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MCL coexpression mm9:2963: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0010314!4.18e-15!92;UBERON:0000468!2.28e-11!333;UBERON:0010371!3.16e-10!73;UBERON:0003056!3.99e-09!49;UBERON:0002346!4.53e-09!64;UBERON:0003075!4.53e-09!64;UBERON:0007284!4.53e-09!64;UBERON:0002020!7.06e-09!34;UBERON:0001049!7.92e-09!52;UBERON:0005068!7.92e-09!52;UBERON:0006241!7.92e-09!52;UBERON:0007135!7.92e-09!52;UBERON:0000073!1.15e-08!54;UBERON:0000922!3.52e-08!320;UBERON:0004111!7.44e-08!122;UBERON:0000025!1.25e-07!114;UBERON:0003080!1.29e-07!40;UBERON:0002021!1.47e-07!10;UBERON:0000411!1.47e-07!10;UBERON:0001950!1.47e-07!10;UBERON:0007100!1.54e-07!18;UBERON:0000948!1.54e-07!18;UBERON:0005498!1.54e-07!18;UBERON:0004140!1.54e-07!18;UBERON:0009881!1.54e-07!18;UBERON:0004141!1.54e-07!18;UBERON:0003084!1.54e-07!18;UBERON:0007005!1.54e-07!18;UBERON:0004139!1.54e-07!18;UBERON:0004291!1.54e-07!18;UBERON:0000955!2.30e-07!47;UBERON:0006238!2.30e-07!47;UBERON:0002780!2.39e-07!39;UBERON:0001890!2.39e-07!39;UBERON:0006240!2.39e-07!39;UBERON:0004121!5.67e-07!95;UBERON:0000924!5.67e-07!95;UBERON:0006601!5.67e-07!95;UBERON:0003103!5.80e-07!43;UBERON:0002616!6.65e-07!46;UBERON:0003528!7.49e-07!29;UBERON:0002791!7.49e-07!29;UBERON:0001893!7.49e-07!29
}}
}}

Revision as of 19:18, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr15:12669625..12669661,-p1@Pdzd2
Mm9::chr15:12669669..12669697,-p3@Pdzd2
Mm9::chr15:12669703..12669716,-p6@Pdzd2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
structure with developmental contribution from neural crest4.18e-1592
multi-cellular organism2.28e-11333
ecto-epithelium3.16e-1073
pre-chordal neural plate3.99e-0949
neurectoderm4.53e-0964
neural plate4.53e-0964
presumptive neural plate4.53e-0964
gray matter7.06e-0934
neural tube7.92e-0952
neural rod7.92e-0952
future spinal cord7.92e-0952
neural keel7.92e-0952
regional part of nervous system1.15e-0854
embryo3.52e-08320
anatomical conduit7.44e-08122
tube1.25e-07114
anterior neural tube1.29e-0740
occipital lobe1.47e-0710
visual cortex1.47e-0710
neocortex1.47e-0710
primary circulatory organ1.54e-0718
heart1.54e-0718
primitive heart tube1.54e-0718
primary heart field1.54e-0718
anterior lateral plate mesoderm1.54e-0718
heart tube1.54e-0718
heart primordium1.54e-0718
cardiac mesoderm1.54e-0718
cardiogenic plate1.54e-0718
heart rudiment1.54e-0718
brain2.30e-0747
future brain2.30e-0747
regional part of forebrain2.39e-0739
forebrain2.39e-0739
future forebrain2.39e-0739
ectoderm-derived structure5.67e-0795
ectoderm5.67e-0795
presumptive ectoderm5.67e-0795
compound organ5.80e-0743
regional part of brain6.65e-0746
brain grey matter7.49e-0729
regional part of telencephalon7.49e-0729
telencephalon7.49e-0729


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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