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MCL coexpression mm9:158

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:69451220..69451224,+p@chr10:69451220..69451224
+
Mm9::chr10:69456037..69456048,+p@chr10:69456037..69456048
+
Mm9::chr10:80924467..80924478,-p@chr10:80924467..80924478
-
Mm9::chr11:29606996..29607022,+p@chr11:29606996..29607022
+
Mm9::chr11:29607397..29607416,+p@chr11:29607397..29607416
+
Mm9::chr11:36485553..36485556,-p@chr11:36485553..36485556
-
Mm9::chr11:53397396..53397408,+p2@Kif3a
Mm9::chr11:53397464..53397475,+p4@Kif3a
Mm9::chr13:100191678..100191695,-p@chr13:100191678..100191695
-
Mm9::chr13:100192810..100192822,-p@chr13:100192810..100192822
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Mm9::chr13:100192830..100192842,-p@chr13:100192830..100192842
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Mm9::chr13:100195086..100195101,-p@chr13:100195086..100195101
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Mm9::chr13:100195175..100195191,-p@chr13:100195175..100195191
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Mm9::chr13:100195373..100195395,-p@chr13:100195373..100195395
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Mm9::chr13:100195782..100195809,-p@chr13:100195782..100195809
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Mm9::chr13:100195867..100195882,-p@chr13:100195867..100195882
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Mm9::chr13:100197274..100197293,-p@chr13:100197274..100197293
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Mm9::chr13:100200036..100200047,-p@chr13:100200036..100200047
-
Mm9::chr13:100200167..100200197,-p@chr13:100200167..100200197
-
Mm9::chr13:100200258..100200281,-p@chr13:100200258..100200281
-
Mm9::chr13:100200283..100200328,-p@chr13:100200283..100200328
-
Mm9::chr13:100200341..100200353,-p@chr13:100200341..100200353
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Mm9::chr13:100200361..100200372,-p@chr13:100200361..100200372
-
Mm9::chr13:100200413..100200424,-p@chr13:100200413..100200424
-
Mm9::chr13:100200464..100200480,-p@chr13:100200464..100200480
-
Mm9::chr13:100200990..100201008,-p@chr13:100200990..100201008
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Mm9::chr13:100201387..100201398,-p@chr13:100201387..100201398
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Mm9::chr13:100201556..100201570,-p@chr13:100201556..100201570
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Mm9::chr13:100202969..100202982,-p@chr13:100202969..100202982
-
Mm9::chr13:100203199..100203208,-p@chr13:100203199..100203208
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Mm9::chr13:100203414..100203423,-p@chr13:100203414..100203423
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Mm9::chr13:100203454..100203475,-p@chr13:100203454..100203475
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Mm9::chr13:100203551..100203562,-p@chr13:100203551..100203562
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Mm9::chr13:100204050..100204080,-p@chr13:100204050..100204080
-
Mm9::chr13:100204171..100204190,-p@chr13:100204171..100204190
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Mm9::chr13:100204205..100204229,-p@chr13:100204205..100204229
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Mm9::chr13:100204236..100204249,-p@chr13:100204236..100204249
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Mm9::chr13:100204256..100204268,-p@chr13:100204256..100204268
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Mm9::chr13:100204272..100204289,-p@chr13:100204272..100204289
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Mm9::chr13:100204293..100204355,-p@chr13:100204293..100204355
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Mm9::chr13:100204365..100204388,-p@chr13:100204365..100204388
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Mm9::chr13:100204396..100204411,-p@chr13:100204396..100204411
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Mm9::chr13:100204419..100204430,-p@chr13:100204419..100204430
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Mm9::chr13:100204435..100204497,-p@chr13:100204435..100204497
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Mm9::chr13:100204502..100204511,-p@chr13:100204502..100204511
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Mm9::chr13:100204516..100204525,-p@chr13:100204516..100204525
-
Mm9::chr13:100204526..100204558,-p@chr13:100204526..100204558
-
Mm9::chr13:100204563..100204573,-p@chr13:100204563..100204573
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Mm9::chr13:100204591..100204603,-p@chr13:100204591..100204603
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Mm9::chr13:100204609..100204618,-p@chr13:100204609..100204618
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Mm9::chr13:100204847..100204857,-p@chr13:100204847..100204857
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Mm9::chr13:100204910..100204924,-p@chr13:100204910..100204924
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Mm9::chr13:100205091..100205109,-p@chr13:100205091..100205109
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Mm9::chr13:100205218..100205228,-p@chr13:100205218..100205228
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Mm9::chr13:100205349..100205367,-p@chr13:100205349..100205367
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Mm9::chr13:100205403..100205414,-p@chr13:100205403..100205414
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Mm9::chr13:100205486..100205497,-p@chr13:100205486..100205497
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Mm9::chr17:55649560..55649563,+p@chr17:55649560..55649563
+
Mm9::chr18:34407302..34407307,+p6@Apc
Mm9::chr1:66370521..66370559,+p@chr1:66370521..66370559
+
Mm9::chr2:121726924..121726956,+p@chr2:121726924..121726956
+
Mm9::chr2:49556470..49556480,+p@chr2:49556470..49556480
+
Mm9::chr3:126645733..126645745,-p@chr3:126645733..126645745
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Mm9::chr6:103461865..103461888,+p@chr6:103461865..103461888
+
Mm9::chr6:11991374..11991395,+p@chr6:11991374..11991395
+
Mm9::chr7:71898960..71898971,+p@chr7:71898960..71898971
+
Mm9::chr9:21822144..21822178,-p@chr9:21822144..21822178
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Mm9::chr9:75415295..75415309,-p@chr9:75415295..75415309
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Mm9::chrX:147090121..147090139,-p3@Tro


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0000902cell morphogenesis0.000533580777143217
GO:0032989cellular structure morphogenesis0.000533580777143217
GO:0032990cell part morphogenesis0.00222883300916751
GO:0048858cell projection morphogenesis0.00222883300916751
GO:0030030cell projection organization and biogenesis0.00222883300916751
GO:0009953dorsal/ventral pattern formation0.00250566466836571
GO:0008092cytoskeletal protein binding0.0030975165027156
GO:0009653anatomical structure morphogenesis0.00428165185736983
GO:0009952anterior/posterior pattern formation0.00772921188679527
GO:0032502developmental process0.00772921188679527
GO:0005875microtubule associated complex0.00772921188679527
GO:0019987negative regulation of anti-apoptosis0.0101887099841072
GO:0003002regionalization0.0130979757035639
GO:0045767regulation of anti-apoptosis0.0130979757035639
GO:0007017microtubule-based process0.0152185007709145
GO:0048856anatomical structure development0.0152185007709145
GO:0005874microtubule0.0152185007709145
GO:0048523negative regulation of cellular process0.0152185007709145
GO:0045745positive regulation of G-protein coupled receptor protein signaling pathway0.0152185007709145
GO:0031175neurite development0.0152185007709145
GO:0005856cytoskeleton0.0152185007709145
GO:0005523tropomyosin binding0.0152185007709145
GO:0016328lateral plasma membrane0.0152185007709145
GO:0048519negative regulation of biological process0.0152185007709145
GO:0048666neuron development0.0152185007709145
GO:0007275multicellular organismal development0.0152185007709145
GO:0005519cytoskeletal regulatory protein binding0.0152185007709145
GO:0032501multicellular organismal process0.0152185007709145
GO:0007389pattern specification process0.0152185007709145
GO:0030517negative regulation of axon extension0.0162885436067687
GO:0001578microtubule bundle formation0.0170820489591991
GO:0016043cellular component organization and biogenesis0.0170820489591991
GO:0043229intracellular organelle0.0170820489591991
GO:0043226organelle0.0170820489591991
GO:0050771negative regulation of axonogenesis0.0170820489591991
GO:0030182neuron differentiation0.0170820489591991
GO:0015630microtubule cytoskeleton0.0176965260044852
GO:0048699generation of neurons0.019838071825539
GO:0008013beta-catenin binding0.019838071825539
GO:0030308negative regulation of cell growth0.019838071825539
GO:0042384cilium biogenesis0.0203439537211195
GO:0030516regulation of axon extension0.0203439537211195
GO:0022008neurogenesis0.0211170800405944
GO:0009798axis specification0.0235708048326537
GO:0008277regulation of G-protein coupled receptor protein signaling pathway0.0243993736106459
GO:0045792negative regulation of cell size0.0251915549047828
GO:0050768negative regulation of neurogenesis0.0254090532441701
GO:0030176integral to endoplasmic reticulum membrane0.0254090532441701
GO:0048675axon extension0.0280400716874513
GO:0031227intrinsic to endoplasmic reticulum membrane0.0280400716874513
GO:0007270nerve-nerve synaptic transmission0.028681567037318
GO:0045926negative regulation of growth0.0288952341925234
GO:0007010cytoskeleton organization and biogenesis0.0288952341925234
GO:0043232intracellular non-membrane-bound organelle0.0288952341925234
GO:0043228non-membrane-bound organelle0.0288952341925234
GO:0005737cytoplasm0.0309652219385251
GO:0044424intracellular part0.0309652219385251
GO:0050794regulation of cellular process0.0309652219385251
GO:0050770regulation of axonogenesis0.0309652219385251
GO:0007368determination of left/right symmetry0.0337064694612772
GO:0044430cytoskeletal part0.0337064694612772
GO:0009799determination of symmetry0.0337064694612772
GO:0009855determination of bilateral symmetry0.0337064694612772
GO:0048731system development0.0337064694612772
GO:0005622intracellular0.0337064694612772
GO:0016358dendrite development0.0354045852839652
GO:0005871kinesin complex0.0354045852839652
GO:0050789regulation of biological process0.0396347683305164
GO:0050767regulation of neurogenesis0.0396347683305164
GO:0008017microtubule binding0.0399312795533295
GO:0030031cell projection biogenesis0.0405075994997916
GO:0007399nervous system development0.0405075994997916
GO:0031301integral to organelle membrane0.0415970681718946
GO:0030334regulation of cell migration0.042664658739414
GO:0031300intrinsic to organelle membrane0.0439205091015996
GO:0015631tubulin binding0.0439205091015996
GO:0043025cell soma0.0449141803985401
GO:0051270regulation of cell motility0.0458815245142755
GO:0040012regulation of locomotion0.0474634120728747
GO:0065007biological regulation0.0474634120728747
GO:0000226microtubule cytoskeleton organization and biogenesis0.0474634120728747
GO:0003777microtubule motor activity0.0474634120728747
GO:0009967positive regulation of signal transduction0.0474634120728747
GO:0007611learning and/or memory0.0490427659683969
GO:0005789endoplasmic reticulum membrane0.0498775988954077



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
nervous system6.65e-3275
central nervous system8.13e-3273
neurectoderm1.04e-3064
neural plate1.04e-3064
presumptive neural plate1.04e-3064
regional part of nervous system2.08e-2854
ectoderm-derived structure1.75e-2795
ectoderm1.75e-2795
presumptive ectoderm1.75e-2795
neural tube1.60e-2652
neural rod1.60e-2652
future spinal cord1.60e-2652
neural keel1.60e-2652
structure with developmental contribution from neural crest2.17e-2592
pre-chordal neural plate7.77e-2449
ecto-epithelium9.69e-2473
brain1.24e-2247
future brain1.24e-2247
gray matter2.58e-2234
regional part of brain4.81e-2246
anterior neural tube2.35e-2140
regional part of forebrain1.01e-2039
forebrain1.01e-2039
future forebrain1.01e-2039
brain grey matter1.10e-1829
regional part of telencephalon1.10e-1829
telencephalon1.10e-1829
cerebral cortex4.89e-1321
cerebral hemisphere4.89e-1321
pallium4.89e-1321
regional part of cerebral cortex2.13e-1017
occipital lobe1.88e-0910
visual cortex1.88e-0910
neocortex1.88e-0910
tube6.89e-09114
anatomical conduit5.03e-07122
basal ganglion6.91e-078
nuclear complex of neuraxis6.91e-078
aggregate regional part of brain6.91e-078
collection of basal ganglia6.91e-078
cerebral subcortex6.91e-078


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.12.97519e-12
MA0004.10.441617
MA0006.10.0176771
MA0007.10.0375296
MA0009.10.146696
MA0014.11.2145e-10
MA0017.10.140696
MA0019.10.0645494
MA0024.10.123939
MA0025.10.294662
MA0027.11.5868
MA0028.10.117444
MA0029.10.113321
MA0030.10.372307
MA0031.10.0998752
MA0038.10.0318222
MA0040.10.153528
MA0041.10.0189569
MA0042.10.234572
MA0043.10.203004
MA0046.10.166683
MA0048.10.00117255
MA0050.11.54777
MA0051.10.136578
MA0052.10.158003
MA0055.16.56596e-06
MA0056.10
MA0057.10.0127733
MA0058.10.0485457
MA0059.10.245599
MA0060.10.000716859
MA0061.10.584307
MA0063.10
MA0066.10.121134
MA0067.10.377729
MA0068.10.0524955
MA0069.10.478217
MA0070.10.152814
MA0071.10.547001
MA0072.10.14818
MA0073.14.05018e-15
MA0074.10.0220038
MA0076.10.0857009
MA0077.10.136635
MA0078.10.66736
MA0081.10.294591
MA0083.10.202511
MA0084.10.653563
MA0087.10.523136
MA0088.10.00220458
MA0089.10
MA0090.10.00556841
MA0091.10.0490708
MA0092.10.00559092
MA0093.10.12908
MA0095.10
MA0098.10
MA0100.10.0199292
MA0101.10.264042
MA0103.10.430377
MA0105.10.0123576
MA0106.10.0448166
MA0107.10.823476
MA0108.20.0729594
MA0109.10
MA0111.10.0356451
MA0113.10.0371177
MA0114.10.00146654
MA0115.10.204748
MA0116.10.00448519
MA0117.10.185022
MA0119.112.194
MA0122.10.197057
MA0124.10.894982
MA0125.10.77351
MA0130.10
MA0131.10.489255
MA0132.10
MA0133.10
MA0135.10.226158
MA0136.10.795564
MA0139.10.000277496
MA0140.10.0882846
MA0141.10.19095
MA0142.10.643059
MA0143.10.3673
MA0144.12.91993
MA0145.10.00340254
MA0146.17.42518e-12
MA0147.10.0269572
MA0148.10.485531
MA0149.10.00346699
MA0062.20.000430175
MA0035.20.0207358
MA0039.27.39782e-10
MA0138.20.0601936
MA0002.21.43317
MA0137.21.92504
MA0104.20.00244373
MA0047.20.128932
MA0112.20.0495811
MA0065.20.00781621
MA0150.10.228441
MA0151.10
MA0152.10.305216
MA0153.10.237058
MA0154.10.0996113
MA0155.17.01026e-05
MA0156.10.0340626
MA0157.10.274456
MA0158.10
MA0159.10.234303
MA0160.10.0518289
MA0161.10
MA0162.10.000112584
MA0163.12.21698e-09
MA0164.11.15952
MA0080.20.073143
MA0018.20.0280116
MA0099.20.211271
MA0079.20
MA0102.20.700669
MA0258.10.0804071
MA0259.10.596925
MA0442.10
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