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MCL coexpression mm9:1589

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:87391886..87391972,+p1@Sept4
Mm9::chr14:70930626..70930654,+p2@Lgi3
Mm9::chr14:70930656..70930686,+p1@Lgi3
Mm9::chr14:70930803..70930810,+p4@Lgi3
Mm9::chr3:102538826..102538875,+p2@Tspan2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0030382sperm mitochondrion organization and biogenesis0.0167616121174166
GO:0048240sperm capacitation0.0167616121174166



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
regional part of nervous system1.07e-1354
structure with developmental contribution from neural crest1.09e-1392
central nervous system6.10e-1373
tube9.25e-13114
anatomical conduit1.17e-12122
neural tube1.56e-1252
neural rod1.56e-1252
future spinal cord1.56e-1252
neural keel1.56e-1252
nervous system1.66e-1275
neurectoderm5.48e-1164
neural plate5.48e-1164
presumptive neural plate5.48e-1164
brain1.78e-1047
future brain1.78e-1047
regional part of brain4.87e-1046
ectoderm-derived structure6.19e-1095
ectoderm6.19e-1095
presumptive ectoderm6.19e-1095
ecto-epithelium1.50e-0973
multi-cellular organism1.59e-09333
lung7.31e-0914
respiratory tube7.31e-0914
respiration organ7.31e-0914
pair of lungs7.31e-0914
lung primordium7.31e-0914
lung bud7.31e-0914
epithelial bud5.53e-0817
anterior neural tube8.92e-0840
regional part of forebrain2.66e-0739
forebrain2.66e-0739
future forebrain2.66e-0739
epithelial fold5.30e-0720
pre-chordal neural plate5.83e-0749


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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