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MCL coexpression mm9:3659: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000117!9.14e-09!23;CL:0000337!9.14e-09!23
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0010314!1.38e-15!92;UBERON:0004121!1.89e-12!95;UBERON:0000924!1.89e-12!95;UBERON:0006601!1.89e-12!95;UBERON:0010371!2.77e-12!73;UBERON:0002020!6.81e-12!34;UBERON:0000073!7.57e-12!54;UBERON:0001049!1.31e-11!52;UBERON:0005068!1.31e-11!52;UBERON:0006241!1.31e-11!52;UBERON:0007135!1.31e-11!52;UBERON:0001017!4.78e-11!73;UBERON:0002346!5.45e-11!64;UBERON:0003075!5.45e-11!64;UBERON:0007284!5.45e-11!64;UBERON:0001016!1.13e-10!75;UBERON:0003528!1.66e-09!29;UBERON:0002791!1.66e-09!29;UBERON:0001893!1.66e-09!29;UBERON:0004111!2.78e-09!122;UBERON:0000955!3.52e-09!47;UBERON:0006238!3.52e-09!47;UBERON:0002616!4.91e-09!46;UBERON:0000025!4.94e-09!114;UBERON:0003080!5.59e-09!40;UBERON:0003056!1.17e-08!49;UBERON:0002780!1.73e-08!39;UBERON:0001890!1.73e-08!39;UBERON:0006240!1.73e-08!39;UBERON:0007100!6.56e-08!18;UBERON:0000948!6.56e-08!18;UBERON:0005498!6.56e-08!18;UBERON:0004140!6.56e-08!18;UBERON:0009881!6.56e-08!18;UBERON:0004141!6.56e-08!18;UBERON:0003084!6.56e-08!18;UBERON:0007005!6.56e-08!18;UBERON:0004139!6.56e-08!18;UBERON:0004291!6.56e-08!18;UBERON:0000479!7.08e-08!349;UBERON:0000956!9.17e-08!21;UBERON:0001869!9.17e-08!21;UBERON:0000203!9.17e-08!21;UBERON:0003103!7.49e-07!43
}}
}}

Revision as of 20:25, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr8:120807619..120807638,+p2@Cdh13
Mm9::chr8:120807644..120807667,+p3@Cdh13
Mm9::chr8:120807689..120807703,+p1@Cdh13


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)9.14e-0923
neuroblast (sensu Vertebrata)9.14e-0923

Uber Anatomy
Ontology termp-valuen
structure with developmental contribution from neural crest1.38e-1592
ectoderm-derived structure1.89e-1295
ectoderm1.89e-1295
presumptive ectoderm1.89e-1295
ecto-epithelium2.77e-1273
gray matter6.81e-1234
regional part of nervous system7.57e-1254
neural tube1.31e-1152
neural rod1.31e-1152
future spinal cord1.31e-1152
neural keel1.31e-1152
central nervous system4.78e-1173
neurectoderm5.45e-1164
neural plate5.45e-1164
presumptive neural plate5.45e-1164
nervous system1.13e-1075
brain grey matter1.66e-0929
regional part of telencephalon1.66e-0929
telencephalon1.66e-0929
anatomical conduit2.78e-09122
brain3.52e-0947
future brain3.52e-0947
regional part of brain4.91e-0946
tube4.94e-09114
anterior neural tube5.59e-0940
pre-chordal neural plate1.17e-0849
regional part of forebrain1.73e-0839
forebrain1.73e-0839
future forebrain1.73e-0839
primary circulatory organ6.56e-0818
heart6.56e-0818
primitive heart tube6.56e-0818
primary heart field6.56e-0818
anterior lateral plate mesoderm6.56e-0818
heart tube6.56e-0818
heart primordium6.56e-0818
cardiac mesoderm6.56e-0818
cardiogenic plate6.56e-0818
heart rudiment6.56e-0818
tissue7.08e-08349
cerebral cortex9.17e-0821
cerebral hemisphere9.17e-0821
pallium9.17e-0821
compound organ7.49e-0743


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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