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MCL coexpression mm9:1003

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Phase1 CAGE Peaks

 Short description
Mm9::chr8:87229061..87229074,-p@chr8:87229061..87229074
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Mm9::chr8:87229089..87229101,-p@chr8:87229089..87229101
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Mm9::chr8:87245581..87245647,+p@chr8:87245581..87245647
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Mm9::chr8:87245682..87245722,-p@chr8:87245682..87245722
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Mm9::chr8:87247680..87247693,-p@chr8:87247680..87247693
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Mm9::chr8:87250407..87250441,-p@chr8:87250407..87250441
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Mm9::chr8:87251113..87251131,-p@chr8:87251113..87251131
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Mm9::chr8:87295789..87295807,-p@chr8:87295789..87295807
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
anatomical conduit3.79e-13122
neural tube3.30e-1252
neural rod3.30e-1252
future spinal cord3.30e-1252
neural keel3.30e-1252
tube3.49e-12114
cerebral cortex4.92e-1221
cerebral hemisphere4.92e-1221
pallium4.92e-1221
ecto-epithelium1.19e-1173
brain1.29e-1147
future brain1.29e-1147
regional part of nervous system1.44e-1154
regional part of brain2.25e-1146
ectoderm-derived structure6.32e-1195
ectoderm6.32e-1195
presumptive ectoderm6.32e-1195
central nervous system1.25e-1073
neurectoderm1.46e-1064
neural plate1.46e-1064
presumptive neural plate1.46e-1064
gray matter1.83e-1034
brain grey matter3.63e-1029
regional part of telencephalon3.63e-1029
telencephalon3.63e-1029
nervous system1.69e-0975
regional part of cerebral cortex1.76e-0917
anterior neural tube3.54e-0940
regional part of forebrain4.10e-0939
forebrain4.10e-0939
future forebrain4.10e-0939
pre-chordal neural plate1.60e-0849
structure with developmental contribution from neural crest1.99e-0892
occipital lobe5.44e-0710
visual cortex5.44e-0710
neocortex5.44e-0710


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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