FFCP PHASE1:Mm9::chr11:97914592..97914605,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=217154|HGNC=|MCL_coexpression_id=2749|UniProt=Q8R1B0,A2A549|association_with_transcript=170bp_to_ENSMUST00000017544,NM_146028,uc007lfl.1_5end|description=CAGE_peak_4_at_Stac2_5end|id=chr11:97914592..97914605,-|ontology_enrichment_celltype=CL:0000540!2.38e-07!33;CL:0000047!2.38e-07!33;CL:0000031!2.38e-07!33;CL:0000404!2.38e-07!33;CL:0000117!5.67e-07!23;CL:0000337!5.67e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,7.08e-09,23;CL:0000337,7.08e-09,23;CL:0002092,9.85e-08,3;CL:0002540,9.85e-08,3;CL:0000540,9.96e-08,33;CL:0000047,9.96e-08,33;CL:0000031,9.96e-08,33;CL:0000404,9.96e-08,33;CL:0002610,3.86e-07,3;CL:0002614,8.57e-07,3;CL:0002612,9.40e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!2.63e-15!102;UBERON:0000924!2.63e-15!102;UBERON:0006601!2.63e-15!102;UBERON:0002346!4.19e-11!71;UBERON:0003075!4.19e-11!71;UBERON:0007284!4.19e-11!71;UBERON:0001017!2.33e-10!73;UBERON:0005743!2.33e-10!73;UBERON:0000073!3.51e-10!75;UBERON:0001016!3.51e-10!75;UBERON:0000033!3.77e-09!63;UBERON:0001049!2.12e-07!52;UBERON:0005068!2.12e-07!52;UBERON:0006241!2.12e-07!52;UBERON:0007135!2.12e-07!52|ontology_enrichment_uberon_v019_2=UBERON:0003076,3.02e-16,12;UBERON:0003057,3.02e-16,12;UBERON:0000073,2.35e-13,54;UBERON:0001017,4.77e-13,73;UBERON:0002240,1.54e-12,6;UBERON:0005174,1.54e-12,6;UBERON:0001137,1.54e-12,6;UBERON:0001016,1.57e-12,75;UBERON:0004121,1.07e-11,95;UBERON:0000924,1.07e-11,95;UBERON:0006601,1.07e-11,95;UBERON:0001049,3.26e-11,52;UBERON:0005068,3.26e-11,52;UBERON:0006241,3.26e-11,52;UBERON:0007135,3.26e-11,52;UBERON:0002346,1.77e-10,64;UBERON:0003075,1.77e-10,64;UBERON:0007284,1.77e-10,64;UBERON:0001948,1.92e-10,5;UBERON:0002315,1.92e-10,5;UBERON:0010371,1.18e-09,73;UBERON:0002950,7.14e-09,4;UBERON:0001891,7.14e-09,4;UBERON:0009616,7.14e-09,4;UBERON:0010286,7.14e-09,4;UBERON:0004684,3.86e-07,3;UBERON:0002275,3.86e-07,3;UBERON:0002020,3.98e-07,34;UBERON:0007023,8.56e-07,51;UBERON:0002038,8.57e-07,3;UBERON:0009663,8.57e-07,3;UBERON:0009661,8.57e-07,3;UBERON:0000125,8.57e-07,3;UBERON:0002308,8.57e-07,3;UBERON:0002257,9.40e-07,3|phase1_expression=0.480446541314382,0,0,0,0,0.33575854382378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510259740906419,0,0,0.95995453676044,0.45881856213434,1.14846392823004,0.430761996159075,0.646413698057667,0,0,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0.183546752161682,0,0,0.659058548203415,0.388859798148567,0,0,0,0,0,0,0,0,0,0.528990979272033,0.633831403506179,0.338844532069132,0,4.04954872776629,10.8775299882367,4.2628806896766,0.898800331555214,0.384218305321555,0,0.135005938331691,0.420649922702764,2.57085885963423,2.65042249141936,0.122490799214954,0.191690942036473,0,6.60695285996332,1.78762273319263,2.15049146558741,0.263772575460388,0.274462930807229,0.52091337055676,2.23346399201105,2.8138130501584,1.37518422999129,2.65165726926301,2.56269025438385,1.3047961207771,0,0.377857800533928,0,0,0,0.539703191637817,0,0,0.140444420131752,0.340860645156116,0,0.35333957451034,0.281686839553361,0,0,0,0,0,0,0,1.8125651855302,0.445326417194474,0.520455980298408,0.304465478312141,0.230615497256059,0.60289056221049,0.823120949949934,0,0.494389935468748,0,0,0.161766849947409,0,0,0,1.46390398505774,2.09446706813455,0,0,0,0,5.69204429738326,0,0.251308704225729,1.21677024134594,1.53429274398198,2.70124457927428,0.324482526135515,0.407357455401265,0,0,0.841767423545896,0.130120442962704,0.459804208866946,0.180062129805349,0.30140963567143,0.272145996605311,0.896796041993948,1.78033276663485,4.9153640440413,0,0,0,0,0.278047249225598,0,0.411564272815887,0.995171334092466,0,0,0,0.414251545071004,0,0,0.473489471170421,0.196764231747404,0.308534225774757,0,0,0.116765342367169,0,0,0,0,0,0,1.05144974282064,0,0,0,0,0.464473343720877,0,0.201683524623343,0,0,0,0,0,0,0,0,0,0,0.569003702859245,0.456994050438915,0,2.03651327845314,0,0.49095073923223,0.126473074248515,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,1.50791283939272,2.17562273527484,0.983528546038072,5.24279817978992,5.9403718295483,4.45404409050372,0,0,0.315508219416257,0,0.646270193198397,0.238968797952552,1.11399337041197,1.69845918473299,0,0,0.395287777946524,3.21321316421807,0.425820255624806,0.890328018336276,0.488660878060728,1.15479086080775,0,0,0.302323556964751,0.188605079755898,0,0,0,0,0,0.316036757935816,0,0,0.680879211507576,0,0.129358683782755,0,0,0,0,0,6.33613611772018,1.48282449604674,0,0.16488625294148,0.161464426695906,0.0603129249281559,0.119372344003136,0,0.291480836629851,5.93360966433631,0,0,0,0,0,0,0,0,0,0.954670618015114,0.158167996790568,0,0,0,0,0,0.0826534557253359,0.26175594198403,0,0.621339313086926,1.12738587736838,0.299033092087958,0.165458490457098,0.777804753376191,0.258319646955462,0.337912250981556,0.117357238645754,0.781226309063701,1.04859344425711,0.483168241652012,0,0,0,0,0,0,0.198681354781265,0,0,0,0,0,0,0,0,0,0.665957860122194,1.25599399253266,0.671538465456314,0,5.44279178808428,0.36630324853453,0.214368379079066,0.501572104035363,0,0.460325236507177,0.572895513439397,1.20297227640581,2.05524755931193,0,0,0.45032120322422,0.453142408984205,2.07104124700728,0.207574695168353,0.399024873401031,0,0.243106717068294,0,0.183843508450014,0.222246727801615,0.206035057238894,0.320919209591815,0.252697211763798,0,0,0.0936415074698824,0.320125762024346,0.17230640686684,0,0.231768651889711,0.192909220463705,0,0.147198920134397,0.342869252385415,0.354951612318675,0.238436189947321,0.145346416632329,0.188218760830661,0.169229215783353,0.182927972872773,0,0.271608227691724,0.561142271657738,0.118635018124174,0.0985044823755635,0.409231043169689,0.154936841185966,0.385813221962283,0.249810577937946,0,0.214871054048298,0.57386499620653,0.220591419119515,0.463735671240843|short_description=p4@Stac2}} | ||
|EntrezGene=217154 | |||
|HGNC= | |||
|MCL_coexpression_id=2749 | |||
|UniProt=Q8R1B0,A2A549 | |||
|association_with_transcript=170bp_to_ENSMUST00000017544,NM_146028,uc007lfl.1_5end | |||
|description=CAGE_peak_4_at_Stac2_5end | |||
|id=chr11:97914592..97914605,- | |||
|ontology_enrichment_celltype=CL:0000540!2.38e-07!33;CL:0000047!2.38e-07!33;CL:0000031!2.38e-07!33;CL:0000404!2.38e-07!33;CL:0000117!5.67e-07!23;CL:0000337!5.67e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.08e-09,23;CL:0000337,7.08e-09,23;CL:0002092,9.85e-08,3;CL:0002540,9.85e-08,3;CL:0000540,9.96e-08,33;CL:0000047,9.96e-08,33;CL:0000031,9.96e-08,33;CL:0000404,9.96e-08,33;CL:0002610,3.86e-07,3;CL:0002614,8.57e-07,3;CL:0002612,9.40e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.63e-15!102;UBERON:0000924!2.63e-15!102;UBERON:0006601!2.63e-15!102;UBERON:0002346!4.19e-11!71;UBERON:0003075!4.19e-11!71;UBERON:0007284!4.19e-11!71;UBERON:0001017!2.33e-10!73;UBERON:0005743!2.33e-10!73;UBERON:0000073!3.51e-10!75;UBERON:0001016!3.51e-10!75;UBERON:0000033!3.77e-09!63;UBERON:0001049!2.12e-07!52;UBERON:0005068!2.12e-07!52;UBERON:0006241!2.12e-07!52;UBERON:0007135!2.12e-07!52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003076,3.02e-16,12;UBERON:0003057,3.02e-16,12;UBERON:0000073,2.35e-13,54;UBERON:0001017,4.77e-13,73;UBERON:0002240,1.54e-12,6;UBERON:0005174,1.54e-12,6;UBERON:0001137,1.54e-12,6;UBERON:0001016,1.57e-12,75;UBERON:0004121,1.07e-11,95;UBERON:0000924,1.07e-11,95;UBERON:0006601,1.07e-11,95;UBERON:0001049,3.26e-11,52;UBERON:0005068,3.26e-11,52;UBERON:0006241,3.26e-11,52;UBERON:0007135,3.26e-11,52;UBERON:0002346,1.77e-10,64;UBERON:0003075,1.77e-10,64;UBERON:0007284,1.77e-10,64;UBERON:0001948,1.92e-10,5;UBERON:0002315,1.92e-10,5;UBERON:0010371,1.18e-09,73;UBERON:0002950,7.14e-09,4;UBERON:0001891,7.14e-09,4;UBERON:0009616,7.14e-09,4;UBERON:0010286,7.14e-09,4;UBERON:0004684,3.86e-07,3;UBERON:0002275,3.86e-07,3;UBERON:0002020,3.98e-07,34;UBERON:0007023,8.56e-07,51;UBERON:0002038,8.57e-07,3;UBERON:0009663,8.57e-07,3;UBERON:0009661,8.57e-07,3;UBERON:0000125,8.57e-07,3;UBERON:0002308,8.57e-07,3;UBERON:0002257,9.40e-07,3 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0.33575854382378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510259740906419,0,0,0.95995453676044,0.45881856213434,1.14846392823004,0.430761996159075,0.646413698057667,0,0,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0.183546752161682,0,0,0.659058548203415,0.388859798148567,0,0,0,0,0,0,0,0,0,0.528990979272033,0.633831403506179,0.338844532069132,0,4.04954872776629,10.8775299882367,4.2628806896766,0.898800331555214,0.384218305321555,0,0.135005938331691,0.420649922702764,2.57085885963423,2.65042249141936,0.122490799214954,0.191690942036473,0,6.60695285996332,1.78762273319263,2.15049146558741,0.263772575460388,0.274462930807229,0.52091337055676,2.23346399201105,2.8138130501584,1.37518422999129,2.65165726926301,2.56269025438385,1.3047961207771,0,0.377857800533928,0,0,0,0.539703191637817,0,0,0.140444420131752,0.340860645156116,0,0.35333957451034,0.281686839553361,0,0,0,0,0,0,0,1.8125651855302,0.445326417194474,0.520455980298408,0.304465478312141,0.230615497256059,0.60289056221049,0.823120949949934,0,0.494389935468748,0,0,0.161766849947409,0,0,0,1.46390398505774,2.09446706813455,0,0,0,0,5.69204429738326,0,0.251308704225729,1.21677024134594,1.53429274398198,2.70124457927428,0.324482526135515,0.407357455401265,0,0,0.841767423545896,0.130120442962704,0.459804208866946,0.180062129805349,0.30140963567143,0.272145996605311,0.896796041993948,1.78033276663485,4.9153640440413,0,0,0,0,0.278047249225598,0,0.411564272815887,0.995171334092466,0,0,0,0.414251545071004,0,0,0.473489471170421,0.196764231747404,0.308534225774757,0,0,0.116765342367169,0,0,0,0,0,0,1.05144974282064,0,0,0,0,0.464473343720877,0,0.201683524623343,0,0,0,0,0,0,0,0,0,0,0.569003702859245,0.456994050438915,0,2.03651327845314,0,0.49095073923223,0.126473074248515,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,1.50791283939272,2.17562273527484,0.983528546038072,5.24279817978992,5.9403718295483,4.45404409050372,0,0,0.315508219416257,0,0.646270193198397,0.238968797952552,1.11399337041197,1.69845918473299,0,0,0.395287777946524,3.21321316421807,0.425820255624806,0.890328018336276,0.488660878060728,1.15479086080775,0,0,0.302323556964751,0.188605079755898,0,0,0,0,0,0.316036757935816,0,0,0.680879211507576,0,0.129358683782755,0,0,0,0,0,6.33613611772018,1.48282449604674,0,0.16488625294148,0.161464426695906,0.0603129249281559,0.119372344003136,0,0.291480836629851,5.93360966433631,0,0,0,0,0,0,0,0,0,0.954670618015114,0.158167996790568,0,0,0,0,0,0.0826534557253359,0.26175594198403,0,0.621339313086926,1.12738587736838,0.299033092087958,0.165458490457098,0.777804753376191,0.258319646955462,0.337912250981556,0.117357238645754,0.781226309063701,1.04859344425711,0.483168241652012,0,0,0,0,0,0,0.198681354781265,0,0,0,0,0,0,0,0,0,0.665957860122194,1.25599399253266,0.671538465456314,0,5.44279178808428,0.36630324853453,0.214368379079066,0.501572104035363,0,0.460325236507177,0.572895513439397,1.20297227640581,2.05524755931193,0,0,0.45032120322422,0.453142408984205,2.07104124700728,0.207574695168353,0.399024873401031,0,0.243106717068294,0,0.183843508450014,0.222246727801615,0.206035057238894,0.320919209591815,0.252697211763798,0,0,0.0936415074698824,0.320125762024346,0.17230640686684,0,0.231768651889711,0.192909220463705,0,0.147198920134397,0.342869252385415,0.354951612318675,0.238436189947321,0.145346416632329,0.188218760830661,0.169229215783353,0.182927972872773,0,0.271608227691724,0.561142271657738,0.118635018124174,0.0985044823755635,0.409231043169689,0.154936841185966,0.385813221962283,0.249810577937946,0,0.214871054048298,0.57386499620653,0.220591419119515,0.463735671240843 | |||
|short_description=p4@Stac2 | |||
}} |
Revision as of 21:46, 12 September 2013
Short description: | p4@Stac2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Stac2_5end |
Coexpression cluster: | MCL_coexpression_mm9:2749 |
Association with transcript: | 170bp_to_ENSMUST00000017544, NM_146028, uc007lfl.1_5end |
EntrezGene: | Stac2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.08e-09 | 23 |
neuroblast (sensu Vertebrata) | 7.08e-09 | 23 |
bone marrow cell | 9.85e-08 | 3 |
mesenchymal stem cell of the bone marrow | 9.85e-08 | 3 |
neuron | 9.96e-08 | 33 |
neuronal stem cell | 9.96e-08 | 33 |
neuroblast | 9.96e-08 | 33 |
electrically signaling cell | 9.96e-08 | 33 |
raphe nuclei neuron | 3.86e-07 | 3 |
neuron of the substantia nigra | 8.57e-07 | 3 |
neuron of the ventral spinal cord | 9.40e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
posterior neural tube | 3.02e-16 | 12 |
chordal neural plate | 3.02e-16 | 12 |
regional part of nervous system | 2.35e-13 | 54 |
central nervous system | 4.77e-13 | 73 |
spinal cord | 1.54e-12 | 6 |
dorsal region element | 1.54e-12 | 6 |
dorsum | 1.54e-12 | 6 |
nervous system | 1.57e-12 | 75 |
ectoderm-derived structure | 1.07e-11 | 95 |
ectoderm | 1.07e-11 | 95 |
presumptive ectoderm | 1.07e-11 | 95 |
neural tube | 3.26e-11 | 52 |
neural rod | 3.26e-11 | 52 |
future spinal cord | 3.26e-11 | 52 |
neural keel | 3.26e-11 | 52 |
neurectoderm | 1.77e-10 | 64 |
neural plate | 1.77e-10 | 64 |
presumptive neural plate | 1.77e-10 | 64 |
regional part of spinal cord | 1.92e-10 | 5 |
gray matter of spinal cord | 1.92e-10 | 5 |
ecto-epithelium | 1.18e-09 | 73 |
regional part of midbrain | 7.14e-09 | 4 |
midbrain | 7.14e-09 | 4 |
presumptive midbrain | 7.14e-09 | 4 |
midbrain neural tube | 7.14e-09 | 4 |
raphe nuclei | 3.86e-07 | 3 |
reticular formation | 3.86e-07 | 3 |
gray matter | 3.98e-07 | 34 |
adult organism | 8.56e-07 | 51 |
substantia nigra | 8.57e-07 | 3 |
telencephalic nucleus | 8.57e-07 | 3 |
midbrain nucleus | 8.57e-07 | 3 |
neural nucleus | 8.57e-07 | 3 |
nucleus of brain | 8.57e-07 | 3 |
ventral horn of spinal cord | 9.40e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.