FFCP PHASE1:Hg19::chr19:10665857..10665900,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:10665857..10665900,- | |||
|coexpression_cluster_id=C234 | |coexpression_cluster_id=C234 | ||
|description=CAGE_peak_at_chr19:10665857..10665900,- | |description=CAGE_peak_at_chr19:10665857..10665900,- | ||
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|ontology_enrichment_celltype=CL:0000244!9.28e-16!4;CL:0000731!9.28e-16!4;CL:0002076!4.59e-14!43;CL:0002621!1.03e-12!3;CL:0002166!1.29e-12!3;CL:0000223!7.43e-11!59;CL:0000066!3.01e-10!254;CL:0002159!6.56e-10!13;CL:0002251!2.82e-08!21;CL:0002368!8.92e-07!13 | |ontology_enrichment_celltype=CL:0000244!9.28e-16!4;CL:0000731!9.28e-16!4;CL:0002076!4.59e-14!43;CL:0002621!1.03e-12!3;CL:0002166!1.29e-12!3;CL:0000223!7.43e-11!59;CL:0000066!3.01e-10!254;CL:0002159!6.56e-10!13;CL:0002251!2.82e-08!21;CL:0002368!8.92e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0002621;8.54e-50;3!CL:0002166;5.15e-23;3!CL:0002251;9.75e-21;20!CL:0002076;6.87e-16;42!CL:0002231;6.14e-07;3!CL:0002328;6.88e-07;3 | |ontology_enrichment_celltype_v019=CL:0002621;8.54e-50;3!CL:0002166;5.15e-23;3!CL:0002251;9.75e-21;20!CL:0002076;6.87e-16;42!CL:0002231;6.14e-07;3!CL:0002328;6.88e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002621,6.12e-50,3;CL:0002166,4.61e-23,3;CL:0002251,1.02e-20,20;CL:0002076,5.42e-19,42;CL:0000223,1.16e-13,58;CL:0000066,5.08e-07,253;CL:0002231,6.14e-07,3;CL:0002328,6.88e-07,3 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:1749!4.30e-09!14 | |ontology_enrichment_disease=DOID:1749!4.30e-09!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;2.72e-11;14 | |ontology_enrichment_disease_v019=DOID:1749;2.72e-11;14 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,3.13e-11,14 | |||
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|ontology_enrichment_uberon_v019=UBERON:0001949;8.54e-50;3!UBERON:0003729;8.60e-32;13!UBERON:0000486;2.99e-22;12!UBERON:0000161;8.07e-22;19!UBERON:0000166;8.07e-22;19!UBERON:0003929;8.13e-22;7!UBERON:0000344;9.75e-21;20!UBERON:0003350;3.50e-19;8!UBERON:0001828;3.50e-19;8!UBERON:0003343;1.22e-17;4!UBERON:0004785;1.22e-17;4!UBERON:0001708;1.57e-17;4!UBERON:0008895;1.57e-17;4!UBERON:0000165;7.53e-15;28!UBERON:0011159;3.15e-14;5!UBERON:0004807;2.23e-12;22!UBERON:0000974;4.30e-12;6!UBERON:0005911;1.19e-10;36!UBERON:0011137;5.81e-07;11!UBERON:0010323;5.81e-07;11!UBERON:0004923;5.88e-07;55!UBERON:0004815;6.88e-07;3!UBERON:0002031;6.88e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0001949;8.54e-50;3!UBERON:0003729;8.60e-32;13!UBERON:0000486;2.99e-22;12!UBERON:0000161;8.07e-22;19!UBERON:0000166;8.07e-22;19!UBERON:0003929;8.13e-22;7!UBERON:0000344;9.75e-21;20!UBERON:0003350;3.50e-19;8!UBERON:0001828;3.50e-19;8!UBERON:0003343;1.22e-17;4!UBERON:0004785;1.22e-17;4!UBERON:0001708;1.57e-17;4!UBERON:0008895;1.57e-17;4!UBERON:0000165;7.53e-15;28!UBERON:0011159;3.15e-14;5!UBERON:0004807;2.23e-12;22!UBERON:0000974;4.30e-12;6!UBERON:0005911;1.19e-10;36!UBERON:0011137;5.81e-07;11!UBERON:0010323;5.81e-07;11!UBERON:0004923;5.88e-07;55!UBERON:0004815;6.88e-07;3!UBERON:0002031;6.88e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,6.12e-50,3;UBERON:0003729,9.18e-32,13;UBERON:0000344,1.02e-20,20;UBERON:0003350,3.09e-19,8;UBERON:0001828,3.09e-19,8;UBERON:0000166,7.52e-19,22;UBERON:0001708,1.45e-17,4;UBERON:0008895,1.45e-17,4;UBERON:0003343,1.57e-17,4;UBERON:0004785,1.57e-17,4;UBERON:0000161,2.02e-16,36;UBERON:0000165,2.50e-14,29;UBERON:0000930,2.50e-14,29;UBERON:0011159,2.95e-14,5;UBERON:0000033,4.15e-14,56;UBERON:0000153,1.04e-12,62;UBERON:0007811,1.04e-12,62;UBERON:0010188,4.81e-12,6;UBERON:0002539,4.81e-12,6;UBERON:0008816,4.81e-12,6;UBERON:0003102,3.58e-10,99;UBERON:0004807,8.22e-10,28;UBERON:0001444,1.70e-08,49;UBERON:0001004,7.12e-08,74;UBERON:0000974,1.42e-07,10;UBERON:0005911,4.18e-07,82;UBERON:0010323,5.64e-07,11;UBERON:0004815,6.88e-07,3;UBERON:0002031,6.88e-07,3 | |||
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| ||
|short_description=p@chr19:10665857..10665900,- | |short_description=p@chr19:10665857..10665900,- | ||
}} | }} |
Latest revision as of 03:08, 26 July 2015
Short description: | p@chr19:10665857..10665900, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:10665857..10665900, - |
Coexpression cluster: | C234_oral_epidermoid_malignant_cervical_ductal_lung_keratoacanthoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelial cell | 6.12e-50 | 3 |
epithelial cell of Malassez | 4.61e-23 | 3 |
epithelial cell of alimentary canal | 1.02e-20 | 20 |
endo-epithelial cell | 5.42e-19 | 42 |
endodermal cell | 1.16e-13 | 58 |
epithelial cell | 5.08e-07 | 253 |
epithelial cell of prostate | 6.14e-07 | 3 |
bronchial epithelial cell | 6.88e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 6.12e-50 | 3 |
mouth mucosa | 9.18e-32 | 13 |
mucosa | 1.02e-20 | 20 |
epithelium of mucosa | 3.09e-19 | 8 |
gingiva | 3.09e-19 | 8 |
oral opening | 7.52e-19 | 22 |
jaw skeleton | 1.45e-17 | 4 |
splanchnocranium | 1.45e-17 | 4 |
mucosa of oral region | 1.57e-17 | 4 |
respiratory system mucosa | 1.57e-17 | 4 |
orifice | 2.02e-16 | 36 |
mouth | 2.50e-14 | 29 |
stomodeum | 2.50e-14 | 29 |
primary subdivision of cranial skeletal system | 2.95e-14 | 5 |
head | 4.15e-14 | 56 |
anterior region of body | 1.04e-12 | 62 |
craniocervical region | 1.04e-12 | 62 |
protuberance | 4.81e-12 | 6 |
pharyngeal arch | 4.81e-12 | 6 |
embryonic head | 4.81e-12 | 6 |
surface structure | 3.58e-10 | 99 |
respiratory system epithelium | 8.22e-10 | 28 |
subdivision of head | 1.70e-08 | 49 |
respiratory system | 7.12e-08 | 74 |
neck | 1.42e-07 | 10 |
endo-epithelium | 4.18e-07 | 82 |
cranial skeletal system | 5.64e-07 | 11 |
lower respiratory tract epithelium | 6.88e-07 | 3 |
epithelium of bronchus | 6.88e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 3.13e-11 | 14 |