 |
| GO:0001532 | interleukin-21 receptor activity | 0.00107147062286589 |
| GO:0048304 | positive regulation of isotype switching to IgG isotypes | 0.00267855827937379 |
| GO:0048302 | regulation of isotype switching to IgG isotypes | 0.00267855827937379 |
| GO:0048291 | isotype switching to IgG isotypes | 0.00267855827937379 |
| GO:0045830 | positive regulation of isotype switching | 0.00357130590335091 |
| GO:0045191 | regulation of isotype switching | 0.00420872932521112 |
| GO:0002208 | somatic diversification of immunoglobulins during immune response | 0.00420872932521112 |
| GO:0002381 | immunoglobulin production during immune response | 0.00420872932521112 |
| GO:0002204 | somatic recombination of immunoglobulin genes during immune response | 0.00420872932521112 |
| GO:0045190 | isotype switching | 0.00420872932521112 |
| GO:0016447 | somatic recombination of immunoglobulin gene segments | 0.00438219215402637 |
| GO:0016445 | somatic diversification of immunoglobulins | 0.00438219215402637 |
| GO:0002562 | somatic diversification of immune receptors via germline recombination within a single locus | 0.00438219215402637 |
| GO:0016444 | somatic cell DNA recombination | 0.00438219215402637 |
| GO:0002200 | somatic diversification of immune receptors | 0.00438219215402637 |
| GO:0030101 | natural killer cell activation | 0.00438219215402637 |
| GO:0050871 | positive regulation of B cell activation | 0.00438219215402637 |
| GO:0002377 | immunoglobulin production | 0.00438219215402637 |
| GO:0050864 | regulation of B cell activation | 0.00582115290182016 |
| GO:0002440 | production of molecular mediator of immune response | 0.00602471583669748 |
| GO:0002376 | immune system process | 0.00605459280668687 |
| GO:0004907 | interleukin receptor activity | 0.00700236669613786 |
| GO:0019965 | interleukin binding | 0.00793226354335589 |
| GO:0051251 | positive regulation of lymphocyte activation | 0.00927910822702546 |
| GO:0016064 | immunoglobulin mediated immune response | 0.00927910822702546 |
| GO:0019724 | B cell mediated immunity | 0.00927910822702546 |
| GO:0042113 | B cell activation | 0.0105325787794911 |
| GO:0004896 | hematopoietin/interferon-class (D200-domain) cytokine receptor activity | 0.0112655238259798 |
| GO:0002449 | lymphocyte mediated immunity | 0.0112655238259798 |
| GO:0002460 | adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains | 0.0112655238259798 |
| GO:0002250 | adaptive immune response | 0.0112655238259798 |
| GO:0051249 | regulation of lymphocyte activation | 0.0112655238259798 |
| GO:0002443 | leukocyte mediated immunity | 0.0112655238259798 |
| GO:0050865 | regulation of cell activation | 0.0112655238259798 |
| GO:0050776 | regulation of immune response | 0.0130476750734828 |
| GO:0019955 | cytokine binding | 0.0130476750734828 |
| GO:0002682 | regulation of immune system process | 0.0130476750734828 |
| GO:0002252 | immune effector process | 0.0140086525896998 |
| GO:0002520 | immune system development | 0.022614900670125 |
| GO:0006310 | DNA recombination | 0.0239171348972863 |
| GO:0051239 | regulation of multicellular organismal process | 0.0328435206715787 |
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
| Ontology term | p-value | n |
|---|---|---|
| hematopoietic system | 4.34e-28 | 102 |
| blood island | 4.34e-28 | 102 |
| hemolymphoid system | 1.01e-23 | 112 |
| bone marrow | 1.03e-16 | 80 |
| bone element | 1.41e-15 | 86 |
| connective tissue | 1.90e-15 | 375 |
| immune system | 4.43e-12 | 115 |
| skeletal element | 2.18e-11 | 101 |
| skeletal system | 2.18e-11 | 101 |
| blood | 4.02e-10 | 15 |
| haemolymphatic fluid | 4.02e-10 | 15 |
| organism substance | 4.02e-10 | 15 |
| adult organism | 1.36e-09 | 115 |
| lateral plate mesoderm | 7.99e-07 | 216 |
| Ontology term | p-value | n |
|---|---|---|
| hematologic cancer | 1.18e-08 | 51 |
| immune system cancer | 1.18e-08 | 51 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
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ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
No analysis results for this cluster
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
