FFCP PHASE1:Hg19::chr1:210406165..210406186,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56256 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25236 | |||
|TSSclassifier=strong | |||
|UniProt=Q9NUC0 | |||
|association_with_transcript=-8bp_to_NM_019605,uc001hhy.2_5end | |||
|description=CAGE_peak_4_at_SERTAD4_5end | |||
|id=chr1:210406165..210406186,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.63e-14!254 | |||
|ontology_enrichment_celltype_v019=CL:0000039;1.93e-14;7!CL:0000586;1.93e-14;7!CL:0002541;3.01e-09;3!CL:0000349;1.24e-08;19!CL:0002536;3.58e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.04e-14,7;CL:0000586,1.04e-14,7;CL:0002541,1.71e-09,3;CL:0000349,1.06e-08,19;CL:0000066,1.77e-08,253;CL:0002536,2.83e-07,2;CL:0000242,7.53e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!3.38e-13!143;DOID:305!1.57e-11!106 | |||
|ontology_enrichment_disease_v019=DOID:3095;6.91e-09;22!DOID:2994;6.91e-09;22!DOID:5093;8.98e-08;4!DOID:1612;8.98e-08;4!DOID:305;7.98e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,2.66e-14,143;DOID:305,2.02e-11,106;DOID:3095,6.64e-09,22;DOID:2994,6.64e-09,22;DOID:5093,9.98e-08,4;DOID:1612,9.98e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0000064!2.30e-12!219;UBERON:0004121!1.79e-11!169;UBERON:0000924!3.78e-11!173;UBERON:0006601!3.78e-11!173;UBERON:0001004!8.63e-09!72;UBERON:0004119!1.40e-08!169;UBERON:0000925!1.40e-08!169;UBERON:0006595!1.40e-08!169;UBERON:0000468!2.45e-08!659;UBERON:0000922!9.84e-08!612;UBERON:0000058!1.91e-07!26;UBERON:0000467!2.50e-07!625;UBERON:0000480!3.19e-07!626;UBERON:0005631!3.95e-07!14;UBERON:0000158!3.95e-07!14;UBERON:0006554!3.96e-07!44;UBERON:0000065!4.38e-07!53;UBERON:0000923!5.37e-07!604;UBERON:0005291!5.37e-07!604;UBERON:0006598!5.37e-07!604;UBERON:0002532!5.37e-07!604;UBERON:0002050!6.79e-07!605;UBERON:0005423!6.79e-07!605;UBERON:0000062!8.03e-07!511;UBERON:0001008!8.91e-07!45;UBERON:0000153!9.22e-07!129;UBERON:0007811!9.22e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;3.22e-10;10!UBERON:0000158;3.22e-10;10!UBERON:0003124;3.01e-09;3!UBERON:0000920;3.01e-09;3!UBERON:0000478;3.39e-08;24!UBERON:0001829;1.53e-07;2!UBERON:0002394;3.21e-07;4!UBERON:0003928;3.21e-07;4!UBERON:0002294;6.02e-07;7!UBERON:0001173;6.02e-07;7!UBERON:0000058;6.66e-07;10!UBERON:0001987;7.36e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.61e-15,14;UBERON:0000158,1.61e-15,14;UBERON:0003124,2.74e-14,7;UBERON:0000920,1.71e-09,3;UBERON:0000478,2.64e-08,24;UBERON:0001829,1.63e-07,2;UBERON:0006554,4.91e-07,47;UBERON:0001987,7.63e-07,4;UBERON:0004340,7.63e-07,4;UBERON:0001008,7.83e-07,48 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,2.62129646556207,3.9565046734268,0,0,0,0,0,0,0,0,1.56727360739044,0.286235987131057,0.136874425072884,0.502170558379211,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0.150176892841506,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.443458794925128,0.527008714158756,0.392937226493138,0.364295288292542,0.741568885568859,0,0,0,0,0,0,0.39752481473341,0,0,0,0,0,0,0.516833518338658,0,0.33472061276467,0,0,0,0,0,0.267899184852239,0.673588117878509,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0.12663051166458,0,0,0,0,0,0.24666754841716,0,0.134710672069688,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0.122834317311768,0,0,0,0,0,0,0.125118519871964,0,0,0,0.150238058906597,0.113432183160021,0.179389635688862,0.213557388818567,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0,0.966304265816484,0.272746120590835,0.286804595389004,0,0.132529768321485,0.232387885739037,0.310983165046111,0.504641701751257,0,0,0.643240938192885,0,0,0,0.591534000199219,0.505754070234305,1.20505514941741,0.882351781859152,0.217879444092406,0.71181185733329,0.674156540800822,0.196221465125346,0.769494313892781,0,0,0,0,0,0,0,0.441463099414651,0.122988438543114,0,0,0,0.703702806881416,0.277765335475589,0,0,1.44331342025273,0,0.117408694235822,0,0,0,0,4.29243081047436,0,0,0,0,0.335964256397719,0.425325291727159,0.0895585227028483,0,0,0.492663237895943,0.088048434013226,0.207328115540772,0.288239906833923,0.12624243342638,0.063497894292169,0,0,0,0,0,0.285826432630578,0,0,0.36669142910475,0.646358578788889,0,0,0.797814349754612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0.76228387266739,0,3.86644406388848,0.335032530668698,1.91381625495949,0,0,0,0.12269149171914,0,0,0.207970861530807,0.535286966391485,0.157702415033935,0.117141414992713,0.601892199455438,2.27407504055985,0,0,0.368738337083406,0.0868836144680828,0,0.343143423810856,0,0,0,1.21251028578504,0,2.41912234663744,0,0,0,0,0,0.160853921143607,0,0.154209693802656,0.355123450626254,0,0,0,0.362578348774867,0.40101294060657,0.0920809889358963,0,0,0,1.80479845162965,0.616122696835318,1.56869953835371,1.46139224653261,0.105551628892876,2.27466768141793,0,0.215915916102139,1.54227252690289,0,0,1.27438136522519,0.831076008928724,0.671624264166535,0,0,0.256450125116389,0.328014645699706,0,1.13345112812495,0.640986253728404,0,0,1.30012049207304,0,0.096670718292122,0,0,0,0,0,0,0.0890320356467374,0.165284915360978,0,0.255225424989168,0.2023155617111,0,0,0,0,0,0,0.18532421910392,0,0,0.632758849437452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0.384888450902048,0,0,0.564862804660675,0.43050537267123,1.68471475667626,0.886860307073351,1.60806380144872,0,0,0,0,0,0,0,0,3.20472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0.95497793895076,3.8605408508243,0,0,0,0,0,0,0.597743964753209,0,0,0.613612095012929,0,0,2.3365771298305,1.79021174675609,0,0.0986434056369336,0,0,0,0.0927680981618513,1.99613798001194,2.08342208868187,11.2823399995092,2.89999830173917,1.82069517256799,1.77977555204936,0.945550727071745,3.44743373241465,0,0.694499979733169,0,0,0,0.221158519862449,0,0,0.21787692703798,0.139423744278603,0.846452843541768,0.341826167541004,2.07507513949254,8.7064915077479,1.95565269459615,1.91400695839152,4.21348929648567,1.5991043280559,0,0,0,0,0,0,0,0,0.421996129056054,0,0,0,0.995261931078505,0.0884575645033392,0,0,0.247127877893006,0.417687798021821,0.134802265961354,0.802577647298789,0,0,3.52196314077761,0,0.394584402849391,0,0,0.252746318513952,0,0.414752765588989,0,0.330991955875499,0.313932918407225,0,0,0.138674673013139,0,0.587954384486266,1.48000651186684,0.34945333648406,0,0,0,0,1.35784623083787,0,0,0.411125773940253,0,0.0633107959558787,2.15106521008283,0.480952921509202,0.213452994739353,0.19980960958213,0,0,0,0,0,0.235694034616795,0,0.209205692624666,0,0,0.600420288709789,0.410716136675979,0,0,0,0.279282401272254,0,0.717873024576814,0,0,0,0.0671834724867263,0,0,0,0,0,0.0984274815147488,0,0,0,0.482259445395058,0.412618309791701,0,0,0,0.121499113316049,2.0126081255956,0.157611414598396,0.786818822024972,0.105600336519406,0,1.34340638123612,0,0,0,0,0,0,0,0,0,0.226624183040251,0,0,0.129282956361551,0.39669780522807,0,1.40963004463334,0.213574825135389,0.157204305099666,0.828478110694391,0,0,4.87170393523584,1.27668251554036,0,0,0.306345576763462,0,0,0,0,0.1251909307065,0,0.110929051536852,0.18628920882415,0,0,0.151649117541648,0,0,1.87333962322753,2.3187364577732,0,0.233713309847224,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0.400027764663154,0,0,0,0,0,0.521988583930423,0.453411851024545,0.231522474323834,0.244736704506468,0,0,0,0,0,0,0,0.690860683462397,0,0.138258436151731,0,0,0,0,0.245772908753719,0.211312123358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| |||
|short_description=p4@SERTAD4 | |||
}} |
Revision as of 00:02, 11 January 2014
Short description: | p4@SERTAD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SERTAD4_5end |
Coexpression cluster: | NA |
Association with transcript: | -8bp_to_NM_019605, uc001hhy.2_5end |
EntrezGene: | SERTAD4 |
HGNC: | 25236 |
UniProt: | Q9NUC0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.04e-14 | 7 |
germ cell | 1.04e-14 | 7 |
chorionic membrane mesenchymal stem cell | 1.71e-09 | 3 |
extraembryonic cell | 1.06e-08 | 19 |
epithelial cell | 1.77e-08 | 253 |
amniotic epithelial cell | 2.83e-07 | 2 |
Merkel cell | 7.53e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.61e-15 | 14 |
membranous layer | 1.61e-15 | 14 |
chorion | 2.74e-14 | 7 |
egg chorion | 1.71e-09 | 3 |
extraembryonic structure | 2.64e-08 | 24 |
major salivary gland | 1.63e-07 | 2 |
urinary system structure | 4.91e-07 | 47 |
placenta | 7.63e-07 | 4 |
allantois | 7.63e-07 | 4 |
renal system | 7.83e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 2.66e-14 | 143 |
carcinoma | 2.02e-11 | 106 |
germ cell and embryonal cancer | 6.64e-09 | 22 |
germ cell cancer | 6.64e-09 | 22 |
thoracic cancer | 9.98e-08 | 4 |
breast cancer | 9.98e-08 | 4 |