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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:158985493..158985535,+!p4@IFI16!2.13!201.10!IFI16;;chr12:66218598..66218645,+!p2@HMGA2!1.81!282.31!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.70!126.71!HMGA2;;chr2:102091144..102091183,-!p2@RFX8!1.60!38.52!RFX8;;chr12:66218836..66218888,+!p1@HMGA2!1.57!321.60!HMGA2;;chr2:102091566..102091581,-!p1@RFX8!1.50!30.93!RFX8;;chr1:158985469..158985489,+!p7@IFI16!1.45!31.96!IFI16;;chr17:46688334..46688385,-!p1@HOXB7!1.38!33.32!HOXB7;;chr12:66218183..66218209,+!p4@HMGA2!1.33!38.26!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.31!28.38!HMGA2;;chr1:170632285..170632309,+!p1@PRRX1!1.31!21.73!PRRX1;;chr12:66218573..66218596,+!p7@HMGA2!1.29!27.27!HMGA2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.29!18.49!HOXC5;;chr1:170633348..170633399,+!p2@PRRX1!1.25!22.58!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!1.25!16.62!HOXA3;;chr12:66218003..66218018,+!p9@HMGA2!1.24!19.68!HMGA2;;chr7:27196267..27196311,-!p1@HOXA7!1.24!16.53!HOXA7;;chr4:81118647..81118666,+!p1@PRDM8!1.23!21.05!PRDM8;;chr12:66218378..66218401,+!p6@HMGA2!1.16!20.79!HMGA2;;chr3:141121847..141121868,+!p5@ZBTB38!1.13!19.00!ZBTB38;;chr7:27205136..27205164,-!p1@HOXA9!1.13!12.53!HOXA9;;chr12:66218904..66218913,+!p11@HMGA2!1.13!12.44!HMGA2;;chrY:21906594..21906622,-!p1@KDM5D!1.13!12.44!KDM5D;;chr17:46703687..46703740,-!p1@HOXB9!1.11!11.84!HOXB9;;chr17:46682321..46682362,-!p1@HOXB6!1.11!11.76!HOXB6;;chr1:158979872..158979898,+!p3@IFI16!1.10!35.96!IFI16;;chr1:170632439..170632465,+!p11@PRRX1!1.10!11.50!PRRX1;;chr7:27205106..27205134,-!p2@HOXA9!1.09!11.16!HOXA9;;chr3:181429741..181429767,+!p2@SOX2!1.09!11.16!SOX2;;chr6:85473156..85473210,-!p2@TBX18!1.08!13.55!TBX18;;chr14:29235961..29236008,+!p1@FOXG1!1.08!11.08!FOXG1;;chr10:94449703..94449718,+!p1@HHEX!1.07!41.67!HHEX;;chr12:54393880..54393962,+!p1@HOXC9!1.07!10.65!HOXC9;;chr12:66357214..66357233,+!p13@HMGA2!1.06!10.48!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.05!17.38!TCF12;;chr6:45296048..45296082,+!p1@RUNX2!1.05!11.76!RUNX2;;chr1:158985457..158985468,+!p12@IFI16!1.05!10.14!IFI16;;chr3:181429704..181429722,+!p1@SOX2!1.05!10.14!SOX2;;chr1:170632723..170632739,+!p8@PRRX1!1.04!10.06!PRRX1;;chr4:4861385..4861398,+!p1@MSX1!1.03!29.14!MSX1;;chr2:223163706..223163730,-!p1@PAX3!1.03!9.71!PAX3;;chr7:35293685..35293718,-!p1@TBX20!1.03!9.63!TBX20;;chr1:170633262..170633285,+!p3@PRRX1!1.02!10.82!PRRX1;;chr12:66218923..66218934,+!p14@HMGA2!1.02!9.54!HMGA2;;chr5:72744594..72744609,-!p1@FOXD1!1.01!43.20!FOXD1;;chr12:85673977..85674015,+!p1@ALX1!1.01!9.20!ALX1;;chr11:65667846..65667868,-!p1@FOSL1!1.00!240.81!FOSL1;;chr7:14029283..14029311,-!p1@ETV1!1.00!48.49!ETV1;;chr15:83953397..83953425,-!p1@BNC1!1.00!10.40!BNC1;;chr17:46622440..46622477,-!p5@HOXB2!1.00!10.06!HOXB2;;chr1:170632115..170632136,+!p9@PRRX1!1.00!8.95!PRRX1;;chr5:72744445..72744466,-!p2@FOXD1!0.98!14.32!FOXD1;;chr12:66218443..66218461,+!p8@HMGA2!0.98!10.99!HMGA2;;chr1:158985553..158985574,+!p14@IFI16!0.98!8.52!IFI16;;chr9:126774018..126774055,+!p1@LHX2!0.97!8.44!LHX2;;chr7:19157248..19157268,-!p1@TWIST1!0.95!22.33!TWIST1;;chr3:168864315..168864339,-!p2@MECOM!0.94!12.95!MECOM;;chr7:27224842..27224872,-!p1@HOXA11!0.94!7.75!HOXA11;;chr1:170632477..170632506,+!p6@PRRX1!0.94!7.75!PRRX1;;chr12:26277956..26277980,-!p1@BHLHE41!0.93!28.21!BHLHE41;;chr12:54447599..54447630,+!p3@HOXC4!0.93!9.37!HOXC4;;chr1:170632959..170632987,+!p4@PRRX1!0.93!8.35!PRRX1;;chr2:74741569..74741620,+!p1@TLX2!0.91!7.16!TLX2;;chr3:138665937..138665968,-!p1@FOXL2!0.91!7.07!FOXL2;;chr2:239756671..239756732,+!p1@TWIST2!0.90!23.01!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!0.90!12.19!TWIST2;;chr1:158979792..158979814,+!p2@IFI16!0.89!67.32!IFI16;;chr19:20188776..20188826,+!p1@ZNF90!0.89!18.75!ZNF90;;chr13:79177674..79177701,-!p1@POU4F1!0.89!6.82!POU4F1;;chr6:34204672..34204692,+!p1@HMGA1!0.88!789.42!HMGA1;;chr6:34204921..34204939,+!p3@HMGA1!0.88!209.11!HMGA1;;chr7:19157043..19157088,-!p2@TWIST1!0.88!17.04!TWIST1;;chr3:141105705..141105770,+!p4@ZBTB38!0.88!8.10!ZBTB38;;chr2:102091590..102091601,-!p5@RFX8!0.88!6.65!RFX8;;chr3:37217736..37217753,-!p2@LRRFIP2!0.87!28.46!LRRFIP2;;chr12:66218152..66218174,+!p10@HMGA2!0.87!6.90!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.87!6.48!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!0.86!6.31!PRRX1;;chr11:65667884..65667895,-!p2@FOSL1!0.85!24.97!FOSL1;;chr1:158985536..158985545,+!p18@IFI16!0.85!6.05!IFI16;;chr8:49833948..49833973,-!p2@SNAI2!0.83!39.54!SNAI2;;chrX:101975643..101975683,+!p1@BHLHB9!0.83!13.46!BHLHB9;;chr2:200322654..200322707,-!p2@SATB2!0.83!8.69!SATB2;;chr3:147127142..147127168,+!p1@ZIC1!0.82!5.62!ZIC1;;chr1:170632137..170632172,+!p10@PRRX1!0.82!5.62!PRRX1;;chr10:94449675..94449694,+!p2@HHEX!0.81!15.68!HHEX;;chr7:27135591..27135658,-!p1@HOXA1!0.80!10.65!HOXA1;;chr1:170632683..170632696,+!p12@PRRX1!0.80!5.37!PRRX1;;chr2:176994408..176994492,+!p1@HOXD8!0.80!5.37!HOXD8;;chr3:141121820..141121838,+!p9@ZBTB38!0.80!5.37!ZBTB38;;chr2:102091478..102091490,-!p3@RFX8!0.80!5.28!RFX8;;chr3:185826764..185826803,-!p2@ETV5!0.79!20.79!ETV5;;chr17:46655704..46655718,-!p2@HOXB4!0.79!8.10!HOXB4;;chr17:46675420..46675465,-!p3@HOXB6!0.79!5.96!HOXB6;;chr12:66218420..66218439,+!p12@HMGA2!0.79!5.20!HMGA2;;chr13:79177703..79177729,-!p2@POU4F1!0.79!5.20!POU4F1;;chr9:16705069..16705086,-!p3@BNC2!0.79!5.11!BNC2;;chr10:31288398..31288455,-!p2@ZNF438!0.78!5.88!ZNF438;;chr11:31832658..31832681,-!p1@PAX6!0.77!4.94!PAX6;;chr7:27196217..27196246,-!p2@HOXA7!0.77!4.94!HOXA7;;chr3:147111198..147111225,+!p4@ZIC1!0.77!4.94!ZIC1;;chr12:66218469..66218477,+!p16@HMGA2!0.77!4.86!HMGA2;;chr2:101436564..101436647,+!p1@NPAS2!0.76!106.60!NPAS2;;chr1:158979851..158979865,+!p5@IFI16!0.76!11.16!IFI16;;chr9:132427972..132428056,+!p1@PRRX2!0.76!6.48!PRRX2;;chr19:22235279..22235301,+!p1@ZNF257!0.75!9.20!ZNF257;;chr12:54402745..54402788,+!p1@HOXC8!0.75!4.69!HOXC8;;chrY:2803415..2803468,+!p1@ZFY!0.75!4.69!ZFY;;chr15:42749722..42749739,-!p2@ZFP106!0.74!8.52!ZFP106;;chr3:138665969..138665993,-!p2@FOXL2!0.74!4.52!FOXL2;;chr5:178368186..178368238,+!p1@ZNF454!0.73!8.35!ZNF454;;chr12:26277929..26277955,-!p3@BHLHE41!0.73!6.56!BHLHE41;;chr3:168865194..168865245,-!p3@MECOM!0.73!5.79!MECOM;;chr3:157823517..157823562,-!p1@SHOX2!0.73!4.69!SHOX2;;chr16:67198633..67198671,+!p1@HSF4!0.73!4.35!HSF4;;chr17:46692457..46692484,-!p2@HOXB8!0.72!4.26!HOXB8;;chr2:102091514..102091528,-!p6@RFX8!0.72!4.26!RFX8;;chr2:172949484..172949522,+!p1@DLX1!0.72!4.26!DLX1;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.71!9.63!SOHLH2;;chr15:96875657..96875760,+!p14@NR2F2!0.71!7.16!NR2F2;;chr16:67198683..67198698,+!p2@HSF4!0.71!4.18!HSF4;;chr17:46691732..46691766,-!p4@HOXB8!0.71!4.18!HOXB8;;chr7:63505799..63505904,+!p1@ZNF727!0.71!4.09!ZNF727;;chr12:57914286..57914304,-!p1@DDIT3!0.70!166.17!DDIT3;;chr2:172967621..172967637,-!p1@DLX2!0.70!11.84!DLX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.69!3.92!HOXC5;;chr17:46688310..46688323,-!p4@HOXB7!0.69!3.92!HOXB7;;chr3:141150883..141150961,+!p6@ZBTB38!0.68!3.83!ZBTB38;;chr7:27195867..27195893,-!p3@HOXA7!0.68!3.75!HOXA7;;chr7:27213893..27213954,-!p1@HOXA10!0.68!3.75!HOXA10;;chr1:119530493..119530572,-!p1@TBX15!0.68!3.75!TBX15;;chr12:10870927..10870966,-!p5@CSDA!0.68!3.75!CSDA;;chr14:61116183..61116208,-!p1@SIX1!0.67!15.85!SIX1;;chr2:113993052..113993097,-!p2@PAX8!0.67!9.20!PAX8;;chr3:185826814..185826825,-!p3@ETV5!0.67!7.24!ETV5;;chr14:29236269..29236285,+!p3@FOXG1!0.67!3.66!FOXG1;;chr8:23564065..23564087,-!p1@NKX2-6!0.67!3.66!NKX2-6;;chr17:46806067..46806097,-!p1@HOXB13!0.67!3.66!HOXB13;;chr6:45390025..45390076,+!p2@RUNX2!0.66!9.46!RUNX2;;chr20:45142154..45142227,-!p1@ZNF334!0.66!7.75!ZNF334;;chr14:37131058..37131139,+!p1@PAX9!0.66!3.58!PAX9;;chr3:147111231..147111281,+!p3@ZIC1!0.66!3.58!ZIC1;;chr4:26323870..26323885,+!p13@RBPJ!0.66!3.58!RBPJ;;chr9:132427883..132427951,+!p2@PRRX2!0.66!3.58!PRRX2;;chr17:46675558..46675577,-!p2@HOXB6!0.66!3.58!HOXB6;;chr17:46622114..46622138,-!p4@HOXB2!0.65!5.62!HOXB2;;chr17:46703528..46703549,-!p5@HOXB9!0.65!3.49!HOXB9;;chr10:35484804..35484902,+!p2@CREM!0.64!14.74!CREM;;chr7:113726357..113726443,+!p1@FOXP2!0.64!6.22!FOXP2;;chr17:46622229..46622257,-!p6@HOXB2!0.64!4.09!HOXB2;;chr3:25470156..25470227,+!p2@RARB!0.64!3.41!RARB;;chr3:147110055..147110129,-!p1@ZIC4!0.64!3.32!ZIC4;;chr15:83953373..83953386,-!p2@BNC1!0.64!3.32!BNC1;;chr7:27205175..27205184,-!p3@HOXA9!0.64!3.32!HOXA9;;chr8:49833978..49833996,-!p1@SNAI2!0.63!80.27!SNAI2;;chr2:208394817..208394834,+!p3@CREB1!0.63!15.17!CREB1;;chr19:16435625..16435682,+!p1@KLF2!0.62!121.68!KLF2;;chrX:101975619..101975641,+!p2@BHLHB9!0.62!6.22!BHLHB9;;chr7:27183291..27183324,-!p1@HOXA5!0.62!3.15!HOXA5;;chr6:34205372..34205412,+!p5@HMGA1!0.60!17.89!HMGA1;;chr12:10875351..10875422,-!p4@CSDA!0.60!6.48!CSDA;;chr12:80085255..80085284,-!p9@PAWR!0.60!4.60!PAWR;;chr17:46622205..46622218,-!p3@HOXB2!0.60!3.58!HOXB2;;chr7:14028488..14028516,-!p2@ETV1!0.60!3.41!ETV1;;chr5:137801160..137801176,+!p1@EGR1!0.59!353.38!EGR1;;chr12:50478977..50479040,+!p1@SMARCD1!0.59!77.89!SMARCD1;;chr4:26322267..26322334,+!p3@RBPJ!0.59!7.92!RBPJ;;chr17:46687959..46688007,-!p2@HOXB7!0.59!4.26!HOXB7;;chr12:26277817..26277863,-!p2@BHLHE41!0.59!4.18!BHLHE41;;chr12:77459306..77459365,-!p1@E2F7!0.58!43.03!E2F7;;chr5:137804484..137804498,+!p2@EGR1!0.58!13.29!EGR1;;chr1:43148792..43148849,+!p2@YBX1!0.58!12.70!YBX1;;chr16:4323015..4323067,-!p2@TFAP4!0.58!8.95!TFAP4;;chr19:38042240..38042309,+!p2@ZNF540!0.58!4.69!ZNF540;;chr1:170633058..170633084,+!p5@PRRX1!0.58!2.81!PRRX1;;chr17:35767301..35767344,+!p2@TADA2A!0.57!7.58!TADA2A;;chr4:206390..206444,+!p1@ZNF876P!0.57!5.37!ZNF876P;;chr2:100721328..100721348,-!p4@AFF3!0.57!2.73!AFF3;;chr2:172950227..172950249,+!p2@DLX1!0.57!2.73!DLX1;;chr17:46703942..46703964,-!p4@HOXB9!0.57!2.73!HOXB9;;chr3:37217756..37217844,-!p1@LRRFIP2!0.56!211.84!LRRFIP2;;chr7:4815238..4815327,+!p1@KIAA0415!0.56!73.03!AP5Z1;;chr17:46655730..46655791,-!p1@HOXB4!0.56!7.58!HOXB4;;chr5:132299572..132299623,-!p6@AFF4!0.56!5.28!AFF4;;chr4:81104895..81104920,+!p2@PRDM8!0.56!4.35!PRDM8;;c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!0.17!8.35!ZNF26;;chr19:58400372..58400411,-!p1@ZNF814!0.17!6.22!ZNF814;;chr12:96588279..96588299,+!p4@ELK3!0.17!5.54!ELK3;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.17!5.37!TAL1;;chrX:83757450..83757485,-!p1@HDX!0.17!5.03!HDX;;chr3:71007344..71007348,-!p6@FOXP1!0.17!4.60!FOXP1;;chr2:217277480..217277505,+!p2@SMARCAL1!0.17!3.83!SMARCAL1;;chr19:37096194..37096235,+!p1@ZNF382!0.17!3.49!ZNF382;;chr18:74207147..74207183,-!p1@ZNF516!0.17!3.24!ZNF516;;chr6:43337255..43337329,-!p2@ZNF318!0.17!2.98!ZNF318;;chr3:48282536..48282586,+!p2@ZNF589!0.17!2.90!ZNF589;;chr12:104531785..104531812,-!p3@NFYB!0.17!2.73!NFYB;;chr6:41040923..41040952,+!p2@NFYA!0.17!2.73!NFYA;;chr13:45011349..45011391,-!p4@TSC22D1!0.17!2.47!TSC22D1;;chr14:24837368..24837401,+!p1@NFATC4!0.17!2.30!NFATC4;;chr11:62369204..62369217,-!p7@MTA2!0.17!2.13!MTA2;;chr19:19932586..19932598,-!p2@ZNF506!0.17!1.79!ZNF506;;chr18:3449821..3449860,+!p7@TGIF1!0.17!1.62!TGIF1;;chr3:150126904..150126958,+!p7@TSC22D2!0.17!1.53!TSC22D2;;chr4:38665659..38665670,+!p6@KLF3!0.17!1.53!KLF3;;chr2:28618532..28618610,+!p4@FOSL2!0.17!1.45!FOSL2;;chr5:132299037..132299048,-!p7@AFF4!0.17!1.45!AFF4;;chr15:57025812..57025819,-!p4@ZNF280D!0.17!1.19!ZNF280D;;chr19:52391220..52391251,-!p2@ZNF577!0.17!1.02!ZNF577;;chr5:88179518..88179569,-!p5@MEF2C!0.17!0.94!MEF2C;;chr17:38256858..38256866,-!p6@NR1D1!0.17!0.94!NR1D1;;chr19:13136130..13136165,+!p6@NFIX!0.17!0.94!NFIX;;chr10:21822984..21823023,+!p5@MLLT10!0.17!0.85!MLLT10;;chr14:64971323..64971333,-!p10@ZBTB25!0.17!0.68!ZBTB25;;chr16:69727150..69727178,+!p7@NFAT5!0.17!0.68!NFAT5;;chr5:124080203..124080258,-!p5@ZNF608!0.17!0.68!ZNF608;;chr3:71179785..71179810,-!p23@FOXP1!0.17!0.60!FOXP1;;chr14:69259772..69259790,-!p1@ZFP36L1!0.16!135.15!ZFP36L1;;chr7:27779729..27779819,+!p1@TAX1BP1!0.16!82.23!TAX1BP1;;chr18:48556573..48556640,+!p1@SMAD4!0.16!73.54!SMAD4;;chr1:8938709..8938720,-!p3@ENO1!0.16!62.80!ENO1;;chr20:48807875..48807982,+!p2@CEBPB!0.16!28.38!CEBPB;;chr19:6424783..6424802,-!p2@KHSRP!0.16!25.73!KHSRP;;chr1:78444778..78444800,-!p2@FUBP1!0.16!22.50!FUBP1;;chr19:24216213..24216314,+!p1@ZNF254!0.16!22.41!ZNF254;;chr20:39946279..39946356,-!p1@ZHX3!0.16!19.77!ZHX3;;chr2:27805880..27805967,+!p1@ZNF512!0.16!17.47!ZNF512;;chr18:32870260..32870293,+!p1@ZNF271!0.16!16.02!ZNF271;;chr16:75182376..75182458,+!p1@ZFP1!0.16!12.95!ZFP1;;chr2:217277169..217277266,+!p1@SMARCAL1!0.16!12.78!SMARCAL1;;chr17:7387524..7387597,-!p1@ZBTB4!0.16!11.76!ZBTB4;;chr12:48744642..48744733,-!p1@ZNF641!0.16!8.18!ZNF641;;chr8:10697329..10697365,-!p2@PINX1,p2@SOX7!0.16!7.84!SOX7;;chr11:62368696..62368759,-!p4@MTA2!0.16!7.33!MTA2;;chr7:99102865..99102894,+!p1@ZKSCAN5!0.16!5.71!ZKSCAN5;;chr19:12405645..12405685,-!p1@ZNF44!0.16!3.83!ZNF44;;chr4:10458982..10459007,-!p2@ZNF518B!0.16!3.49!ZNF518B;;chr12:19592493..19592524,+!p3@AEBP2!0.16!2.81!AEBP2;;chr1:67395982..67396015,+!p4@MIER1!0.16!2.73!MIER1;;chr10:35416142..35416169,+!p3@CREM!0.16!2.64!CREM;;chr8:146228226..146228264,-!p2@ZNF252!0.16!2.30!ZNF252P;;chr6:144289132..144289134,-!p3@PLAGL1!0.16!2.22!PLAGL1;;chr12:80084167..80084197,-!p5@PAWR!0.16!2.22!PAWR;;chr11:47279504..47279563,+!p1@NR1H3!0.16!2.13!NR1H3;;chr7:74072256..74072279,+!p3@GTF2I!0.16!1.79!GTF2I;;chr8:128750555..128750609,+!p5@MYC!0.16!1.79!MYC;;chr12:53614155..53614187,-!p3@RARG!0.16!1.70!RARG;;chr2:242576946..242576996,-!p4@THAP4!0.16!1.70!THAP4;;chr8:42698494..42698507,-!p3@THAP1!0.16!1.62!THAP1;;chr19:21265028..21265052,+!p2@ZNF714!0.16!1.53!ZNF714;;chr12:6798692..6798723,-!p5@ZNF384!0.16!1.28!ZNF384;;chr19:53039233..53039247,+!p2@ZNF808!0.16!1.11!ZNF808;;
|expression_enrichment_score=chr1:158985493..158985535,+!p4@IFI16!2.13!201.10!IFI16;;chr12:66218598..66218645,+!p2@HMGA2!1.81!282.31!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.70!126.71!HMGA2;;chr2:102091144..102091183,-!p2@RFX8!1.60!38.52!RFX8;;chr12:66218836..66218888,+!p1@HMGA2!1.57!321.60!HMGA2;;chr2:102091566..102091581,-!p1@RFX8!1.50!30.93!RFX8;;chr1:158985469..158985489,+!p7@IFI16!1.45!31.96!IFI16;;chr17:46688334..46688385,-!p1@HOXB7!1.38!33.32!HOXB7;;chr12:66218183..66218209,+!p4@HMGA2!1.33!38.26!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.31!28.38!HMGA2;;chr1:170632285..170632309,+!p1@PRRX1!1.31!21.73!PRRX1;;chr12:66218573..66218596,+!p7@HMGA2!1.29!27.27!HMGA2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.29!18.49!HOXC5;;chr1:170633348..170633399,+!p2@PRRX1!1.25!22.58!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!1.25!16.62!HOXA3;;chr12:66218003..66218018,+!p9@HMGA2!1.24!19.68!HMGA2;;chr7:27196267..27196311,-!p1@HOXA7!1.24!16.53!HOXA7;;chr4:81118647..81118666,+!p1@PRDM8!1.23!21.05!PRDM8;;chr12:66218378..66218401,+!p6@HMGA2!1.16!20.79!HMGA2;;chr3:141121847..141121868,+!p5@ZBTB38!1.13!19.00!ZBTB38;;chr7:27205136..27205164,-!p1@HOXA9!1.13!12.53!HOXA9;;chr12:66218904..66218913,+!p11@HMGA2!1.13!12.44!HMGA2;;chrY:21906594..21906622,-!p1@KDM5D!1.13!12.44!KDM5D;;chr17:46703687..46703740,-!p1@HOXB9!1.11!11.84!HOXB9;;chr17:46682321..46682362,-!p1@HOXB6!1.11!11.76!HOXB6;;chr1:158979872..158979898,+!p3@IFI16!1.10!35.96!IFI16;;chr1:170632439..170632465,+!p11@PRRX1!1.10!11.50!PRRX1;;chr7:27205106..27205134,-!p2@HOXA9!1.09!11.16!HOXA9;;chr3:181429741..181429767,+!p2@SOX2!1.09!11.16!SOX2;;chr6:85473156..85473210,-!p2@TBX18!1.08!13.55!TBX18;;chr14:29235961..29236008,+!p1@FOXG1!1.08!11.08!FOXG1;;chr10:94449703..94449718,+!p1@HHEX!1.07!41.67!HHEX;;chr12:54393880..54393962,+!p1@HOXC9!1.07!10.65!HOXC9;;chr12:66357214..66357233,+!p13@HMGA2!1.06!10.48!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.05!17.38!TCF12;;chr6:45296048..45296082,+!p1@RUNX2!1.05!11.76!RUNX2;;chr1:158985457..158985468,+!p12@IFI16!1.05!10.14!IFI16;;chr3:181429704..181429722,+!p1@SOX2!1.05!10.14!SOX2;;chr1:170632723..170632739,+!p8@PRRX1!1.04!10.06!PRRX1;;chr4:4861385..4861398,+!p1@MSX1!1.03!29.14!MSX1;;chr2:223163706..223163730,-!p1@PAX3!1.03!9.71!PAX3;;chr7:35293685..35293718,-!p1@TBX20!1.03!9.63!TBX20;;chr1:170633262..170633285,+!p3@PRRX1!1.02!10.82!PRRX1;;chr12:66218923..66218934,+!p14@HMGA2!1.02!9.54!HMGA2;;chr5:72744594..72744609,-!p1@FOXD1!1.01!43.20!FOXD1;;chr12:85673977..85674015,+!p1@ALX1!1.01!9.20!ALX1;;chr11:65667846..65667868,-!p1@FOSL1!1.00!240.81!FOSL1;;chr7:14029283..14029311,-!p1@ETV1!1.00!48.49!ETV1;;chr15:83953397..83953425,-!p1@BNC1!1.00!10.40!BNC1;;chr17:46622440..46622477,-!p5@HOXB2!1.00!10.06!HOXB2;;chr1:170632115..170632136,+!p9@PRRX1!1.00!8.95!PRRX1;;chr5:72744445..72744466,-!p2@FOXD1!0.98!14.32!FOXD1;;chr12:66218443..66218461,+!p8@HMGA2!0.98!10.99!HMGA2;;chr1:158985553..158985574,+!p14@IFI16!0.98!8.52!IFI16;;chr9:126774018..126774055,+!p1@LHX2!0.97!8.44!LHX2;;chr7:19157248..19157268,-!p1@TWIST1!0.95!22.33!TWIST1;;chr3:168864315..168864339,-!p2@MECOM!0.94!12.95!MECOM;;chr7:27224842..27224872,-!p1@HOXA11!0.94!7.75!HOXA11;;chr1:170632477..170632506,+!p6@PRRX1!0.94!7.75!PRRX1;;chr12:26277956..26277980,-!p1@BHLHE41!0.93!28.21!BHLHE41;;chr12:54447599..54447630,+!p3@HOXC4!0.93!9.37!HOXC4;;chr1:170632959..170632987,+!p4@PRRX1!0.93!8.35!PRRX1;;chr2:74741569..74741620,+!p1@TLX2!0.91!7.16!TLX2;;chr3:138665937..138665968,-!p1@FOXL2!0.91!7.07!FOXL2;;chr2:239756671..239756732,+!p1@TWIST2!0.90!23.01!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!0.90!12.19!TWIST2;;chr1:158979792..158979814,+!p2@IFI16!0.89!67.32!IFI16;;chr19:20188776..20188826,+!p1@ZNF90!0.89!18.75!ZNF90;;chr13:79177674..79177701,-!p1@POU4F1!0.89!6.82!POU4F1;;chr6:34204672..34204692,+!p1@HMGA1!0.88!789.42!HMGA1;;chr6:34204921..34204939,+!p3@HMGA1!0.88!209.11!HMGA1;;chr7:19157043..19157088,-!p2@TWIST1!0.88!17.04!TWIST1;;chr3:141105705..141105770,+!p4@ZBTB38!0.88!8.10!ZBTB38;;chr2:102091590..102091601,-!p5@RFX8!0.88!6.65!RFX8;;chr3:37217736..37217753,-!p2@LRRFIP2!0.87!28.46!LRRFIP2;;chr12:66218152..66218174,+!p10@HMGA2!0.87!6.90!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.87!6.48!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!0.86!6.31!PRRX1;;chr11:65667884..65667895,-!p2@FOSL1!0.85!24.97!FOSL1;;chr1:158985536..158985545,+!p18@IFI16!0.85!6.05!IFI16;;chr8:49833948..49833973,-!p2@SNAI2!0.83!39.54!SNAI2;;chrX:101975643..101975683,+!p1@BHLHB9!0.83!13.46!BHLHB9;;chr2:200322654..200322707,-!p2@SATB2!0.83!8.69!SATB2;;chr3:147127142..147127168,+!p1@ZIC1!0.82!5.62!ZIC1;;chr1:170632137..170632172,+!p10@PRRX1!0.82!5.62!PRRX1;;chr10:94449675..94449694,+!p2@HHEX!0.81!15.68!HHEX;;chr7:27135591..27135658,-!p1@HOXA1!0.80!10.65!HOXA1;;chr1:170632683..170632696,+!p12@PRRX1!0.80!5.37!PRRX1;;chr2:176994408..176994492,+!p1@HOXD8!0.80!5.37!HOXD8;;chr3:141121820..141121838,+!p9@ZBTB38!0.80!5.37!ZBTB38;;chr2:102091478..102091490,-!p3@RFX8!0.80!5.28!RFX8;;chr3:185826764..185826803,-!p2@ETV5!0.7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Line 45: Line 45:
|is_a=EFO:0002091;;FF:0000210;;FF:0103225
|is_a=EFO:0002091;;FF:0000210;;FF:0103225
|is_obsolete=
|is_obsolete=
|library_id=CNhs11245!CNhs11183
|library_id=CNhs11245
|library_id_phase_based=1:CNhs11183,CNhs11245
|library_id_phase_based=2:CNhs11245
|name=schwannoma cell line:HS-PSS
|name=schwannoma cell line:HS-PSS
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=NCig10058,,,
|profile_cagescan=NCig10058,,,
|profile_hcage=CNhs11245 & CNhs11183,LSID757,release008,COMPLETED
|profile_hcage="CNhs11245 & CNhs11183,LSID757,release008,COMPLETED"
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=",,,"
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Revision as of 16:40, 27 November 2014


Name:schwannoma cell line:HS-PSS
Species:Human (Homo sapiens)
Library ID:CNhs11245
Sample type:cell lines
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueperipheral nervous system
dev stageNA
sexmale
ageunknown
cell typeschwann cell
cell lineHS-PSS
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005495
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11245 CAGE DRX007996 DRR008868
CAGE DRX007997 DRR008869
Accession ID Hg19

Library idBAMCTSS
CNhs11245 DRZ000293 DRZ001678
DRZ000294 DRZ001679
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>dataNo results for this sample

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.178
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C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: "CNhs11245This sample isn't target for the analysis
library id: CNhs11183

Jaspar motifP-value
MA0002.20.0989
MA0003.10.343
MA0004.11.63753e-4
MA0006.10.258
MA0007.10.186
MA0009.10.956
MA0014.10.407
MA0017.10.369
MA0018.20.157
MA0019.10.118
MA0024.10.157
MA0025.10.148
MA0027.10.833
MA0028.17.1965e-6
MA0029.10.379
MA0030.10.115
MA0031.10.319
MA0035.20.00419
MA0038.10.689
MA0039.20.0933
MA0040.10.786
MA0041.10.235
MA0042.10.258
MA0043.10.772
MA0046.10.141
MA0047.20.37
MA0048.10.0327
MA0050.10.00754
MA0051.10.0354
MA0052.10.0411
MA0055.10.00685
MA0057.10.177
MA0058.11.75281e-9
MA0059.10.00585
MA0060.10.565
MA0061.10.0168
MA0062.24.82185e-6
MA0065.20.842
MA0066.10.308
MA0067.10.0995
MA0068.10.625
MA0069.10.593
MA0070.10.239
MA0071.10.413
MA0072.10.759
MA0073.10.693
MA0074.10.746
MA0076.11.86872e-5
MA0077.10.187
MA0078.10.0957
MA0079.20.00789
MA0080.20.00154
MA0081.10.848
MA0083.10.533
MA0084.10.668
MA0087.10.957
MA0088.10.0224
MA0090.10.0658
MA0091.10.0754
MA0092.10.0617
MA0093.11.00656e-5
MA0099.22.68707e-13
MA0100.10.11
MA0101.10.374
MA0102.20.838
MA0103.10.011
MA0104.24.10449e-4
MA0105.10.31
MA0106.10.0679
MA0107.10.0731
MA0108.21.31147e-4
MA0111.10.74
MA0112.20.0051
MA0113.10.0801
MA0114.10.803
MA0115.10.724
MA0116.10.0364
MA0117.10.597
MA0119.10.226
MA0122.10.649
MA0124.10.482
MA0125.10.396
MA0131.10.435
MA0135.10.367
MA0136.10.854
MA0137.20.539
MA0138.20.0575
MA0139.10.769
MA0140.10.178
MA0141.10.301
MA0142.10.0463
MA0143.10.574
MA0144.10.248
MA0145.10.108
MA0146.10.316
MA0147.10.00541
MA0148.10.581
MA0149.10.137
MA0150.10.0724
MA0152.10.826
MA0153.10.883
MA0154.10.0328
MA0155.10.154
MA0156.10.0138
MA0157.10.224
MA0159.10.731
MA0160.10.292
MA0162.10.799
MA0163.10.172
MA0164.10.154
MA0258.10.0059
MA0259.10.0668



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: "CNhs11245This sample isn't target for the analysis
library id: CNhs11183

Novel motifP-value
10.896
100.0761
1000.529
1010.72
1020.748
1030.703
1040.725
1050.744
1068.98319e-4
1070.367
1080.376
1090.693
110.703
1100.55
1110.16
1120.203
1130.0401
1140.722
1150.0956
1160.212
1170.457
1180.87
1190.0392
120.522
1200.468
1210.436
1220.733
1230.656
1240.954
1250.387
1260.199
1270.489
1280.0105
1290.396
130.525
1300.245
1310.307
1320.801
1330.272
1340.197
1350.537
1360.942
1370.837
1380.946
1390.284
140.407
1400.33
1410.425
1420.018
1430.417
1440.838
1450.439
1460.492
1470.565
1480.201
1490.0725
150.916
1500.794
1510.427
1520.0409
1530.421
1540.994
1550.018
1560.457
1570.626
1580.492
1590.184
160.408
1600.248
1610.509
1620.71
1630.696
1640.139
1650.379
1660.877
1670.676
1680.241
1690.117
170.476
180.175
190.16
20.0921
200.18
210.347
220.136
230.263
240.217
250.258
260.502
270.134
280.929
290.366
30.871
300.243
310.214
320.00246
330.344
340.373
350.872
360.0635
370.868
380.544
390.566
40.0335
400.728
410.917
420.697
430.349
440.196
450.131
460.397
470.934
480.961
490.267
50.125
500.916
510.41
520.0549
530.758
540.324
550.354
560.898
570.533
580.071
590.103
60.539
600.0512
610.785
620.0411
630.538
640.52
650.308
660.219
670.873
680.546
690.447
70.276
700.112
710.874
720.486
730.588
740.304
750.925
760.0918
770.301
780.386
790.417
80.174
800.727
810.827
820.0726
830.413
840.538
850.105
860.951
870.569
880.804
890.0176
90.502
900.0919
910.529
920.216
930.469
940.652
950.234
960.705
970.99
980.494
990.423



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: "CNhs11245
library id: CNhs11183


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0002573 (Schwann cell)
0000125 (glial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
14566 (disease of cellular proliferation)

UBERON: Anatomy
0000468 (multi-cellular organism)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000010 (peripheral nervous system)
0001016 (nervous system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0103225 (neurilemoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)