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MCL coexpression mm9:733

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Phase1 CAGE Peaks

 Short description
Mm9::chr15:26291955..26291956,+p@chr15:26291955..26291956
+
Mm9::chr4:110256532..110256536,+p@chr4:110256532..110256536
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Mm9::chr4:110262019..110262022,+p@chr4:110262019..110262022
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Mm9::chr4:110325225..110325231,+p@chr4:110325225..110325231
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Mm9::chr4:151401911..151401934,+p@chr4:151401911..151401934
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Mm9::chr5:125342568..125342602,+p2@Zfp664
Mm9::chr5:92444356..92444360,-p@chr5:92444356..92444360
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Mm9::chr5:92471656..92471727,-p1@Cdkl2
Mm9::chr6:53018556..53018650,-p1@Jazf1
Mm9::chr7:97129757..97129776,+p@chr7:97129757..97129776
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0035098ESC/E(Z) complex0.0370123163137112
GO:0006349genetic imprinting0.0370123163137112
GO:0035097histone methyltransferase complex0.0370123163137112
GO:0005634nucleus0.0370123163137112
GO:0017053transcriptional repressor complex0.0370123163137112
GO:0031519PcG protein complex0.0370123163137112
GO:0043283biopolymer metabolic process0.0370123163137112
GO:0001739sex chromatin0.0370123163137112
GO:0000803sex chromosome0.0370123163137112
GO:0045120pronucleus0.0370123163137112
GO:0016571histone methylation0.0370123163137112
GO:0044451nucleoplasm part0.0383916747404711
GO:0010468regulation of gene expression0.0383916747404711
GO:0005720nuclear heterochromatin0.0383916747404711
GO:0005654nucleoplasm0.0383916747404711
GO:0042054histone methyltransferase activity0.0383916747404711
GO:0008213protein amino acid alkylation0.0383916747404711
GO:0006479protein amino acid methylation0.0383916747404711
GO:0004693cyclin-dependent protein kinase activity0.0383916747404711
GO:0000790nuclear chromatin0.0383916747404711
GO:0008276protein methyltransferase activity0.0383916747404711
GO:0031981nuclear lumen0.0383916747404711
GO:0043170macromolecule metabolic process0.0383916747404711
GO:0016570histone modification0.0383916747404711
GO:0000792heterochromatin0.0385558823317547
GO:0016569covalent chromatin modification0.0385558823317547
GO:0031974membrane-enclosed lumen0.038814610994547
GO:0043233organelle lumen0.038814610994547
GO:0043414biopolymer methylation0.038814610994547
GO:0040029regulation of gene expression, epigenetic0.038814610994547
GO:0032259methylation0.0393031576574954
GO:0010467gene expression0.0423687115763379
GO:0003714transcription corepressor activity0.0449295376650605
GO:0044238primary metabolic process0.0449295376650605
GO:0044237cellular metabolic process0.0449295376650605
GO:0043231intracellular membrane-bound organelle0.0449295376650605
GO:0043227membrane-bound organelle0.0449295376650605
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0464302673569337
GO:0044454nuclear chromosome part0.0464302673569337
GO:0044428nuclear part0.0491307095045673



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>



TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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