MCL coexpression mm9:1715
From FANTOM5_SSTAR
Phase1 CAGE Peaks
| Short description | |
|---|---|
| Mm9::chr18:37833957..37834019,+ | p2@Pcdhga11 p2@Pcdhga12 p2@Pcdhga3 p2@Pcdhga8 p2@Pcdhga9 p2@Pcdhgb6 p2@Pcdhgc3 p2@Pcdhgc4 p2@Pcdhgc5 |
| Mm9::chr18:37839908..37839961,+ | p1@Pcdhgb1 |
| Mm9::chr18:37885375..37885408,+ | p8@Pcdhga11 p8@Pcdhga12 p8@Pcdhga3 p8@Pcdhga8 p8@Pcdhga9 p8@Pcdhgb6 p8@Pcdhgc3 p8@Pcdhgc4 p8@Pcdhgc5 |
| Mm9::chr18:37915372..37915421,+ | p4@Pcdhga11 p4@Pcdhga12 p4@Pcdhga3 p4@Pcdhga8 p4@Pcdhga9 p4@Pcdhgb6 p4@Pcdhgc3 p4@Pcdhgc4 p4@Pcdhgc5 |
| Mm9::chr18:37925612..37925662,+ | p9@Pcdhga11 p9@Pcdhga12 p9@Pcdhga3 p9@Pcdhga8 p9@Pcdhga9 p9@Pcdhgb6 p9@Pcdhgc3 p9@Pcdhgc4 p9@Pcdhgc5 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0005624 | membrane fraction | 6.13115797569772e-06 |
| GO:0000267 | cell fraction | 6.13115797569772e-06 |
| GO:0022610 | biological adhesion | 6.13115797569772e-06 |
| GO:0007155 | cell adhesion | 6.13115797569772e-06 |
| GO:0005509 | calcium ion binding | 1.52263658322643e-05 |
| GO:0043169 | cation binding | 0.00342495576586387 |
| GO:0046872 | metal ion binding | 0.00387237709599195 |
| GO:0043167 | ion binding | 0.00387237709599195 |
| GO:0016339 | calcium-dependent cell-cell adhesion | 0.00559615603801538 |
| GO:0030427 | site of polarized growth | 0.00686518770334967 |
| GO:0030426 | growth cone | 0.00686518770334967 |
| GO:0005515 | protein binding | 0.00878908899684793 |
| GO:0016021 | integral to membrane | 0.0152531132314203 |
| GO:0031224 | intrinsic to membrane | 0.0152531132314203 |
| GO:0044425 | membrane part | 0.0196580359574477 |
| GO:0016020 | membrane | 0.0366972763483849 |
| GO:0005911 | intercellular junction | 0.0439313037485811 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| CNS neuron (sensu Vertebrata) | 2.99e-10 | 23 |
| neuroblast (sensu Vertebrata) | 2.99e-10 | 23 |
| ectodermal cell | 9.74e-09 | 44 |
| neurectodermal cell | 9.74e-09 | 44 |
| neural cell | 1.47e-08 | 43 |
| neuron | 9.23e-07 | 33 |
| neuronal stem cell | 9.23e-07 | 33 |
| neuroblast | 9.23e-07 | 33 |
| electrically signaling cell | 9.23e-07 | 33 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
