FF:11421-118F8: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005662 | ||
| | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005662 | ||
|accession_numbers=CAGE;DRX008314;DRR009186;DRZ000611;DRZ001996;DRZ011961;DRZ013346 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037066;DRR041432;DRZ007074 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000325,CL:0000240,CL:0000311,CL:0000079,CL:0000312,CL:0000237,CL:0000362,CL:0002159,CL:0000255,CL:0002077 | |||
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|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000082 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.47!291.23!SOX15;;chr3:111314186..111314204,-!p1@ZBED2!2.08!118.93!ZBED2;;chr15:83953397..83953425,-!p1@BNC1!1.90!90.28!BNC1;;chr3:189507432..189507459,+!p1@TP63!1.88!74.99!TP63;;chr11:34642612..34642646,+!p1@EHF!1.83!67.25!EHF;;chr1:209979411..209979433,-!p2@IRF6!1.77!57.90!IRF6;;chr1:209979467..209979494,-!p1@IRF6!1.74!60.02!IRF6;;chr12:54785074..54785122,-!p2@ZNF385A!1.57!54.89!ZNF385A;;chr12:54785054..54785072,-!p4@ZNF385A!1.53!37.30!ZNF385A;;chr6:10415276..10415341,-!p2@TFAP2A!1.48!35.79!TFAP2A;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.45!27.44!ZBED1;;chr17:7492684..7492778,-!p2@SOX15!1.43!53.58!SOX15;;chr7:27205106..27205134,-!p2@HOXA9!1.35!21.41!HOXA9;;chr6:10412600..10412637,-!p1@TFAP2A!1.32!33.07!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.31!19.40!IRX2;;chr12:66218255..66218304,+!p3@HMGA2!1.28!48.25!HMGA2;;chr6:10415484..10415508,-!p3@TFAP2A!1.26!17.29!TFAP2A;;chr15:101069113..101069169,-!p1@CERS3!1.26!17.09!CERS3;;chr7:27205136..27205164,-!p1@HOXA9!1.25!16.79!HOXA9;;chr13:73633131..73633149,+!p1@KLF5!1.23!169.19!KLF5;;chr3:111314230..111314241,-!p2@ZBED2!1.23!16.08!ZBED2;;chr1:6479968..6479986,-!p1@HES2!1.20!14.98!HES2;;chr6:10419768..10419819,-!p6@TFAP2A!1.20!14.78!TFAP2A;;chr11:65667884..65667895,-!p2@FOSL1!1.18!54.29!FOSL1;;chr11:65686802..65686818,+!p6@DRAP1!1.18!24.43!DRAP1;;chr5:72744594..72744609,-!p1@FOXD1!1.17!62.83!FOXD1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.10!102.54!PPP1R13L;;chr20:55204351..55204377,+!p1@TFAP2C!1.10!14.78!TFAP2C;;chr8:102504651..102504683,+!p1@GRHL2!1.10!11.66!GRHL2;;chr15:83953373..83953386,-!p2@BNC1!1.09!11.36!BNC1;;chr17:41623692..41623715,-!p1@ETV4!1.08!47.75!ETV4;;chr6:1312325..1312340,+!p1@FOXQ1!1.06!17.39!FOXQ1;;chr8:10588010..10588030,-!p1@SOX7!1.05!10.25!SOX7;;chr2:46524897..46524911,+!p2@EPAS1!1.03!27.75!EPAS1;;chr12:27485762..27485776,+!p3@ARNTL2!1.00!24.83!ARNTL2;;chr8:49833978..49833996,-!p1@SNAI2!0.98!178.94!SNAI2;;chr11:65686732..65686756,+!p2@DRAP1!0.98!37.50!DRAP1;;chr5:1887070..1887114,-!p1@IRX4!0.98!8.44!IRX4;;chr2:122042770..122042785,-!p1@TFCP2L1!0.96!8.14!TFCP2L1;;chr11:34642656..34642667,+!p2@EHF!0.96!8.04!EHF;;chr8:49833948..49833973,-!p2@SNAI2!0.95!52.07!SNAI2;;chr12:66218598..66218645,+!p2@HMGA2!0.95!37.50!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!0.94!11.46!HMGA2;;chr11:65667846..65667868,-!p1@FOSL1!0.92!199.85!FOSL1;;chr12:66218183..66218209,+!p4@HMGA2!0.92!14.48!HMGA2;;chr1:209979449..209979460,-!p3@IRF6!0.92!7.24!IRF6;;chr20:18038521..18038571,-!p1@OVOL2!0.89!6.84!OVOL2;;chr4:299227..299272,-!p1@ZNF732!0.89!6.74!ZNF732;;chr17:41623009..41623053,-!p4@ETV4!0.87!10.66!ETV4;;chr20:50721803..50721857,-!p2@ZFP64!0.86!10.05!ZFP64;;chr17:70117153..70117174,+!p1@SOX9!0.85!67.25!SOX9;;chr3:32023232..32023273,+!p1@ZNF860!0.85!8.95!ZNF860;;chr4:57547454..57547469,-!p1@HOPX!0.85!6.13!HOPX;;chr7:27135591..27135658,-!p1@HOXA1!0.84!11.96!HOXA1;;chr2:63277948..63277974,+!p1@OTX1!0.84!5.93!OTX1;;chr14:21566731..21566836,-!p1@ZNF219!0.81!63.63!ZNF219;;chr5:72744445..72744466,-!p2@FOXD1!0.81!9.35!FOXD1;;chr5:2751785..2751808,-!p2@IRX2!0.81!5.43!IRX2;;chr8:128748308..128748324,+!p2@MYC!0.79!157.73!MYC;;chr17:45928443..45928473,-!p2@SP6!0.77!4.93!SP6;;chr12:27485823..27485868,+!p2@ARNTL2!0.76!21.21!ARNTL2;;chr12:54378923..54378966,+!p1@HOXC10!0.76!4.72!HOXC10;;chr17:80797886..80797906,-!p1@ZNF750!0.76!4.72!ZNF750;;chr1:158979792..158979814,+!p2@IFI16!0.73!46.24!IFI16;;chr12:48298765..48298783,-!p2@VDR!0.73!9.85!VDR;;chr3:189507460..189507471,+!p3@TP63!0.73!4.42!TP63;;chr11:65554528..65554546,+!p1@OVOL1!0.72!4.22!OVOL1;;chr12:54332608..54332636,+!p1@HOXC13!0.71!4.12!HOXC13;;chr5:1887052..1887065,-!p2@IRX4!0.71!4.12!IRX4;;chr12:48298785..48298828,-!p1@VDR!0.70!23.72!VDR;;chr1:209979375..209979386,-!p4@IRF6!0.70!4.02!IRF6;;chr20:55205825..55205847,+!p2@TFAP2C!0.70!4.02!TFAP2C;;chr2:208030647..208030689,-!p1@KLF7!0.69!37.40!KLF7;;chr12:54380036..54380091,+!p4@HOXC10!0.69!3.92!HOXC10;;chr3:5021026..5021035,+!p5@BHLHE40!0.68!4.83!BHLHE40;;chr2:60778035..60778060,-!p4@BCL11A!0.68!4.72!BCL11A;;chr10:8095593..8095625,+!p3@GATA3!0.68!4.62!GATA3;;chr17:41623075..41623101,-!p9@ETV4!0.68!4.52!ETV4;;chr11:65668011..65668020,-!p3@FOSL1!0.68!3.82!FOSL1;;chr6:34204672..34204692,+!p1@HMGA1!0.67!486.26!HMGA1;;chr12:66218378..66218401,+!p6@HMGA2!0.67!6.13!HMGA2;;chr17:41623667..41623682,-!p8@ETV4!0.67!4.02!ETV4;;chr15:83953474..83953483,-!p3@BNC1!0.67!3.72!BNC1;;chr10:8100691..8100732,+!p5@GATA3!0.67!3.72!GATA3;;chr12:27485785..27485816,+!p1@ARNTL2!0.66!28.75!ARNTL2;;chr17:46132044..46132080,+!p4@NFE2L1!0.66!3.62!NFE2L1;;chr6:10412576..10412599,-!p5@TFAP2A!0.66!3.62!TFAP2A;;chr17:7492504..7492520,-!p3@SOX15!0.65!3.42!SOX15;;chr11:120107344..120107351,+!p1@POU2F3!0.64!4.22!POU2F3;;chr6:10419824..10419840,-!p9@TFAP2A!0.64!3.32!TFAP2A;;chr3:189507523..189507535,+!p5@TP63!0.62!3.22!TP63;;chr19:22817119..22817145,+!p1@ZNF492!0.60!5.53!ZNF492;;chr17:41623259..41623278,-!p7@ETV4!0.60!3.62!ETV4;;chr5:50679228..5067928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| |||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000312;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000362;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002159;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001003;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416 | |||
|ffid_belonging_in_development=CL:0000357,CL:0000114,CL:0000221 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 66: | Line 43: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|is_a=EFO:0002091;;FF: | |hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor3.CNhs12031.11421-118F8.hg19.nobarcode.bam | ||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor3.CNhs12031.11421-118F8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor3.CNhs12031.11421-118F8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor3.CNhs12031.11421-118F8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor3.CNhs12031.11421-118F8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11421-118F8 | |||
|is_a=EFO:0002091;;FF:0000082 | |||
|is_obsolete= | |||
|library_id=CNhs12031 | |||
|library_id_phase_based=2:CNhs12031 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11421 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.GTTTCG.11421 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11421 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.GTTTCG.11421 | |||
|name=Keratinocyte - epidermal, donor3 | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs12031,LSID837,release011,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=SRhi10005,,, | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=118 | |||
|rna_catalog_number=CA102-R10a | |||
|rna_concentration=1 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0 | |||
|rna_lot_number=2568 | |||
|rna_od260/230= | |||
|rna_od260/280= | |||
|rna_position=F8 | |||
|rna_rin= | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=118F8 | |||
|rna_weight_ug=10 | |||
|rnaseq_library_id=SRhi10005.GTTTCG | |||
|sample_age=46 | |||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |||
|sample_cell_line= | |||
|sample_cell_lot=N/A | |||
|sample_cell_type=keratinocyte | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company=Cell Applications | |||
|sample_description= | |||
|sample_dev_stage=46 years old adult | |||
|sample_disease= | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity=C | |||
|sample_experimental_condition= | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.30021644506592e-264!GO:0043226;organelle;2.08755091646333e-209!GO:0043229;intracellular organelle;8.47117795164084e-209!GO:0005737;cytoplasm;2.50306022505289e-201!GO:0043231;intracellular membrane-bound organelle;2.03070268102638e-197!GO:0043227;membrane-bound organelle;3.68468976882067e-197!GO:0044422;organelle part;1.95000742404385e-159!GO:0044446;intracellular organelle part;5.44728786306545e-158!GO:0044444;cytoplasmic part;6.51878159108212e-131!GO:0032991;macromolecular complex;4.26477164785352e-110!GO:0030529;ribonucleoprotein complex;1.48453089465625e-93!GO:0044238;primary metabolic process;1.56779571388336e-91!GO:0044237;cellular metabolic process;3.63473062898711e-91!GO:0043170;macromolecule metabolic process;3.41722258644381e-82!GO:0005634;nucleus;3.86205074579774e-81!GO:0044428;nuclear part;2.93406060301497e-76!GO:0043233;organelle lumen;6.11736025222856e-75!GO:0031974;membrane-enclosed lumen;6.11736025222856e-75!GO:0005515;protein binding;2.17304240993022e-73!GO:0003723;RNA binding;4.68751627288758e-72!GO:0005739;mitochondrion;2.72122356390543e-71!GO:0005840;ribosome;9.81101438645231e-57!GO:0043234;protein complex;1.29549346955672e-55!GO:0006412;translation;3.28257266271412e-55!GO:0019538;protein metabolic process;8.84987085628172e-54!GO:0031090;organelle membrane;2.88092612274007e-52!GO:0006396;RNA processing;4.23616426776116e-52!GO:0016043;cellular component organization and biogenesis;1.62566040901788e-49!GO:0003735;structural constituent of ribosome;1.99275277067254e-49!GO:0009058;biosynthetic process;2.1285253748053e-48!GO:0044429;mitochondrial part;5.10237952726233e-48!GO:0043228;non-membrane-bound organelle;1.84819703999359e-47!GO:0043232;intracellular non-membrane-bound organelle;1.84819703999359e-47!GO:0043283;biopolymer metabolic process;5.87609115805556e-47!GO:0044267;cellular protein metabolic process;1.61144757643413e-46!GO:0044260;cellular macromolecule metabolic process;4.8175287123352e-46!GO:0031981;nuclear lumen;2.63567787422143e-45!GO:0044249;cellular biosynthetic process;1.47417587474154e-44!GO:0015031;protein transport;2.24264960869531e-44!GO:0033036;macromolecule localization;3.9670247181793e-44!GO:0031967;organelle envelope;6.50274319083211e-44!GO:0031975;envelope;1.7651460521529e-43!GO:0033279;ribosomal subunit;3.03583828021159e-42!GO:0005829;cytosol;1.05908990099093e-41!GO:0009059;macromolecule biosynthetic process;3.07421199887777e-41!GO:0045184;establishment of protein localization;3.72710507006895e-41!GO:0008104;protein localization;7.93870870323186e-41!GO:0065003;macromolecular complex assembly;4.15549610513673e-39!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.50508827947522e-38!GO:0016071;mRNA metabolic process;4.1835799293459e-38!GO:0010467;gene expression;5.45300443168698e-38!GO:0046907;intracellular transport;1.58503275087192e-37!GO:0008380;RNA splicing;3.39679597170951e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.72051343867785e-36!GO:0006996;organelle organization and biogenesis;8.25170028078089e-36!GO:0022607;cellular component assembly;7.3532211201491e-34!GO:0006259;DNA metabolic process;4.0671173274105e-33!GO:0006397;mRNA processing;5.27500236299773e-33!GO:0005740;mitochondrial envelope;2.18238655012945e-30!GO:0006886;intracellular protein transport;2.96954324920677e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.46323557134249e-30!GO:0031966;mitochondrial membrane;4.26780306002568e-28!GO:0019866;organelle inner membrane;5.22756459188061e-27!GO:0007049;cell cycle;5.22756459188061e-27!GO:0005681;spliceosome;9.90648128530185e-27!GO:0005654;nucleoplasm;2.82117806963657e-26!GO:0000166;nucleotide binding;4.27821251965005e-26!GO:0051649;establishment of cellular localization;7.49851008178423e-25!GO:0005743;mitochondrial inner membrane;8.53919658057602e-25!GO:0051641;cellular localization;9.07264138401976e-25!GO:0044445;cytosolic part;1.28079178464903e-24!GO:0016462;pyrophosphatase activity;9.93600036058572e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.37152320161128e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;2.06864206725163e-22!GO:0015934;large ribosomal subunit;2.3188672695558e-22!GO:0012505;endomembrane system;2.46629904903539e-22!GO:0006119;oxidative phosphorylation;2.15475624583181e-21!GO:0005730;nucleolus;2.55803212227643e-21!GO:0017111;nucleoside-triphosphatase activity;3.56947633737656e-21!GO:0044455;mitochondrial membrane part;4.29679506988795e-21!GO:0031980;mitochondrial lumen;5.35402645980813e-21!GO:0005759;mitochondrial matrix;5.35402645980813e-21!GO:0015935;small ribosomal subunit;6.28829604311207e-21!GO:0044451;nucleoplasm part;6.30979540027929e-21!GO:0016874;ligase activity;1.50955951705848e-20!GO:0003676;nucleic acid binding;1.67316123471116e-20!GO:0000278;mitotic cell cycle;3.60804427183474e-20!GO:0022402;cell cycle process;3.62542433976637e-20!GO:0006974;response to DNA damage stimulus;1.56085267671286e-19!GO:0006457;protein folding;1.69471205904525e-19!GO:0048770;pigment granule;1.94195361038973e-19!GO:0042470;melanosome;1.94195361038973e-19!GO:0022618;protein-RNA complex assembly;2.67647590949972e-19!GO:0005783;endoplasmic reticulum;6.18346833830641e-19!GO:0032553;ribonucleotide binding;8.26924634939337e-19!GO:0032555;purine ribonucleotide binding;8.26924634939337e-19!GO:0017076;purine nucleotide binding;1.50287228589693e-18!GO:0044265;cellular macromolecule catabolic process;6.544296662546e-18!GO:0043285;biopolymer catabolic process;9.30156304927633e-18!GO:0005694;chromosome;1.592433131852e-17!GO:0042254;ribosome biogenesis and assembly;2.61993328885892e-17!GO:0006512;ubiquitin cycle;2.88460618020558e-17!GO:0000502;proteasome complex (sensu Eukaryota);5.51847212510904e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;7.83534365954316e-17!GO:0009057;macromolecule catabolic process;1.04098892543972e-16!GO:0019941;modification-dependent protein catabolic process;1.2218438367235e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.2218438367235e-16!GO:0005761;mitochondrial ribosome;1.30685406503349e-16!GO:0000313;organellar ribosome;1.30685406503349e-16!GO:0006281;DNA repair;1.44186841306017e-16!GO:0044257;cellular protein catabolic process;1.96580662205358e-16!GO:0006511;ubiquitin-dependent protein catabolic process;2.2915514227074e-16!GO:0005746;mitochondrial respiratory chain;4.91434499779863e-16!GO:0000087;M phase of mitotic cell cycle;4.91434499779863e-16!GO:0051186;cofactor metabolic process;9.43283366522629e-16!GO:0007067;mitosis;9.77408993406671e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.07650224687316e-15!GO:0044427;chromosomal part;1.2319955194007e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.2413891626298e-15!GO:0032559;adenyl ribonucleotide binding;1.28888816768006e-15!GO:0043412;biopolymer modification;1.2992458865869e-15!GO:0005524;ATP binding;1.3259057784732e-15!GO:0006605;protein targeting;2.06084617124366e-15!GO:0008135;translation factor activity, nucleic acid binding;2.22361339378301e-15!GO:0016070;RNA metabolic process;2.47085768210394e-15!GO:0030163;protein catabolic process;2.49926675033645e-15!GO:0030554;adenyl nucleotide binding;3.29589231114855e-15!GO:0008134;transcription factor binding;3.7899496884719e-15!GO:0044432;endoplasmic reticulum part;5.56289010100688e-15!GO:0044248;cellular catabolic process;7.25119093169509e-15!GO:0005794;Golgi apparatus;8.15152035341057e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.1563889048957e-14!GO:0003954;NADH dehydrogenase activity;1.1563889048957e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.1563889048957e-14!GO:0022403;cell cycle phase;1.25628765025691e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.27227743257354e-14!GO:0005635;nuclear envelope;3.60711060649784e-14!GO:0051301;cell division;3.63353020562706e-14!GO:0051082;unfolded protein binding;3.96957970374669e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;5.15016048216868e-14!GO:0000375;RNA splicing, via transesterification reactions;5.15016048216868e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.15016048216868e-14!GO:0006260;DNA replication;5.36866782080553e-14!GO:0006464;protein modification process;5.59697167365978e-14!GO:0051276;chromosome organization and biogenesis;5.79076369967012e-14!GO:0012501;programmed cell death;7.15079504378893e-14!GO:0006915;apoptosis;1.18953597021689e-13!GO:0048193;Golgi vesicle transport;1.80046079833289e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.73872949572143e-13!GO:0009719;response to endogenous stimulus;3.16077828034007e-13!GO:0044453;nuclear membrane part;4.44891949946809e-13!GO:0031965;nuclear membrane;5.12245080809131e-13!GO:0006732;coenzyme metabolic process;6.23574708011796e-13!GO:0042775;organelle ATP synthesis coupled electron transport;6.64463860866127e-13!GO:0042773;ATP synthesis coupled electron transport;6.64463860866127e-13!GO:0030964;NADH dehydrogenase complex (quinone);8.34967813238484e-13!GO:0045271;respiratory chain complex I;8.34967813238484e-13!GO:0005747;mitochondrial respiratory chain complex I;8.34967813238484e-13!GO:0006461;protein complex assembly;9.69342240734532e-13!GO:0043687;post-translational protein modification;9.98088478484842e-13!GO:0000279;M phase;1.32889279363172e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.27035775873087e-12!GO:0008219;cell death;2.27035775873087e-12!GO:0016265;death;2.27035775873087e-12!GO:0006413;translational initiation;2.94876492065812e-12!GO:0003743;translation initiation factor activity;3.32846891137902e-12!GO:0006399;tRNA metabolic process;4.34882284086426e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.60383461834026e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;5.29130968495942e-12!GO:0000074;regulation of progression through cell cycle;6.08524964114795e-12!GO:0051726;regulation of cell cycle;6.98608382831853e-12!GO:0006364;rRNA processing;1.07199660141682e-11!GO:0016072;rRNA metabolic process;1.52378351869952e-11!GO:0005789;endoplasmic reticulum membrane;1.67749224256151e-11!GO:0006323;DNA packaging;1.95621827143463e-11!GO:0016604;nuclear body;2.50123641593854e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.2534853954259e-11!GO:0016887;ATPase activity;3.81155657827598e-11!GO:0042623;ATPase activity, coupled;4.19799990455357e-11!GO:0009055;electron carrier activity;5.00354563732366e-11!GO:0006446;regulation of translational initiation;5.50508781697065e-11!GO:0016192;vesicle-mediated transport;9.19493715403972e-11!GO:0000785;chromatin;1.00707687452911e-10!GO:0006913;nucleocytoplasmic transport;1.25071669311602e-10!GO:0051169;nuclear transport;2.68701573954021e-10!GO:0008565;protein transporter activity;3.3932870951684e-10!GO:0005643;nuclear pore;3.64721245234044e-10!GO:0008639;small protein conjugating enzyme activity;3.64796490704763e-10!GO:0009259;ribonucleotide metabolic process;4.00288453997571e-10!GO:0019787;small conjugating protein ligase activity;4.16691443119348e-10!GO:0065004;protein-DNA complex assembly;4.20498329615055e-10!GO:0009056;catabolic process;6.93091475584632e-10!GO:0004842;ubiquitin-protein ligase activity;8.82159655726795e-10!GO:0006333;chromatin assembly or disassembly;1.46626878212427e-09!GO:0006163;purine nucleotide metabolic process;1.55088151906741e-09!GO:0004386;helicase activity;1.70473384212761e-09!GO:0016881;acid-amino acid ligase activity;1.73466704553813e-09!GO:0005793;ER-Golgi intermediate compartment;1.79423933481566e-09!GO:0007005;mitochondrion organization and biogenesis;2.30756346917201e-09!GO:0051188;cofactor biosynthetic process;2.86172482097311e-09!GO:0003712;transcription cofactor activity;3.18972281308964e-09!GO:0065002;intracellular protein transport across a membrane;3.63069366490327e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.29160209238644e-09!GO:0009150;purine ribonucleotide metabolic process;4.39977737251856e-09!GO:0016607;nuclear speck;6.53752682256116e-09!GO:0009260;ribonucleotide biosynthetic process;6.61451255014545e-09!GO:0030532;small nuclear ribonucleoprotein complex;7.4834042211299e-09!GO:0051246;regulation of protein metabolic process;9.0444519579916e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.46696701152608e-09!GO:0004812;aminoacyl-tRNA ligase activity;9.46696701152608e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.46696701152608e-09!GO:0042981;regulation of apoptosis;1.10850283212764e-08!GO:0006164;purine nucleotide biosynthetic process;1.10850283212764e-08!GO:0043067;regulation of programmed cell death;1.13105597162232e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.13829889243855e-08!GO:0009141;nucleoside triphosphate metabolic process;1.50506206593573e-08!GO:0006334;nucleosome assembly;1.53526736348709e-08!GO:0043038;amino acid activation;1.59995042718832e-08!GO:0006418;tRNA aminoacylation for protein translation;1.59995042718832e-08!GO:0043039;tRNA aminoacylation;1.59995042718832e-08!GO:0016740;transferase activity;1.61879681589203e-08!GO:0017038;protein import;1.64106331870732e-08!GO:0008026;ATP-dependent helicase activity;1.70854803168015e-08!GO:0050657;nucleic acid transport;1.74449163919628e-08!GO:0051236;establishment of RNA localization;1.74449163919628e-08!GO:0050658;RNA transport;1.74449163919628e-08!GO:0016779;nucleotidyltransferase activity;2.17268413951011e-08!GO:0006403;RNA localization;2.21731928352329e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.39510311987366e-08!GO:0046930;pore complex;2.47852587202332e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.08084331431506e-08!GO:0006366;transcription from RNA polymerase II promoter;3.61634701818411e-08!GO:0048475;coated membrane;3.89665829920143e-08!GO:0030117;membrane coat;3.89665829920143e-08!GO:0005768;endosome;5.07466414862043e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.41927842313449e-08!GO:0009144;purine nucleoside triphosphate metabolic process;5.41927842313449e-08!GO:0003924;GTPase activity;6.14350701645449e-08!GO:0031497;chromatin assembly;6.24857654069796e-08!GO:0009142;nucleoside triphosphate biosynthetic process;6.5942286184548e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.5942286184548e-08!GO:0015986;ATP synthesis coupled proton transport;6.5942286184548e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.5942286184548e-08!GO:0030120;vesicle coat;7.31065230984756e-08!GO:0030662;coated vesicle membrane;7.31065230984756e-08!GO:0015630;microtubule cytoskeleton;8.63425906255924e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.09666520616639e-07!GO:0009060;aerobic respiration;1.1346626266679e-07!GO:0048523;negative regulation of cellular process;1.137007472117e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.52109455509402e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.52109455509402e-07!GO:0043623;cellular protein complex assembly;1.69898377868967e-07!GO:0003697;single-stranded DNA binding;1.72322617104642e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.83674119556459e-07!GO:0009108;coenzyme biosynthetic process;2.0393538565645e-07!GO:0032446;protein modification by small protein conjugation;2.46790296413388e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.55015500926808e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.76014770243856e-07!GO:0016567;protein ubiquitination;3.5119465327612e-07!GO:0043566;structure-specific DNA binding;3.57539584565357e-07!GO:0046034;ATP metabolic process;3.92220736785186e-07!GO:0044431;Golgi apparatus part;4.73737674585885e-07!GO:0019829;cation-transporting ATPase activity;5.64638729670186e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.85979937844644e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.51757486039658e-07!GO:0005839;proteasome core complex (sensu Eukaryota);7.73101037175011e-07!GO:0045333;cellular respiration;7.83989192163023e-07!GO:0051028;mRNA transport;8.54528086118304e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.73188066956754e-07!GO:0006752;group transfer coenzyme metabolic process;8.93614678423192e-07!GO:0042802;identical protein binding;9.2896246117422e-07!GO:0006754;ATP biosynthetic process;9.38297292829659e-07!GO:0006753;nucleoside phosphate metabolic process;9.38297292829659e-07!GO:0006099;tricarboxylic acid cycle;1.06046263018947e-06!GO:0046356;acetyl-CoA catabolic process;1.06046263018947e-06!GO:0009117;nucleotide metabolic process;1.06684391448213e-06!GO:0016787;hydrolase activity;1.12013737920654e-06!GO:0006793;phosphorus metabolic process;1.45822774305982e-06!GO:0006796;phosphate metabolic process;1.45822774305982e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.46576193195315e-06!GO:0048519;negative regulation of biological process;1.54684082110508e-06!GO:0005819;spindle;1.66243906166086e-06!GO:0045259;proton-transporting ATP synthase complex;1.832645575686e-06!GO:0000245;spliceosome assembly;1.92221545911267e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.05979513255295e-06!GO:0006261;DNA-dependent DNA replication;2.23960619567379e-06!GO:0006084;acetyl-CoA metabolic process;2.49720464842182e-06!GO:0008654;phospholipid biosynthetic process;2.55986405607726e-06!GO:0043069;negative regulation of programmed cell death;2.61276974081102e-06!GO:0050794;regulation of cellular process;2.67394749750663e-06!GO:0016491;oxidoreductase activity;2.70942608506254e-06!GO:0005525;GTP binding;2.80625697606159e-06!GO:0006916;anti-apoptosis;3.38135266511678e-06!GO:0005762;mitochondrial large ribosomal subunit;3.38135266511678e-06!GO:0000315;organellar large ribosomal subunit;3.38135266511678e-06!GO:0045454;cell redox homeostasis;3.38917553972937e-06!GO:0004298;threonine endopeptidase activity;3.93874424489771e-06!GO:0009109;coenzyme catabolic process;4.38160762135108e-06!GO:0043066;negative regulation of apoptosis;5.20130143250857e-06!GO:0016568;chromatin modification;6.62781577473813e-06!GO:0051187;cofactor catabolic process;6.76432197236166e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.46075075364777e-06!GO:0005667;transcription factor complex;8.18730582775422e-06!GO:0016853;isomerase activity;9.12780076625216e-06!GO:0003899;DNA-directed RNA polymerase activity;9.99167232254163e-06!GO:0005813;centrosome;1.06097154920794e-05!GO:0044440;endosomal part;1.21741011372454e-05!GO:0010008;endosome membrane;1.21741011372454e-05!GO:0051170;nuclear import;1.3742951321605e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.40218902160971e-05!GO:0006613;cotranslational protein targeting to membrane;1.43335635494015e-05!GO:0031988;membrane-bound vesicle;1.61189583250097e-05!GO:0003724;RNA helicase activity;1.64138957786017e-05!GO:0000139;Golgi membrane;1.70282531747252e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.71019183566053e-05!GO:0005798;Golgi-associated vesicle;1.74065005590855e-05!GO:0000775;chromosome, pericentric region;1.77498072228866e-05!GO:0031252;leading edge;1.93346998920269e-05!GO:0031968;organelle outer membrane;2.32886789252464e-05!GO:0000314;organellar small ribosomal subunit;2.96956048258695e-05!GO:0005763;mitochondrial small ribosomal subunit;2.96956048258695e-05!GO:0051329;interphase of mitotic cell cycle;3.00857345229626e-05!GO:0006606;protein import into nucleus;3.03646019925654e-05!GO:0005815;microtubule organizing center;3.17196517828817e-05!GO:0016310;phosphorylation;3.28015828314078e-05!GO:0007051;spindle organization and biogenesis;3.33041728599296e-05!GO:0019867;outer membrane;3.47297362889032e-05!GO:0031324;negative regulation of cellular metabolic process;3.83352582514939e-05!GO:0000075;cell cycle checkpoint;4.22051103790451e-05!GO:0005770;late endosome;4.60738742066657e-05!GO:0007088;regulation of mitosis;4.7706240597913e-05!GO:0048471;perinuclear region of cytoplasm;5.04817867116731e-05!GO:0043021;ribonucleoprotein binding;5.22149676519842e-05!GO:0051427;hormone receptor binding;5.25608805486208e-05!GO:0008094;DNA-dependent ATPase activity;5.72046622929392e-05!GO:0016126;sterol biosynthetic process;5.81206265407308e-05!GO:0006839;mitochondrial transport;5.9944050211293e-05!GO:0051252;regulation of RNA metabolic process;6.03872937542304e-05!GO:0032561;guanyl ribonucleotide binding;6.36534594282911e-05!GO:0019001;guanyl nucleotide binding;6.36534594282911e-05!GO:0008033;tRNA processing;6.75890264917639e-05!GO:0005769;early endosome;7.01221467089156e-05!GO:0016563;transcription activator activity;7.61345146509013e-05!GO:0000786;nucleosome;8.05785380130475e-05!GO:0051325;interphase;8.82738188418296e-05!GO:0003713;transcription coactivator activity;8.87864350976235e-05!GO:0005788;endoplasmic reticulum lumen;9.43544442206613e-05!GO:0031982;vesicle;9.46084025343465e-05!GO:0051168;nuclear export;9.87275102028916e-05!GO:0048522;positive regulation of cellular process;0.000107904899063326!GO:0035257;nuclear hormone receptor binding;0.000109264497429409!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000109980309820118!GO:0000151;ubiquitin ligase complex;0.00011124789906419!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000112931109316207!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000121124377334132!GO:0044452;nucleolar part;0.000122022418826627!GO:0045786;negative regulation of progression through cell cycle;0.000122630762606492!GO:0005657;replication fork;0.000130016077251334!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000130218963366589!GO:0031410;cytoplasmic vesicle;0.000131826914554002!GO:0005741;mitochondrial outer membrane;0.000136061333295933!GO:0016859;cis-trans isomerase activity;0.000138148532499953!GO:0006626;protein targeting to mitochondrion;0.000144151787465025!GO:0065009;regulation of a molecular function;0.000164214428291818!GO:0003684;damaged DNA binding;0.000166947990282971!GO:0009892;negative regulation of metabolic process;0.000181133860707836!GO:0007006;mitochondrial membrane organization and biogenesis;0.000195839582567133!GO:0030118;clathrin coat;0.000211239924322887!GO:0043681;protein import into mitochondrion;0.000228752688128924!GO:0009967;positive regulation of signal transduction;0.000239664287537559!GO:0003714;transcription corepressor activity;0.000244941517919902!GO:0005885;Arp2/3 protein complex;0.000327397443990913!GO:0008610;lipid biosynthetic process;0.000327397443990913!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000330941444061061!GO:0008632;apoptotic program;0.000350907479116222!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000379230053910124!GO:0046474;glycerophospholipid biosynthetic process;0.000390137462023954!GO:0007243;protein kinase cascade;0.00039901858151005!GO:0008186;RNA-dependent ATPase activity;0.000410259877637359!GO:0033116;ER-Golgi intermediate compartment membrane;0.000420312495433229!GO:0043488;regulation of mRNA stability;0.000427799000577707!GO:0043487;regulation of RNA stability;0.000427799000577707!GO:0003690;double-stranded DNA binding;0.000429250633067727!GO:0006612;protein targeting to membrane;0.000434182858199321!GO:0046467;membrane lipid biosynthetic process;0.00048711057974741!GO:0004576;oligosaccharyl transferase activity;0.000540217741216187!GO:0007010;cytoskeleton organization and biogenesis;0.000556256386766763!GO:0030119;AP-type membrane coat adaptor complex;0.000566927118698365!GO:0016564;transcription repressor activity;0.000575624495273293!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000591178078788167!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000594509920927015!GO:0019899;enzyme binding;0.000603854810317034!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000637040914899914!GO:0008250;oligosaccharyl transferase complex;0.000670108087231038!GO:0006401;RNA catabolic process;0.000680210510843569!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000705611799096507!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000757832677406423!GO:0015631;tubulin binding;0.000758737888305129!GO:0003729;mRNA binding;0.000761299155711018!GO:0005048;signal sequence binding;0.00079309663032116!GO:0005905;coated pit;0.000805315815650724!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000912610134946862!GO:0019843;rRNA binding;0.000969406699519769!GO:0030658;transport vesicle membrane;0.00100420707459621!GO:0006402;mRNA catabolic process;0.00101167587505309!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00101383906779467!GO:0016363;nuclear matrix;0.00101428856650664!GO:0001726;ruffle;0.00102353108438646!GO:0000776;kinetochore;0.00103334059511556!GO:0051920;peroxiredoxin activity;0.00103353367866866!GO:0051052;regulation of DNA metabolic process;0.0010733074229844!GO:0004004;ATP-dependent RNA helicase activity;0.0010733074229844!GO:0006383;transcription from RNA polymerase III promoter;0.00107446024411583!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00112012111954775!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00112012111954775!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00112012111954775!GO:0005773;vacuole;0.00112461139949117!GO:0030867;rough endoplasmic reticulum membrane;0.00112550823149146!GO:0050662;coenzyme binding;0.00115855228769979!GO:0030131;clathrin adaptor complex;0.00115855228769979!GO:0006695;cholesterol biosynthetic process;0.00116763644345105!GO:0031072;heat shock protein binding;0.00116763644345105!GO:0030132;clathrin coat of coated pit;0.00126694720013186!GO:0000059;protein import into nucleus, docking;0.00126694720013186!GO:0016481;negative regulation of transcription;0.00126883413611881!GO:0003682;chromatin binding;0.00133353587238726!GO:0006302;double-strand break repair;0.00135861810117605!GO:0050789;regulation of biological process;0.00138005488546776!GO:0006091;generation of precursor metabolites and energy;0.00145434753683323!GO:0005874;microtubule;0.00149412291104796!GO:0005684;U2-dependent spliceosome;0.00155385518334888!GO:0004518;nuclease activity;0.00155718626061628!GO:0051789;response to protein stimulus;0.00156488023385767!GO:0006986;response to unfolded protein;0.00156488023385767!GO:0046489;phosphoinositide biosynthetic process;0.00159180635317624!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00167267914977508!GO:0000049;tRNA binding;0.00171917724737096!GO:0006414;translational elongation;0.00178517866473397!GO:0005791;rough endoplasmic reticulum;0.00184109144406342!GO:0004527;exonuclease activity;0.00187344322660095!GO:0009165;nucleotide biosynthetic process;0.00197929996022206!GO:0006289;nucleotide-excision repair;0.00200024389495628!GO:0006891;intra-Golgi vesicle-mediated transport;0.0020220851039679!GO:0016197;endosome transport;0.00207583330994202!GO:0048500;signal recognition particle;0.00229296654705251!GO:0016741;transferase activity, transferring one-carbon groups;0.0025287305590741!GO:0018196;peptidyl-asparagine modification;0.00254727617158837!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00254727617158837!GO:0030660;Golgi-associated vesicle membrane;0.00257933086661987!GO:0051087;chaperone binding;0.00259356972928158!GO:0008168;methyltransferase activity;0.00261528052009855!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00276278999769642!GO:0030880;RNA polymerase complex;0.0027712870972169!GO:0004674;protein serine/threonine kinase activity;0.00303180442794213!GO:0051098;regulation of binding;0.00308100502704948!GO:0005637;nuclear inner membrane;0.00311567328993454!GO:0008637;apoptotic mitochondrial changes;0.00312685540090132!GO:0048468;cell development;0.00324530931238927!GO:0006650;glycerophospholipid metabolic process;0.00332905875506507!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00332919629512266!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00335764688365944!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00335764688365944!GO:0008312;7S RNA binding;0.00335764688365944!GO:0015980;energy derivation by oxidation of organic compounds;0.00336380624615174!GO:0007264;small GTPase mediated signal transduction;0.00337408671956129!GO:0007052;mitotic spindle organization and biogenesis;0.00351440612068474!GO:0003678;DNA helicase activity;0.00351906558297217!GO:0000323;lytic vacuole;0.00373635021017548!GO:0005764;lysosome;0.00373635021017548!GO:0048518;positive regulation of biological process;0.00386913694325596!GO:0030663;COPI coated vesicle membrane;0.00388687745180908!GO:0030126;COPI vesicle coat;0.00388687745180908!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00395666073096945!GO:0005856;cytoskeleton;0.00396418416078325!GO:0030659;cytoplasmic vesicle membrane;0.00402757408441591!GO:0030133;transport vesicle;0.00403184752305405!GO:0050790;regulation of catalytic activity;0.00409548643304818!GO:0032508;DNA duplex unwinding;0.00409548643304818!GO:0032392;DNA geometric change;0.00409548643304818!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00413850664150602!GO:0007093;mitotic cell cycle checkpoint;0.00418766876889667!GO:0030125;clathrin vesicle coat;0.00421592232479965!GO:0030665;clathrin coated vesicle membrane;0.00421592232479965!GO:0043065;positive regulation of apoptosis;0.00433617550800865!GO:0007017;microtubule-based process;0.00443110748287103!GO:0030031;cell projection biogenesis;0.00443177828274092!GO:0009116;nucleoside metabolic process;0.00455111883490838!GO:0008092;cytoskeletal protein binding;0.0046583180169148!GO:0035258;steroid hormone receptor binding;0.00471102953355708!GO:0008180;signalosome;0.00482310383821104!GO:0006611;protein export from nucleus;0.00485991529909882!GO:0043068;positive regulation of programmed cell death;0.00519567666908276!GO:0003711;transcription elongation regulator activity;0.00540009197286124!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00545528810163025!GO:0045047;protein targeting to ER;0.00545528810163025!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00561911216285609!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00571466557187293!GO:0000428;DNA-directed RNA polymerase complex;0.00571466557187293!GO:0043624;cellular protein complex disassembly;0.00571466557187293!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00576048968508639!GO:0017166;vinculin binding;0.00576403867871471!GO:0006979;response to oxidative stress;0.00596199870665686!GO:0048037;cofactor binding;0.00614614589409692!GO:0006352;transcription initiation;0.00620275001936226!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00621415929416971!GO:0016044;membrane organization and biogenesis;0.00627518485254472!GO:0006950;response to stress;0.00629949054174488!GO:0030036;actin cytoskeleton organization and biogenesis;0.00631069083293005!GO:0006643;membrane lipid metabolic process;0.00648054766395319!GO:0006595;polyamine metabolic process;0.00650180704559177!GO:0046483;heterocycle metabolic process;0.00650180704559177!GO:0006284;base-excision repair;0.00655442606985614!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00655442606985614!GO:0006268;DNA unwinding during replication;0.00655442606985614!GO:0000082;G1/S transition of mitotic cell cycle;0.00655442606985614!GO:0008139;nuclear localization sequence binding;0.00655442606985614!GO:0043022;ribosome binding;0.00666052812074921!GO:0006417;regulation of translation;0.00668452279986067!GO:0030176;integral to endoplasmic reticulum membrane;0.00706363324288318!GO:0051287;NAD binding;0.00706501802767941!GO:0006405;RNA export from nucleus;0.00711295052127604!GO:0030134;ER to Golgi transport vesicle;0.00715768897776256!GO:0044433;cytoplasmic vesicle part;0.00738419989344015!GO:0016251;general RNA polymerase II transcription factor activity;0.00740562877028523!GO:0008601;protein phosphatase type 2A regulator activity;0.00744283743919919!GO:0008022;protein C-terminus binding;0.00744655091568119!GO:0009112;nucleobase metabolic process;0.00746251783816554!GO:0030384;phosphoinositide metabolic process;0.00750523504925595!GO:0016272;prefoldin complex;0.00754311977183821!GO:0000159;protein phosphatase type 2A complex;0.00765861816191398!GO:0051540;metal cluster binding;0.00775523460696812!GO:0051536;iron-sulfur cluster binding;0.00775523460696812!GO:0030057;desmosome;0.00792939498739615!GO:0008361;regulation of cell size;0.0079623995937472!GO:0032984;macromolecular complex disassembly;0.00804047310606443!GO:0019222;regulation of metabolic process;0.00804911454086642!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00805286884366629!GO:0015399;primary active transmembrane transporter activity;0.00805286884366629!GO:0008287;protein serine/threonine phosphatase complex;0.00839796570438444!GO:0030137;COPI-coated vesicle;0.00881812906676967!GO:0046983;protein dimerization activity;0.00881812906676967!GO:0006275;regulation of DNA replication;0.00881812906676967!GO:0006310;DNA recombination;0.00891692237202019!GO:0043154;negative regulation of caspase activity;0.00892974494198965!GO:0005149;interleukin-1 receptor binding;0.00920306867441343!GO:0008408;3'-5' exonuclease activity;0.00924421475522649!GO:0005758;mitochondrial intermembrane space;0.00934533688404321!GO:0006730;one-carbon compound metabolic process;0.00940229709315834!GO:0003746;translation elongation factor activity;0.0100636848375369!GO:0030027;lamellipodium;0.010077049778444!GO:0005832;chaperonin-containing T-complex;0.0102099970879916!GO:0006007;glucose catabolic process;0.0103947763363162!GO:0000178;exosome (RNase complex);0.0106843777311961!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0107244061536423!GO:0004722;protein serine/threonine phosphatase activity;0.0108807846135877!GO:0030127;COPII vesicle coat;0.0109230000747949!GO:0012507;ER to Golgi transport vesicle membrane;0.0109230000747949!GO:0006644;phospholipid metabolic process;0.0109230000747949!GO:0007034;vacuolar transport;0.0109630527332477!GO:0031529;ruffle organization and biogenesis;0.011154875316574!GO:0048487;beta-tubulin binding;0.0111629766412725!GO:0006354;RNA elongation;0.0113487942291852!GO:0016049;cell growth;0.0113487942291852!GO:0030521;androgen receptor signaling pathway;0.0114699381131486!GO:0000096;sulfur amino acid metabolic process;0.01154373782419!GO:0006520;amino acid metabolic process;0.0116674479751642!GO:0030503;regulation of cell redox homeostasis;0.011740876967227!GO:0007050;cell cycle arrest;0.0118603424162358!GO:0031124;mRNA 3'-end processing;0.0119099843957329!GO:0043241;protein complex disassembly;0.0119367441186384!GO:0006144;purine base metabolic process;0.0119420225174328!GO:0016311;dephosphorylation;0.0119420225174328!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0120668270404431!GO:0005876;spindle microtubule;0.0120669321779425!GO:0012506;vesicle membrane;0.0120764298026397!GO:0001836;release of cytochrome c from mitochondria;0.0122726918024632!GO:0045941;positive regulation of transcription;0.0133983726710796!GO:0000792;heterochromatin;0.0134799579807998!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0136321262650045!GO:0003756;protein disulfide isomerase activity;0.0136338759127694!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0136338759127694!GO:0007059;chromosome segregation;0.0141052705366738!GO:0004532;exoribonuclease activity;0.0141699639002658!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0141699639002658!GO:0043414;biopolymer methylation;0.0141913527582061!GO:0045893;positive regulation of transcription, DNA-dependent;0.0144729624117627!GO:0051101;regulation of DNA binding;0.0144995309089866!GO:0006506;GPI anchor biosynthetic process;0.0147715107248887!GO:0005869;dynactin complex;0.0147715107248887!GO:0045045;secretory pathway;0.0148054092748833!GO:0006497;protein amino acid lipidation;0.0148392660711633!GO:0032259;methylation;0.014900729718954!GO:0031970;organelle envelope lumen;0.014900729718954!GO:0019752;carboxylic acid metabolic process;0.0150094107304797!GO:0006818;hydrogen transport;0.0155241515642395!GO:0030029;actin filament-based process;0.015700712479997!GO:0000922;spindle pole;0.0158468438164356!GO:0051881;regulation of mitochondrial membrane potential;0.0159654395076229!GO:0015992;proton transport;0.0161017316566955!GO:0048144;fibroblast proliferation;0.0161017316566955!GO:0048145;regulation of fibroblast proliferation;0.0161017316566955!GO:0006082;organic acid metabolic process;0.0161935030041101!GO:0008299;isoprenoid biosynthetic process;0.0163006722052726!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0165840386936206!GO:0022411;cellular component disassembly;0.0169810403771815!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0174914021073816!GO:0015002;heme-copper terminal oxidase activity;0.0174914021073816!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0174914021073816!GO:0004129;cytochrome-c oxidase activity;0.0174914021073816!GO:0016584;nucleosome positioning;0.0175662521611846!GO:0030433;ER-associated protein catabolic process;0.0175666369227019!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0175666369227019!GO:0048146;positive regulation of fibroblast proliferation;0.01782489201626!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0180474178415707!GO:0009303;rRNA transcription;0.0180608832047491!GO:0030032;lamellipodium biogenesis;0.0180608832047491!GO:0006368;RNA elongation from RNA polymerase II promoter;0.018180644823129!GO:0006505;GPI anchor metabolic process;0.0185168050310575!GO:0006270;DNA replication initiation;0.0197734612911267!GO:0051338;regulation of transferase activity;0.0203336923356034!GO:0008017;microtubule binding;0.0204864603124939!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0210066792244921!GO:0030833;regulation of actin filament polymerization;0.0210867572197426!GO:0042393;histone binding;0.0210867572197426!GO:0009119;ribonucleoside metabolic process;0.0213482419673581!GO:0042770;DNA damage response, signal transduction;0.0214441115754496!GO:0030145;manganese ion binding;0.0215672217641055!GO:0006509;membrane protein ectodomain proteolysis;0.0216421906841168!GO:0033619;membrane protein proteolysis;0.0216421906841168!GO:0008538;proteasome activator activity;0.0230089967089831!GO:0006778;porphyrin metabolic process;0.0231586855177668!GO:0033013;tetrapyrrole metabolic process;0.0231586855177668!GO:0008234;cysteine-type peptidase activity;0.0232006817423854!GO:0006740;NADPH regeneration;0.0236423133840109!GO:0006098;pentose-phosphate shunt;0.0236423133840109!GO:0016125;sterol metabolic process;0.0243152430253564!GO:0046982;protein heterodimerization activity;0.024443582780933!GO:0006779;porphyrin biosynthetic process;0.02504067963195!GO:0033014;tetrapyrrole biosynthetic process;0.02504067963195!GO:0000339;RNA cap binding;0.0251029632722668!GO:0031326;regulation of cellular biosynthetic process;0.0251333788223363!GO:0046822;regulation of nucleocytoplasmic transport;0.0259405958888501!GO:0004003;ATP-dependent DNA helicase activity;0.026229412664019!GO:0046426;negative regulation of JAK-STAT cascade;0.026229412664019!GO:0046519;sphingoid metabolic process;0.0274083792916563!GO:0000287;magnesium ion binding;0.0274083792916563!GO:0008213;protein amino acid alkylation;0.0274500343371073!GO:0006479;protein amino acid methylation;0.0274500343371073!GO:0043189;H4/H2A histone acetyltransferase complex;0.0275619640211961!GO:0006376;mRNA splice site selection;0.0279500880169836!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0279500880169836!GO:0009451;RNA modification;0.0279500880169836!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0279500880169836!GO:0050681;androgen receptor binding;0.0279863085470468!GO:0045334;clathrin-coated endocytic vesicle;0.0292913475942147!GO:0016791;phosphoric monoester hydrolase activity;0.0292979644476599!GO:0031902;late endosome membrane;0.0293387363580116!GO:0001558;regulation of cell growth;0.0296262817544822!GO:0008652;amino acid biosynthetic process;0.0296262817544822!GO:0031371;ubiquitin conjugating enzyme complex;0.0296668177671821!GO:0043284;biopolymer biosynthetic process;0.0297851816328284!GO:0022890;inorganic cation transmembrane transporter activity;0.0298056554924666!GO:0009889;regulation of biosynthetic process;0.0298476714051617!GO:0000910;cytokinesis;0.0301608803694707!GO:0006917;induction of apoptosis;0.0305454555861998!GO:0031901;early endosome membrane;0.0305454555861998!GO:0042158;lipoprotein biosynthetic process;0.031126644269691!GO:0016407;acetyltransferase activity;0.0315817095931709!GO:0051128;regulation of cellular component organization and biogenesis;0.031848096245401!GO:0006892;post-Golgi vesicle-mediated transport;0.0318946983776734!GO:0016408;C-acyltransferase activity;0.0320702340864163!GO:0000209;protein polyubiquitination;0.0320702340864163!GO:0006672;ceramide metabolic process;0.0320702340864163!GO:0046966;thyroid hormone receptor binding;0.0320779275199576!GO:0005669;transcription factor TFIID complex;0.0320779275199576!GO:0008426;protein kinase C inhibitor activity;0.0327450636653242!GO:0008243;plasminogen activator activity;0.0327908644773923!GO:0000086;G2/M transition of mitotic cell cycle;0.0331350835475947!GO:0007021;tubulin folding;0.0339000303162676!GO:0006458;'de novo' protein folding;0.0346339379493841!GO:0051084;'de novo' posttranslational protein folding;0.0346339379493841!GO:0007041;lysosomal transport;0.0349778942735742!GO:0032200;telomere organization and biogenesis;0.0350459812925031!GO:0000723;telomere maintenance;0.0350459812925031!GO:0031570;DNA integrity checkpoint;0.0355915531319778!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0356097182866586!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0363208250905478!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0364967496665494!GO:0006378;mRNA polyadenylation;0.0367650872211202!GO:0007346;regulation of progression through mitotic cell cycle;0.0374111391973261!GO:0051537;2 iron, 2 sulfur cluster binding;0.0377097961754513!GO:0009166;nucleotide catabolic process;0.0380137387819836!GO:0043549;regulation of kinase activity;0.0382726675146131!GO:0006984;ER-nuclear signaling pathway;0.0386060841519068!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0386060841519068!GO:0045039;protein import into mitochondrial inner membrane;0.0386060841519068!GO:0006338;chromatin remodeling;0.0390595317802476!GO:0012502;induction of programmed cell death;0.0390595317802476!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0391092759599126!GO:0035267;NuA4 histone acetyltransferase complex;0.0392670226086805!GO:0050750;low-density lipoprotein receptor binding;0.0392670226086805!GO:0050178;phenylpyruvate tautomerase activity;0.0396447682168942!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.039834489291008!GO:0043596;nuclear replication fork;0.0404806077968156!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0406985191105879!GO:0010257;NADH dehydrogenase complex assembly;0.0406985191105879!GO:0033108;mitochondrial respiratory chain complex assembly;0.0406985191105879!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0412465334282978!GO:0051539;4 iron, 4 sulfur cluster binding;0.0419069339430082!GO:0043281;regulation of caspase activity;0.0420253538359158!GO:0000725;recombinational repair;0.0421619752367661!GO:0000724;double-strand break repair via homologous recombination;0.0421619752367661!GO:0030911;TPR domain binding;0.0428989601560635!GO:0030508;thiol-disulfide exchange intermediate activity;0.0428989601560635!GO:0006749;glutathione metabolic process;0.0429230042776636!GO:0000175;3'-5'-exoribonuclease activity;0.0432897069026887!GO:0031123;RNA 3'-end processing;0.0432897069026887!GO:0005784;translocon complex;0.0439315317955929!GO:0043492;ATPase activity, coupled to movement of substances;0.0440571840719351!GO:0005663;DNA replication factor C complex;0.0441270990290235!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0442016708137029!GO:0033673;negative regulation of kinase activity;0.0447077638279359!GO:0006469;negative regulation of protein kinase activity;0.0447077638279359!GO:0006541;glutamine metabolic process;0.0447167493119371!GO:0004680;casein kinase activity;0.0450262489568384!GO:0005665;DNA-directed RNA polymerase II, core complex;0.045380498302068!GO:0046128;purine ribonucleoside metabolic process;0.0459590936643029!GO:0042278;purine nucleoside metabolic process;0.0459590936643029!GO:0035035;histone acetyltransferase binding;0.0460025454641664!GO:0009124;nucleoside monophosphate biosynthetic process;0.0460025454641664!GO:0009123;nucleoside monophosphate metabolic process;0.0460025454641664!GO:0007004;telomere maintenance via telomerase;0.0461807840881294!GO:0000781;chromosome, telomeric region;0.0468159539225394!GO:0005092;GDP-dissociation inhibitor activity;0.0468159539225394!GO:0051348;negative regulation of transferase activity;0.0468168301697243!GO:0006733;oxidoreduction coenzyme metabolic process;0.0468333697222532!GO:0004448;isocitrate dehydrogenase activity;0.047348087639941!GO:0019206;nucleoside kinase activity;0.047348087639941!GO:0030496;midbody;0.0475836970221771!GO:0022406;membrane docking;0.0481369144160341!GO:0048278;vesicle docking;0.0481369144160341!GO:0008097;5S rRNA binding;0.0488917814455329!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0488917814455329!GO:0008536;Ran GTPase binding;0.0490683094198877!GO:0000118;histone deacetylase complex;0.0490683094198877!GO:0045806;negative regulation of endocytosis;0.0494583019846953!GO:0006220;pyrimidine nucleotide metabolic process;0.0497279975439505 | |||
|sample_id=11421 | |||
|sample_note= | |||
|sample_sex=female | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=skin | |||
|top_motifs=TP53:2.0144359463;TBX4,5:1.73929790175;TEF:1.71726481429;ZEB1:1.48135433829;PDX1:1.45941574383;POU1F1:1.41108301706;FOXM1:1.34739519423;SNAI1..3:1.34659129967;PPARG:1.18222989996;NKX3-2:1.16310341797;FOXQ1:1.14522565028;ONECUT1,2:1.13430249004;VSX1,2:0.904538446004;PAX1,9:0.869567069913;NKX2-3_NKX2-5:0.857648202922;ARID5B:0.853394302896;NKX2-1,4:0.851801143735;CDC5L:0.692628885972;NR5A1,2:0.674463398042;TEAD1:0.672509796268;ZNF148:0.628894559562;HOX{A4,D4}:0.621125170868;ADNP_IRX_SIX_ZHX:0.616505451319;UFEwm:0.600856049289;KLF4:0.600658288091;FOS_FOS{B,L1}_JUN{B,D}:0.573300074888;NFIL3:0.567308165634;NKX2-2,8:0.547234102558;PAX6:0.540301059758;XCPE1{core}:0.516177998413;bHLH_family:0.513643374175;E2F1..5:0.502895674238;MYOD1:0.496556262937;PAX4:0.494779121396;STAT5{A,B}:0.465413044483;T:0.465190999179;TBP:0.440620860629;LHX3,4:0.42313817387;POU6F1:0.398752982232;GFI1B:0.397160465342;ZBTB16:0.380660524492;EVI1:0.376171082982;BACH2:0.296287288895;CEBPA,B_DDIT3:0.282329420213;PAX8:0.276708071042;ZNF423:0.275514122445;LMO2:0.264453917376;POU2F1..3:0.258321667387;SP1:0.251601580168;TOPORS:0.243085077746;RBPJ:0.239670885863;ELK1,4_GABP{A,B1}:0.236976873946;GLI1..3:0.233133333118;GATA4:0.20713196138;IKZF1:0.19713553503;NR6A1:0.16002036745;FOSL2:0.156473228472;NFY{A,B,C}:0.132318634678;GFI1:0.125739567639;PITX1..3:0.125231253586;MYB:0.124122628594;HAND1,2:0.122439036842;OCT4_SOX2{dimer}:0.121382156241;TFAP2{A,C}:0.12071373998;AIRE:0.115479849295;ZNF238:0.111833122704;GCM1,2:0.110265176606;HLF:0.108001441439;NANOG:0.104714768348;ZBTB6:0.0966737626255;TFDP1:0.0846501821987;HMGA1,2:0.0835502733532;NR1H4:0.0790616742116;ZIC1..3:0.0679972009204;RXR{A,B,G}:0.0521823677961;HOX{A5,B5}:0.0339614773381;NRF1:0.0253319070695;ZNF143:0.00981917111548;HSF1,2:-0.00663108159571;POU5F1:-0.00886786065239;AR:-0.00959169100943;SMAD1..7,9:-0.0150990855103;REST:-0.0177925241518;ZNF384:-0.0234506702449;IRF7:-0.0413033793786;TLX1..3_NFIC{dimer}:-0.0426850416142;FOXL1:-0.0528719501091;SOX17:-0.056075257152;LEF1_TCF7_TCF7L1,2:-0.0928373682025;MTF1:-0.10275274904;TFCP2:-0.103018878181;CDX1,2,4:-0.106082244271;NR3C1:-0.131160519124;SPZ1:-0.146364653504;NKX3-1:-0.148391105725;HNF4A_NR2F1,2:-0.158179392482;YY1:-0.183061490656;NKX6-1,2:-0.191595739934;CRX:-0.199116549684;POU3F1..4:-0.205668585159;NFE2:-0.22309705786;ALX4:-0.224038406464;EP300:-0.26657190101;HNF1A:-0.274192584675;FOX{I1,J2}:-0.281895940429;NFKB1_REL_RELA:-0.291458448201;GATA6:-0.298764401158;FOXO1,3,4:-0.305991072246;HOX{A6,A7,B6,B7}:-0.317988200099;ELF1,2,4:-0.320028803583;HES1:-0.340768330006;RXRA_VDR{dimer}:-0.342270069694;SOX{8,9,10}:-0.34405932963;SPI1:-0.367478857146;RFX2..5_RFXANK_RFXAP:-0.374515918215;EN1,2:-0.375553919308;GTF2A1,2:-0.377273215924;FOX{F1,F2,J1}:-0.378575110387;ATF5_CREB3:-0.395836180611;RREB1:-0.401191684256;PAX2:-0.412836117161;PBX1:-0.416426090442;MYBL2:-0.419090330985;SPIB:-0.428781782473;TFAP4:-0.431553603152;IKZF2:-0.4333400091;BREu{core}:-0.435211385991;NFE2L2:-0.447109899761;MAZ:-0.452688282344;CREB1:-0.459546768593;FOXA2:-0.461932601233;GZF1:-0.471680203091;HIC1:-0.478791066513;PAX3,7:-0.48225687379;HIF1A:-0.484422871336;ALX1:-0.505791740514;EBF1:-0.534103948695;ATF2:-0.536997675581;MED-1{core}:-0.542818573474;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.54540243851;ZFP161:-0.548478409032;ETS1,2:-0.551048506989;GTF2I:-0.551533522821;RFX1:-0.554193758695;FOXN1:-0.557626921704;ATF4:-0.602517125649;PRDM1:-0.605080267117;MTE{core}:-0.623007191386;FOXD3:-0.636648106226;IRF1,2:-0.643155596687;STAT2,4,6:-0.643984895948;SOX2:-0.652957887011;MYFfamily:-0.657472799328;NFIX:-0.669804870404;CUX2:-0.685731514511;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.688967659967;RUNX1..3:-0.690780156073;PAX5:-0.693890369042;FOXP1:-0.703612555024;TFAP2B:-0.713169768312;ESR1:-0.724315844624;HOXA9_MEIS1:-0.733062853853;DMAP1_NCOR{1,2}_SMARC:-0.775173499199;SOX5:-0.775323148365;JUN:-0.776032650669;NHLH1,2:-0.781923168579;EGR1..3:-0.786730391352;NFE2L1:-0.822588100881;AHR_ARNT_ARNT2:-0.828877727112;MEF2{A,B,C,D}:-0.836417838901;MAFB:-0.864991671561;NFATC1..3:-0.870145620298;SRF:-0.909512514308;FOXP3:-0.91006483167;PRRX1,2:-0.911437567515;BPTF:-0.919251907377;ESRRA:-0.986609857487;TGIF1:-1.04773544273;HMX1:-1.11823015541;DBP:-1.1274325226;SREBF1,2:-1.18811131617;RORA:-1.19478959689;TLX2:-1.22260702435;STAT1,3:-1.22578470449;HBP1_HMGB_SSRP1_UBTF:-1.25507856461;FOX{D1,D2}:-1.28647862472;MZF1:-1.31201689951;PATZ1:-1.32968688563;TAL1_TCF{3,4,12}:-1.34378222979;ATF6:-1.37391515236;XBP1:-1.38969809244;NANOG{mouse}:-1.52870695142 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11421-118F8;search_select_hide=table117:FF:11421-118F8 | |||
}} | }} | ||
Latest revision as of 18:00, 4 June 2020
| Name: | Keratinocyte - epidermal, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12031 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12031
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12031
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.141 |
| 10 | 10 | 0.49 |
| 100 | 100 | 0.284 |
| 101 | 101 | 0.348 |
| 102 | 102 | 0.154 |
| 103 | 103 | 0.182 |
| 104 | 104 | 0.858 |
| 105 | 105 | 0.437 |
| 106 | 106 | 0.306 |
| 107 | 107 | 0.108 |
| 108 | 108 | 0.393 |
| 109 | 109 | 2.64713e-4 |
| 11 | 11 | 0.115 |
| 110 | 110 | 0.0589 |
| 111 | 111 | 0.11 |
| 112 | 112 | 0.259 |
| 113 | 113 | 0.165 |
| 114 | 114 | 0.173 |
| 115 | 115 | 0.624 |
| 116 | 116 | 0.683 |
| 117 | 117 | 0.0665 |
| 118 | 118 | 0.398 |
| 119 | 119 | 0.268 |
| 12 | 12 | 0.646 |
| 120 | 120 | 0.0122 |
| 121 | 121 | 0.857 |
| 122 | 122 | 0.366 |
| 123 | 123 | 0.611 |
| 124 | 124 | 0.163 |
| 125 | 125 | 0.196 |
| 126 | 126 | 0.248 |
| 127 | 127 | 0.176 |
| 128 | 128 | 0.661 |
| 129 | 129 | 0.117 |
| 13 | 13 | 0.00619 |
| 130 | 130 | 0.985 |
| 131 | 131 | 0.463 |
| 132 | 132 | 0.112 |
| 133 | 133 | 0.0191 |
| 134 | 134 | 0.109 |
| 135 | 135 | 0.437 |
| 136 | 136 | 0.0652 |
| 137 | 137 | 0.448 |
| 138 | 138 | 0.297 |
| 139 | 139 | 0.868 |
| 14 | 14 | 0.883 |
| 140 | 140 | 0.45 |
| 141 | 141 | 0.0091 |
| 142 | 142 | 0.278 |
| 143 | 143 | 0.911 |
| 144 | 144 | 0.207 |
| 145 | 145 | 0.235 |
| 146 | 146 | 0.176 |
| 147 | 147 | 0.302 |
| 148 | 148 | 0.411 |
| 149 | 149 | 0.302 |
| 15 | 15 | 0.847 |
| 150 | 150 | 0.122 |
| 151 | 151 | 0.365 |
| 152 | 152 | 0.0446 |
| 153 | 153 | 0.83 |
| 154 | 154 | 0.777 |
| 155 | 155 | 0.795 |
| 156 | 156 | 0.524 |
| 157 | 157 | 0.606 |
| 158 | 158 | 0.128 |
| 159 | 159 | 0.734 |
| 16 | 16 | 0.0236 |
| 160 | 160 | 0.0805 |
| 161 | 161 | 0.0887 |
| 162 | 162 | 0.337 |
| 163 | 163 | 0.855 |
| 164 | 164 | 0.209 |
| 165 | 165 | 0.581 |
| 166 | 166 | 0.622 |
| 167 | 167 | 0.725 |
| 168 | 168 | 0.369 |
| 169 | 169 | 0.034 |
| 17 | 17 | 0.118 |
| 18 | 18 | 0.186 |
| 19 | 19 | 0.788 |
| 2 | 2 | 0.171 |
| 20 | 20 | 0.596 |
| 21 | 21 | 0.378 |
| 22 | 22 | 0.611 |
| 23 | 23 | 0.719 |
| 24 | 24 | 0.0178 |
| 25 | 25 | 0.909 |
| 26 | 26 | 0.0647 |
| 27 | 27 | 0.594 |
| 28 | 28 | 0.341 |
| 29 | 29 | 0.205 |
| 3 | 3 | 0.204 |
| 30 | 30 | 0.295 |
| 31 | 31 | 0.901 |
| 32 | 32 | 0.271 |
| 33 | 33 | 0.275 |
| 34 | 34 | 0.608 |
| 35 | 35 | 0.466 |
| 36 | 36 | 0.685 |
| 37 | 37 | 0.308 |
| 38 | 38 | 0.178 |
| 39 | 39 | 0.235 |
| 4 | 4 | 0.587 |
| 40 | 40 | 0.00732 |
| 41 | 41 | 0.67 |
| 42 | 42 | 0.349 |
| 43 | 43 | 0.541 |
| 44 | 44 | 0.0105 |
| 45 | 45 | 0.529 |
| 46 | 46 | 0.5 |
| 47 | 47 | 0.112 |
| 48 | 48 | 0.0193 |
| 49 | 49 | 0.85 |
| 5 | 5 | 0.692 |
| 50 | 50 | 0.442 |
| 51 | 51 | 0.647 |
| 52 | 52 | 0.805 |
| 53 | 53 | 0.632 |
| 54 | 54 | 0.853 |
| 55 | 55 | 0.901 |
| 56 | 56 | 0.29 |
| 57 | 57 | 0.198 |
| 58 | 58 | 0.79 |
| 59 | 59 | 0.227 |
| 6 | 6 | 0.446 |
| 60 | 60 | 0.409 |
| 61 | 61 | 0.387 |
| 62 | 62 | 0.97 |
| 63 | 63 | 0.122 |
| 64 | 64 | 0.271 |
| 65 | 65 | 0.372 |
| 66 | 66 | 0.223 |
| 67 | 67 | 0.731 |
| 68 | 68 | 0.531 |
| 69 | 69 | 0.19 |
| 7 | 7 | 0.411 |
| 70 | 70 | 0.149 |
| 71 | 71 | 0.0561 |
| 72 | 72 | 0.956 |
| 73 | 73 | 0.0234 |
| 74 | 74 | 0.168 |
| 75 | 75 | 0.0368 |
| 76 | 76 | 0.964 |
| 77 | 77 | 0.0629 |
| 78 | 78 | 0.0159 |
| 79 | 79 | 0.876 |
| 8 | 8 | 0.128 |
| 80 | 80 | 0.0595 |
| 81 | 81 | 0.517 |
| 82 | 82 | 0.769 |
| 83 | 83 | 0.835 |
| 84 | 84 | 0.302 |
| 85 | 85 | 0.716 |
| 86 | 86 | 0.698 |
| 87 | 87 | 0.05 |
| 88 | 88 | 0.987 |
| 89 | 89 | 0.0268 |
| 9 | 9 | 0.61 |
| 90 | 90 | 0.316 |
| 91 | 91 | 0.967 |
| 92 | 92 | 0.996 |
| 93 | 93 | 0.547 |
| 94 | 94 | 0.434 |
| 95 | 95 | 8.82679e-4 |
| 96 | 96 | 0.761 |
| 97 | 97 | 0.37 |
| 98 | 98 | 0.39 |
| 99 | 99 | 0.00366 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12031
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000325 (stuff accumulating cell)
0000240 (stratified squamous epithelial cell)
0000311 (keratin accumulating cell)
0000079 (stratified epithelial cell)
0000312 (keratinocyte)
0000237 (keratinizing barrier epithelial cell)
0000362 (epidermal cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000082 (human epidermal keratinocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000357 (stratified epithelial stem cell)
CL:0000114 (surface ectodermal cell)
CL:0000221 (ectodermal cell)
