Coexpression cluster:C1685: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 3: | Line 3: | ||
|full_id=C1685_immature_CD14_Eosinophils_CD34_migratory_lymphoma_Neutrophils | |full_id=C1685_immature_CD14_Eosinophils_CD34_migratory_lymphoma_Neutrophils | ||
|id=C1685 | |id=C1685 | ||
|ontology_enrichment_celltype=CL:0000738!1. | |ontology_enrichment_celltype=CL:0000738!1.48e-49!136;CL:0000037!1.71e-42!168;CL:0000566!1.71e-42!168;CL:0002032!3.31e-40!161;CL:0000837!3.31e-40!161;CL:0000988!1.91e-39!177;CL:0002031!1.96e-38!120;CL:0002087!3.59e-37!115;CL:0000766!1.68e-33!72;CL:0000557!4.96e-30!67;CL:0000763!4.31e-28!108;CL:0000049!4.31e-28!108;CL:0000473!3.44e-27!48;CL:0000234!3.44e-27!48;CL:0000839!5.40e-27!66;CL:0002009!9.33e-27!61;CL:0002194!2.03e-25!59;CL:0000576!2.03e-25!59;CL:0000040!2.03e-25!59;CL:0000559!2.03e-25!59;CL:0000860!3.58e-25!42;CL:0002057!3.58e-25!42;CL:0000542!6.84e-11!53;CL:0000051!6.84e-11!53;CL:0000838!1.08e-10!52;CL:0002242!3.14e-10!55;CL:0000325!1.32e-08!87;CL:0000451!9.64e-08!10;CL:0000945!7.54e-07!24;CL:0000826!7.54e-07!24 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0002390! | |ontology_enrichment_uberon=UBERON:0002390!1.61e-29!98;UBERON:0003061!1.61e-29!98;UBERON:0002193!1.08e-28!108;UBERON:0002405!1.40e-24!93;UBERON:0002371!2.53e-23!76;UBERON:0001474!3.52e-22!82;UBERON:0004765!3.89e-19!90;UBERON:0001434!4.16e-14!100 | ||
|pathway_enrichment=2.08996656875732e-05;0.0132294883802338;2;131;IL-5 up reg. targets (Netpath):NetPath_17 | |pathway_enrichment=2.08996656875732e-05;0.0132294883802338;2;131;IL-5 up reg. targets (Netpath):NetPath_17 | ||
|tf_chipseq_enrich=CCNT2#905;4:5.06896126157011:0.00270999809128077:0.0148923699371361!CTCF#10664;4:4.28820509846002:0.00515201558824328:0.0239259796354013!E2F1#1869;4:3.92591137190346:0.00721498454710636:0.0298709970314454!E2F4#1874;3:7.60083618917066:0.00435414736037571:0.0206476024414402!E2F6#1876;4:4.01372458535791:0.00663211823393388:0.0282899769740982!EGR1#1958;5:4.98817909481014:0.000323739800059071:0.00330541215938697!ETS1#2113;3:5.8372565533214:0.00925327904563143:0.03496899733126!MEF2A#4205;3:11.2459385457864:0.00139936678741195:0.00910128707874682!MYC#4609;4:4.17782549728752:0.00569196903682344:0.0256732262680546!NFKB1#4790;5:5.48806342419384:0.000200816284746232:0.00238873029186921!POU2F2#5452;3:5.46367443464551:0.0111565009446978:0.0410070318210491!REST#5978;3:5.79001722967681:0.00946878869443394:0.0356917321419853!RFX5#5993;3:7.22874649631706:0.0050291827895866:0.0234640527746989!SMARCB1#6598;4:14.6021726249259:4.30486693344344e-05:0.00076814624579173!TAF7#6879;3:6.85984164295435:0.00584328640701904:0.0262412705995296!TCF12#6938;3:6.38067894131185:0.00718516865325884:0.0298267748709289!TFAP2A#7020;3:9.91118062382697:0.00202154697751128:0.0117450125046896!TFAP2C#7022;3:6.48553716591613:0.00685895151794:0.0290569925600185!YY1#7528;4:3.92893659988308:0.00719386626991762:0.0298356047718182 | |tf_chipseq_enrich=CCNT2#905;4:5.06896126157011:0.00270999809128077:0.0148923699371361!CTCF#10664;4:4.28820509846002:0.00515201558824328:0.0239259796354013!E2F1#1869;4:3.92591137190346:0.00721498454710636:0.0298709970314454!E2F4#1874;3:7.60083618917066:0.00435414736037571:0.0206476024414402!E2F6#1876;4:4.01372458535791:0.00663211823393388:0.0282899769740982!EGR1#1958;5:4.98817909481014:0.000323739800059071:0.00330541215938697!ETS1#2113;3:5.8372565533214:0.00925327904563143:0.03496899733126!MEF2A#4205;3:11.2459385457864:0.00139936678741195:0.00910128707874682!MYC#4609;4:4.17782549728752:0.00569196903682344:0.0256732262680546!NFKB1#4790;5:5.48806342419384:0.000200816284746232:0.00238873029186921!POU2F2#5452;3:5.46367443464551:0.0111565009446978:0.0410070318210491!REST#5978;3:5.79001722967681:0.00946878869443394:0.0356917321419853!RFX5#5993;3:7.22874649631706:0.0050291827895866:0.0234640527746989!SMARCB1#6598;4:14.6021726249259:4.30486693344344e-05:0.00076814624579173!TAF7#6879;3:6.85984164295435:0.00584328640701904:0.0262412705995296!TCF12#6938;3:6.38067894131185:0.00718516865325884:0.0298267748709289!TFAP2A#7020;3:9.91118062382697:0.00202154697751128:0.0117450125046896!TFAP2C#7022;3:6.48553716591613:0.00685895151794:0.0290569925600185!YY1#7528;4:3.92893659988308:0.00719386626991762:0.0298356047718182 | ||
|tfbs_overrepresentation=0.23317,0.0958562,0.020593,0.078254,0.310241,0.43203,0.0706464,0.5903,0.0539364,0.0424746,0.221396,0.0685476,0.294377,0.201017,0.235304,0.101024,0.223746,0.158251,0.0865245,0.173528,0.29418,0.00186042,0.00924498,0.153106,0.0683222,0.332688,0.00748287,0.146582,0.227906,0.150721,0.31768,0.182756,0.0298713,0.322378,0.108398,0.136785,0.0475906,0.070583,0.192426,0.108683,0.155571,0.0406818,0.222325,0.287476,0.193292,3.70664e-05,0.0625547,0.28382,0.178503,0.193726,0.243359,0.0886583,0.114185,0.150136,0.308837,0.0632035,0.172598,0.328738,0.00844306,0.169687,0.0485674,0.236408,0.174369,0.123348,0.0892839,0.0827236,0.164127,0.0980005,0.139298,0.262613,0.0465392,0.110232,0.143944,0.190944,0.012429,0.0283664,0.155593,0.0717582,0.0613084,0.0120583,0.154245,0.348799,0.0698251,0.00120371,0.00286949,0.38341,0.104918,0.323505,0.00543949,0.102375,0.138802,0.0812726,0.153861,0.0777027,0.138224,0.0181276,0.0613695,0.242703,0.149747,0.413729,0.0939617,0.102185,0.225088,0.0610111,0.337778,0.0672793,0.109136,0.497282,0.228612,0.097251,0.285407,0.0560173,0.00268249,0.0293017,0.162943,0.0556189,0.0336673,0.0926302,0.026397,0.13579,0.262107,0.331577,0.222452,0.138843,0.164723,0.277102,0.146529,0.0245339,0.136609,0.00196256,0.0973103,0.121587,0.0935301,0.0376876,0.200735,0.173595,0.105753,0.0905147,0.0544577,0.0065834,0.037671,0.203496,0.316207,0.0331631,0.779726,0.112838,0.159217,0.1364,0.0640569,0.193163,0.0545278,0.227801,0.282656,0.0439093,0.070163,0.188135,0.121467,0.350865,0.0846706,0.0555742,0.349932,0.153706,0.186743,0.23397,0.412853,0.183121,0.065826,0.203135,0.0663482,0.129698,0.281162,0.218835,0.0876655,0.0885874,0.129639,0.145577,0.22277,0.284267,0.0432639,0.0586816,0.00322219,0.195671,0.0452583,0.185103,0.11983,0.190123,0.286036,0.0660586,0.134265,0.272191,0.172119,0.292239,0.196376,0.351465,0.18064,0.0772176,0.126988,0.0984435,0.110187,0.176022,0.144361,0.0986228,0.0508565,0.0989516,0.21691,1.00918e-06,0.412989,0.240045,0.319604,0.000369046,0.0752697,0.167805,0.193654,0.180992,0.464566,0.0388796,0.0367027,0.162511,0.102771,0.165687,0.225173,0.540012,0.246322,0.253699,0.120044,0.201982,0.220536,0.139142,0.0987108,0.09782,0.167847,0.0488185,0.0687568,0.124225,0.1547,0.150448,0.0774663,0.0928873,0.00351842,0.331711,0.285222,0.511,0.158559,0.134615,0.186192,0.217494,0.132125,0.179065,0.0442413,0.187334,0.250769,0.289141,0.289982,0.157983,0.158078,0.251693,0.172268,0.0551792,0.113261,0.180042,0.101058,0.274448,0.0363385,0.204241,0.0568578,0.131428,0.131579,0.148683,0.188945,0.122666,0.419402,0.103245,0.387442,0.0778535,0.14011,0.0626022,0.2074,0.182534,0.345431,0.0451674,0.238493,0.161661,0.00975252,0.00725977,0.493893,0.808889,0.396701,0.626645,0.541514,0.460217,0.00600163,0.487888,0.568246,0.144209,0.364364,0.796904,0.410803,0.43779,0.579996,0.569955,0.426202,0.19503,0.292173,0.0406515,0.284119,0.066081,0.176507,0.488132,0.336705,0.604733,0.545464,0.277796,0.0989863,0.00919554,0.346724,0.537972,0.225841,0.302575,0.385794,0.417358,0.450485,0.0986962,0.470142,0.344006,0.688397,0.0708373,0.426591,0.467379,0.175413,0.437202,0.628658,0.761311,0.592924,0.438692,0.293448,0.251384,0.541742,0.762222,0.0740284,0.285074,0.870229,0.0273441,0.199887,0.415372,0.362164,0.289863,0.507647,0.365484,0.409489,0.0842683,0.688223,0.338121,0.348378,0.379008,0.423719,0.655494,0.256985,0.109234,0.11883,0.288602,0.446598,0.0355844,0.42637,0.588284,0.284078,0.732646,0.386101,0.628596,0.337121,0.464864,0.861932,0.0740433,0.121457,0.351733,0.256178,0.0635587,0.687274,0.441154,0.15612,0.660832,0.43388,0.483295,0.570706,0.418989,0.0222789,0.239606,0.350461,0.495024,0.307173,0.0332947,0.407051,0.231945,0.666615,0.23106,0.122916,0.0186201,0.493489,0.229501,0.230597,0.195392,0.544572,0.0182796,0.641833,0.383956,0.241286,0.0764074,0.217887,0.393543,0.214395,0.158849,0.379156,0.439833,0.427746,0.156494,0.456725,0.455709,0.199515,0.688249,0.708682,0.427794,0.398041,0.0395012,0.347879,0.0576919,0.593219,0.040963,0.64728,0.0878359,0.319495,0.129773,0.257888,0.616333,0.407113,0.498776,0.152069,0.423517,0.224914,0.268941,0.346389,0.251608,0.365107,0.182645,0.356278,0.295455,0.144104,0.0972855,0.129462,0.486648,0.508875,0.370345,0.512109,0.658411,0.214417,0.818493,0.231805,0.469232,0.113555,0.0910724,3.56731e-05,0.126587,0.0940929,0.22877,0.343849,0.315824,0.0757554,0.621499,0.29873,0.179502,0.43406,0.0715061,0.023355,0.201779,0.214491,0.171725,0.100099,0.102448,0.0474884,0.029672,0.003435,0.421335,0.561724,0.0762646,0.266371,0.183582,0.168118,0.145381,0.140277,0.251925,0.172066,0.0720324,0.00647589,0.19738,0.205854,0.32541,0.301472,0.507714,0.0818982,0.134306,0.108669,0.284804,0.178494,0.338195,0.146979,0.0518509,0.210475,0.294266,0.0790025,0.310539,0.580279,0.203728,0.275452,0.0462024,0.265827,0.141761,0.153627,0.0186891,0.00900184,0.0157141,0.101479,0.00800917,0.272406,0.223952,0.327153,0.0496113,0.20949,0.0730994,0.0857377,0.323267,0.0319907,0.129414,0.157037,0.252398,0.197279,0.146467,0.0912686,0.425114,0.123863,0.218241,0.0242146,0.10708,0.327369,0.0656876,0.12998,0.123097,0.254847,0.300809,0.0898207,0.126545,0.0918749,0.0686325,0.0569043,0.0639461,0.0136328,0.267408,0.312064,0.080156,0.274185,0.53753,0.0545112,0.0359652,0.33844,0.0649137,0.0974216,0.595767,0.195675,0.174786,0.176557,0.396547,0.0472148,0.14949,0.229138,0.0639045,0.141461,0.0900204,0.228387,0.385962,0.0636691,0.296227,0.208788,0.566117,0.00120554,0.430936,0.123626,0.270619,0.132705,0.285556,0.148915,0.233835,0.224471,0.262929,0.223204,0.143824,0.460679,0.11021,0.0775891,0.153079,0.0179567,0.211515,0.125701,0.175283,0.204954,0.209341,0.00383056,0.0185433,0.084895,0.160115,0.0819954,0.10091,0.122658,0.151161,0.228398,0.056055,0.120552,0.102815,0.655862,0.104741,0.335207,0.434016,0.190688,0.299739,0.278645,0.381281,0.0940982,0.0780533,0.00167259,0.0993772,0.274769,0.448923,0.11602,0.344528,0.113233,0.0585992,0.20045,0.274438,0.000298744,0.00280772,0.319826,0.336512,0.173868,0.109708,0.174594,0.0809806,0.154589,0.0572856,0.122767,0.0749261,0.176858,0.114361,0.347759,0.242462,0.0620267,0.211111,0.0738743,0.0882327,0.183058,0.150073,0.270522,0.0151089,0.0663381,0.0934526,0.359135,0.123404,0.430769,0.240825,0.3033,0.336623,0.163542,0.483244,0.27134,0.500871,0.239667,0.10226,0.29809,0.235147,0.689826,0.0330886,0.116923,0.148426,0.0983658,0.228743,0.238223,0.156976,0.244789,0.267391,0.301441,0.21807,0.350528,0.382904,0.432408,0.190404,0.135865,0.488841,0.18137,0.180609,0.291283,0.00431063,0.153023,0.400137,0.37958,0.22307,0.160699,0.391307,0.166736,0.181253,0.0422294,0.00381527,0.0112951,0.0616692,0.262486,0.294204,0.131936,0.288826,0.246621,0.0254386,0.0333587,0.0965376,0.377203,0.279263,0.336564,0.35463,0.581771,0.00625883,0.0594155,0.00218776,0.208795,0.0713793,0.212621,0.594469,0.53612,0.629713,0.581874,0.355154,0.0442628,0.251388,0.537088,0.603804,0.629445,0.306963,0.569605,0.526495,0.580285,0.550495,0.0162156,0.248142,0.0700912,0.00164324,0.561689,0.306829,0.685628,0.0759172,0.0367384,0.000273281,0.00854007,0.349068,0.344004,0.0238618,0.0494957,0.427789,0.326931,0.151737,0.0238314,0.111685,0.258394,0.277222,0.432123,0.172498,0.295122,0.149969,0.28382,0.392155,0.626931,0.371758,0.109303,0.562417,0.0076806,0.00360419,0.254547,0.204391,0.249366,0.316342,0.133485,0.0445246,0.255876,0.660884,0.0456484,0.00916366,0.0396564,0.315485,0.311289,0.318577,0.4488,0.088424,0.0147352,0.511254,0.553178,0.246387,0.0272681,0.587237,0.155054,0.466978,0.166402,0.257848,0.353942,0.192234,0.427276,0.747776,0.466967,0.283682,0.424668,0.111989,0.474058,0.583101,0.702164,0.477016,0.831202,0.498956,0.792095,0.55798,0.00861989,0.000120262,0.723248,0.34194,0.592696,0.592314,0.644904,0.00764721,0.423117,0.317485,0.633504,0.220564,0.845182,0.262394,0.307462,0.135076,0.133253,0.298027,0.274593,0.147074,0.183857,0.128394,0.583627,0.531474,0.364391,0.200667,0.174119,0.361524,0.31558,0.000229189,0.54408,0.62698,0.513592,0.415367,0.240393,0.45585,0.36864,0.000154339,0.0241542,0.453004,0.0289228,0.557093,0.330982,0.382214,0.553161,0.639572,0.11429,0.339393,0.0325448,0.306231,0.298354,0.646049,0.0202712,0.457741,0.273855,0.426239,0.162155,0.656093,0.572661,0.412586,0.178696,0.41502,0.55475,0.66153,0.523749,0.499347,0.307426,0.790204,0.196912,0.490527,0.714189,0.44799,0.0897597,0.318338,0.276338,0.126433,0.102654,0.318174,0.0555558,0.295666,0.393022,0.293641,0.116969,0.401231,0.255983,0.297663,0.256708,0.338258,0.322052,0.145568,0.153833,0.261242,0.38389,0.54721,0.388459,0.321362,0.627637,0.280757,0.301366,0.340343,0.343265,0.154685,0.462092,0.00846526,0.308589,0.291523,0.19697,0.00645096,0.0537285,0.15063,0.198077,0.0439565,0.348739,0.419895,0.138495,0.208834,0.32256,0.377566,0.342366,0.109684,0.322704,0.403482,0.181288,0.230841,0.352328,0.255358,0.351665,0.265112,0.0633313,0.10772,0.0854747,0.0747609,0.406458,0.312881,0.512825,0.244656,0.192188,0.158985,0.174153,0.0972854,0.333309,0.249919,0.339517,0.303699,0.198326,0.394084,0.458518,0.282501,0.252005,0.390891,0.238377,0.334983,0.197875,0.287909,0.289389,0.117618,0.392533,0.396962,0.316002,0.330317,0.321404,0.225079,0.300542,0.379651,0.185715,0.345505,0.375521,0.271405,0.0544127,0.221943,0.306427,0.367733,0.246925,0.208775,0.390438,0.343014,0.270094,0.276922,0.156279,0.313647,0.461742,0.422872,0.336468,0.13327,0.0552906,0.17149,0.0877361,0.0880065,0.238969,0.126615,0.0669467,0.0879453,0.474066,0.0919467,0.326779,0.292869,0.358198,0.29552,0.131776,0.158116,0.104606,0.194814,0.104167,0.168186,0.108081,0.123829,0.205215,0.175247,0.0724304,0.109077,0.144842,0.0604892,0.214671,0.316879,0.442567,0.430541,0.508546,0.224871,0.398887,0.389061,0.310732,0.349611,0.445995,0.385709,0.278202,0.426488,0.400591,0.209809,0.253154,0.319519,0.309489,0.430805,0.362154,0.480785,0.185476,0.336314,0.344469,0.184651,0.303359,0.297596,0.42392,0.107309,0.380826,0.259046,0.345068,0.151046,0.483953,0.347171,0.321735,0.15463,0.13907,0.470121,0.269432,0.250466,0.409882,0.115686,0.408975,0.162633,0.342661,0.27567,0.248127,0.33299,0.384731,0.319112,0.172492 | |tfbs_overrepresentation=0.23317,0.0958562,0.020593,0.078254,0.310241,0.43203,0.0706464,0.5903,0.0539364,0.0424746,0.221396,0.0685476,0.294377,0.201017,0.235304,0.101024,0.223746,0.158251,0.0865245,0.173528,0.29418,0.00186042,0.00924498,0.153106,0.0683222,0.332688,0.00748287,0.146582,0.227906,0.150721,0.31768,0.182756,0.0298713,0.322378,0.108398,0.136785,0.0475906,0.070583,0.192426,0.108683,0.155571,0.0406818,0.222325,0.287476,0.193292,3.70664e-05,0.0625547,0.28382,0.178503,0.193726,0.243359,0.0886583,0.114185,0.150136,0.308837,0.0632035,0.172598,0.328738,0.00844306,0.169687,0.0485674,0.236408,0.174369,0.123348,0.0892839,0.0827236,0.164127,0.0980005,0.139298,0.262613,0.0465392,0.110232,0.143944,0.190944,0.012429,0.0283664,0.155593,0.0717582,0.0613084,0.0120583,0.154245,0.348799,0.0698251,0.00120371,0.00286949,0.38341,0.104918,0.323505,0.00543949,0.102375,0.138802,0.0812726,0.153861,0.0777027,0.138224,0.0181276,0.0613695,0.242703,0.149747,0.413729,0.0939617,0.102185,0.225088,0.0610111,0.337778,0.0672793,0.109136,0.497282,0.228612,0.097251,0.285407,0.0560173,0.00268249,0.0293017,0.162943,0.0556189,0.0336673,0.0926302,0.026397,0.13579,0.262107,0.331577,0.222452,0.138843,0.164723,0.277102,0.146529,0.0245339,0.136609,0.00196256,0.0973103,0.121587,0.0935301,0.0376876,0.200735,0.173595,0.105753,0.0905147,0.0544577,0.0065834,0.037671,0.203496,0.316207,0.0331631,0.779726,0.112838,0.159217,0.1364,0.0640569,0.193163,0.0545278,0.227801,0.282656,0.0439093,0.070163,0.188135,0.121467,0.350865,0.0846706,0.0555742,0.349932,0.153706,0.186743,0.23397,0.412853,0.183121,0.065826,0.203135,0.0663482,0.129698,0.281162,0.218835,0.0876655,0.0885874,0.129639,0.145577,0.22277,0.284267,0.0432639,0.0586816,0.00322219,0.195671,0.0452583,0.185103,0.11983,0.190123,0.286036,0.0660586,0.134265,0.272191,0.172119,0.292239,0.196376,0.351465,0.18064,0.0772176,0.126988,0.0984435,0.110187,0.176022,0.144361,0.0986228,0.0508565,0.0989516,0.21691,1.00918e-06,0.412989,0.240045,0.319604,0.000369046,0.0752697,0.167805,0.193654,0.180992,0.464566,0.0388796,0.0367027,0.162511,0.102771,0.165687,0.225173,0.540012,0.246322,0.253699,0.120044,0.201982,0.220536,0.139142,0.0987108,0.09782,0.167847,0.0488185,0.0687568,0.124225,0.1547,0.150448,0.0774663,0.0928873,0.00351842,0.331711,0.285222,0.511,0.158559,0.134615,0.186192,0.217494,0.132125,0.179065,0.0442413,0.187334,0.250769,0.289141,0.289982,0.157983,0.158078,0.251693,0.172268,0.0551792,0.113261,0.180042,0.101058,0.274448,0.0363385,0.204241,0.0568578,0.131428,0.131579,0.148683,0.188945,0.122666,0.419402,0.103245,0.387442,0.0778535,0.14011,0.0626022,0.2074,0.182534,0.345431,0.0451674,0.238493,0.161661,0.00975252,0.00725977,0.493893,0.808889,0.396701,0.626645,0.541514,0.460217,0.00600163,0.487888,0.568246,0.144209,0.364364,0.796904,0.410803,0.43779,0.579996,0.569955,0.426202,0.19503,0.292173,0.0406515,0.284119,0.066081,0.176507,0.488132,0.336705,0.604733,0.545464,0.277796,0.0989863,0.00919554,0.346724,0.537972,0.225841,0.302575,0.385794,0.417358,0.450485,0.0986962,0.470142,0.344006,0.688397,0.0708373,0.426591,0.467379,0.175413,0.437202,0.628658,0.761311,0.592924,0.438692,0.293448,0.251384,0.541742,0.762222,0.0740284,0.285074,0.870229,0.0273441,0.199887,0.415372,0.362164,0.289863,0.507647,0.365484,0.409489,0.0842683,0.688223,0.338121,0.348378,0.379008,0.423719,0.655494,0.256985,0.109234,0.11883,0.288602,0.446598,0.0355844,0.42637,0.588284,0.284078,0.732646,0.386101,0.628596,0.337121,0.464864,0.861932,0.0740433,0.121457,0.351733,0.256178,0.0635587,0.687274,0.441154,0.15612,0.660832,0.43388,0.483295,0.570706,0.418989,0.0222789,0.239606,0.350461,0.495024,0.307173,0.0332947,0.407051,0.231945,0.666615,0.23106,0.122916,0.0186201,0.493489,0.229501,0.230597,0.195392,0.544572,0.0182796,0.641833,0.383956,0.241286,0.0764074,0.217887,0.393543,0.214395,0.158849,0.379156,0.439833,0.427746,0.156494,0.456725,0.455709,0.199515,0.688249,0.708682,0.427794,0.398041,0.0395012,0.347879,0.0576919,0.593219,0.040963,0.64728,0.0878359,0.319495,0.129773,0.257888,0.616333,0.407113,0.498776,0.152069,0.423517,0.224914,0.268941,0.346389,0.251608,0.365107,0.182645,0.356278,0.295455,0.144104,0.0972855,0.129462,0.486648,0.508875,0.370345,0.512109,0.658411,0.214417,0.818493,0.231805,0.469232,0.113555,0.0910724,3.56731e-05,0.126587,0.0940929,0.22877,0.343849,0.315824,0.0757554,0.621499,0.29873,0.179502,0.43406,0.0715061,0.023355,0.201779,0.214491,0.171725,0.100099,0.102448,0.0474884,0.029672,0.003435,0.421335,0.561724,0.0762646,0.266371,0.183582,0.168118,0.145381,0.140277,0.251925,0.172066,0.0720324,0.00647589,0.19738,0.205854,0.32541,0.301472,0.507714,0.0818982,0.134306,0.108669,0.284804,0.178494,0.338195,0.146979,0.0518509,0.210475,0.294266,0.0790025,0.310539,0.580279,0.203728,0.275452,0.0462024,0.265827,0.141761,0.153627,0.0186891,0.00900184,0.0157141,0.101479,0.00800917,0.272406,0.223952,0.327153,0.0496113,0.20949,0.0730994,0.0857377,0.323267,0.0319907,0.129414,0.157037,0.252398,0.197279,0.146467,0.0912686,0.425114,0.123863,0.218241,0.0242146,0.10708,0.327369,0.0656876,0.12998,0.123097,0.254847,0.300809,0.0898207,0.126545,0.0918749,0.0686325,0.0569043,0.0639461,0.0136328,0.267408,0.312064,0.080156,0.274185,0.53753,0.0545112,0.0359652,0.33844,0.0649137,0.0974216,0.595767,0.195675,0.174786,0.176557,0.396547,0.0472148,0.14949,0.229138,0.0639045,0.141461,0.0900204,0.228387,0.385962,0.0636691,0.296227,0.208788,0.566117,0.00120554,0.430936,0.123626,0.270619,0.132705,0.285556,0.148915,0.233835,0.224471,0.262929,0.223204,0.143824,0.460679,0.11021,0.0775891,0.153079,0.0179567,0.211515,0.125701,0.175283,0.204954,0.209341,0.00383056,0.0185433,0.084895,0.160115,0.0819954,0.10091,0.122658,0.151161,0.228398,0.056055,0.120552,0.102815,0.655862,0.104741,0.335207,0.434016,0.190688,0.299739,0.278645,0.381281,0.0940982,0.0780533,0.00167259,0.0993772,0.274769,0.448923,0.11602,0.344528,0.113233,0.0585992,0.20045,0.274438,0.000298744,0.00280772,0.319826,0.336512,0.173868,0.109708,0.174594,0.0809806,0.154589,0.0572856,0.122767,0.0749261,0.176858,0.114361,0.347759,0.242462,0.0620267,0.211111,0.0738743,0.0882327,0.183058,0.150073,0.270522,0.0151089,0.0663381,0.0934526,0.359135,0.123404,0.430769,0.240825,0.3033,0.336623,0.163542,0.483244,0.27134,0.500871,0.239667,0.10226,0.29809,0.235147,0.689826,0.0330886,0.116923,0.148426,0.0983658,0.228743,0.238223,0.156976,0.244789,0.267391,0.301441,0.21807,0.350528,0.382904,0.432408,0.190404,0.135865,0.488841,0.18137,0.180609,0.291283,0.00431063,0.153023,0.400137,0.37958,0.22307,0.160699,0.391307,0.166736,0.181253,0.0422294,0.00381527,0.0112951,0.0616692,0.262486,0.294204,0.131936,0.288826,0.246621,0.0254386,0.0333587,0.0965376,0.377203,0.279263,0.336564,0.35463,0.581771,0.00625883,0.0594155,0.00218776,0.208795,0.0713793,0.212621,0.594469,0.53612,0.629713,0.581874,0.355154,0.0442628,0.251388,0.537088,0.603804,0.629445,0.306963,0.569605,0.526495,0.580285,0.550495,0.0162156,0.248142,0.0700912,0.00164324,0.561689,0.306829,0.685628,0.0759172,0.0367384,0.000273281,0.00854007,0.349068,0.344004,0.0238618,0.0494957,0.427789,0.326931,0.151737,0.0238314,0.111685,0.258394,0.277222,0.432123,0.172498,0.295122,0.149969,0.28382,0.392155,0.626931,0.371758,0.109303,0.562417,0.0076806,0.00360419,0.254547,0.204391,0.249366,0.316342,0.133485,0.0445246,0.255876,0.660884,0.0456484,0.00916366,0.0396564,0.315485,0.311289,0.318577,0.4488,0.088424,0.0147352,0.511254,0.553178,0.246387,0.0272681,0.587237,0.155054,0.466978,0.166402,0.257848,0.353942,0.192234,0.427276,0.747776,0.466967,0.283682,0.424668,0.111989,0.474058,0.583101,0.702164,0.477016,0.831202,0.498956,0.792095,0.55798,0.00861989,0.000120262,0.723248,0.34194,0.592696,0.592314,0.644904,0.00764721,0.423117,0.317485,0.633504,0.220564,0.845182,0.262394,0.307462,0.135076,0.133253,0.298027,0.274593,0.147074,0.183857,0.128394,0.583627,0.531474,0.364391,0.200667,0.174119,0.361524,0.31558,0.000229189,0.54408,0.62698,0.513592,0.415367,0.240393,0.45585,0.36864,0.000154339,0.0241542,0.453004,0.0289228,0.557093,0.330982,0.382214,0.553161,0.639572,0.11429,0.339393,0.0325448,0.306231,0.298354,0.646049,0.0202712,0.457741,0.273855,0.426239,0.162155,0.656093,0.572661,0.412586,0.178696,0.41502,0.55475,0.66153,0.523749,0.499347,0.307426,0.790204,0.196912,0.490527,0.714189,0.44799,0.0897597,0.318338,0.276338,0.126433,0.102654,0.318174,0.0555558,0.295666,0.393022,0.293641,0.116969,0.401231,0.255983,0.297663,0.256708,0.338258,0.322052,0.145568,0.153833,0.261242,0.38389,0.54721,0.388459,0.321362,0.627637,0.280757,0.301366,0.340343,0.343265,0.154685,0.462092,0.00846526,0.308589,0.291523,0.19697,0.00645096,0.0537285,0.15063,0.198077,0.0439565,0.348739,0.419895,0.138495,0.208834,0.32256,0.377566,0.342366,0.109684,0.322704,0.403482,0.181288,0.230841,0.352328,0.255358,0.351665,0.265112,0.0633313,0.10772,0.0854747,0.0747609,0.406458,0.312881,0.512825,0.244656,0.192188,0.158985,0.174153,0.0972854,0.333309,0.249919,0.339517,0.303699,0.198326,0.394084,0.458518,0.282501,0.252005,0.390891,0.238377,0.334983,0.197875,0.287909,0.289389,0.117618,0.392533,0.396962,0.316002,0.330317,0.321404,0.225079,0.300542,0.379651,0.185715,0.345505,0.375521,0.271405,0.0544127,0.221943,0.306427,0.367733,0.246925,0.208775,0.390438,0.343014,0.270094,0.276922,0.156279,0.313647,0.461742,0.422872,0.336468,0.13327,0.0552906,0.17149,0.0877361,0.0880065,0.238969,0.126615,0.0669467,0.0879453,0.474066,0.0919467,0.326779,0.292869,0.358198,0.29552,0.131776,0.158116,0.104606,0.194814,0.104167,0.168186,0.108081,0.123829,0.205215,0.175247,0.0724304,0.109077,0.144842,0.0604892,0.214671,0.316879,0.442567,0.430541,0.508546,0.224871,0.398887,0.389061,0.310732,0.349611,0.445995,0.385709,0.278202,0.426488,0.400591,0.209809,0.253154,0.319519,0.309489,0.430805,0.362154,0.480785,0.185476,0.336314,0.344469,0.184651,0.303359,0.297596,0.42392,0.107309,0.380826,0.259046,0.345068,0.151046,0.483953,0.347171,0.321735,0.15463,0.13907,0.470121,0.269432,0.250466,0.409882,0.115686,0.408975,0.162633,0.342661,0.27567,0.248127,0.33299,0.384731,0.319112,0.172492 | ||
}} | }} | ||
Revision as of 11:34, 19 October 2012
Full id: C1685_immature_CD14_Eosinophils_CD34_migratory_lymphoma_Neutrophils
Phase1 CAGE Peaks
| Hg19::chr12:72148728..72148739,+ | p3@RAB21 |
| Hg19::chr2:61108695..61108753,+ | p1@REL |
| Hg19::chr2:61108771..61108789,+ | p4@REL |
| Hg19::chr2:61108808..61108821,+ | p3@REL |
| Hg19::chr2:61118914..61118929,+ | p1@AB464350 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
| p.value | FDR | nGenes | nPathway | Name |
|---|---|---|---|---|
| 2.08996656875732e-05 | 0.0132294883802338 | 2 | 131 | IL-5 up reg. targets (Netpath):NetPath_17 |
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| hematopoietic system | 1.61e-29 | 98 |
| blood island | 1.61e-29 | 98 |
| hemolymphoid system | 1.08e-28 | 108 |
| immune system | 1.40e-24 | 93 |
| bone marrow | 2.53e-23 | 76 |
| bone element | 3.52e-22 | 82 |
| skeletal element | 3.89e-19 | 90 |
| skeletal system | 4.16e-14 | 100 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| CCNT2#905 | 4 | 5.06896126157011 | 0.00270999809128077 | 0.0148923699371361 |
| CTCF#10664 | 4 | 4.28820509846002 | 0.00515201558824328 | 0.0239259796354013 |
| E2F1#1869 | 4 | 3.92591137190346 | 0.00721498454710636 | 0.0298709970314454 |
| E2F4#1874 | 3 | 7.60083618917066 | 0.00435414736037571 | 0.0206476024414402 |
| E2F6#1876 | 4 | 4.01372458535791 | 0.00663211823393388 | 0.0282899769740982 |
| EGR1#1958 | 5 | 4.98817909481014 | 0.000323739800059071 | 0.00330541215938697 |
| ETS1#2113 | 3 | 5.8372565533214 | 0.00925327904563143 | 0.03496899733126 |
| MEF2A#4205 | 3 | 11.2459385457864 | 0.00139936678741195 | 0.00910128707874682 |
| MYC#4609 | 4 | 4.17782549728752 | 0.00569196903682344 | 0.0256732262680546 |
| NFKB1#4790 | 5 | 5.48806342419384 | 0.000200816284746232 | 0.00238873029186921 |
| POU2F2#5452 | 3 | 5.46367443464551 | 0.0111565009446978 | 0.0410070318210491 |
| REST#5978 | 3 | 5.79001722967681 | 0.00946878869443394 | 0.0356917321419853 |
| RFX5#5993 | 3 | 7.22874649631706 | 0.0050291827895866 | 0.0234640527746989 |
| SMARCB1#6598 | 4 | 14.6021726249259 | 4.30486693344344e-05 | 0.00076814624579173 |
| TAF7#6879 | 3 | 6.85984164295435 | 0.00584328640701904 | 0.0262412705995296 |
| TCF12#6938 | 3 | 6.38067894131185 | 0.00718516865325884 | 0.0298267748709289 |
| TFAP2A#7020 | 3 | 9.91118062382697 | 0.00202154697751128 | 0.0117450125046896 |
| TFAP2C#7022 | 3 | 6.48553716591613 | 0.00685895151794 | 0.0290569925600185 |
| YY1#7528 | 4 | 3.92893659988308 | 0.00719386626991762 | 0.0298356047718182 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
