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MCL coexpression mm9:536: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0003528!9.69e-31!29;UBERON:0002791!9.69e-31!29;UBERON:0001893!9.69e-31!29;UBERON:0003080!1.73e-25!40;UBERON:0002020!6.32e-25!34;UBERON:0002780!9.27e-25!39;UBERON:0001890!9.27e-25!39;UBERON:0006240!9.27e-25!39;UBERON:0000956!5.25e-23!21;UBERON:0001869!5.25e-23!21;UBERON:0000203!5.25e-23!21;UBERON:0000955!3.19e-22!47;UBERON:0006238!3.19e-22!47;UBERON:0002616!6.34e-21!46;UBERON:0003056!4.53e-19!49;UBERON:0002619!7.81e-18!17;UBERON:0000073!1.21e-17!54;UBERON:0001049!1.95e-17!52;UBERON:0005068!1.95e-17!52;UBERON:0006241!1.95e-17!52;UBERON:0007135!1.95e-17!52;UBERON:0002021!1.13e-13!10;UBERON:0000411!1.13e-13!10;UBERON:0001950!1.13e-13!10;UBERON:0002346!1.76e-12!64;UBERON:0003075!1.76e-12!64;UBERON:0007284!1.76e-12!64;UBERON:0001017!7.96e-12!73;UBERON:0001016!2.89e-11!75;UBERON:0010371!6.94e-10!73;UBERON:0002420!1.05e-08!8;UBERON:0007245!1.05e-08!8;UBERON:0010009!1.05e-08!8;UBERON:0010011!1.05e-08!8;UBERON:0000454!1.05e-08!8;UBERON:0000369!3.94e-08!5;UBERON:0002435!3.94e-08!5;UBERON:0000204!3.94e-08!5;UBERON:0010082!3.94e-08!5;UBERON:0004121!4.61e-07!95;UBERON:0000924!4.61e-07!95;UBERON:0006601!4.61e-07!95
|ontology_enrichment_uberon=UBERON:0003528!9.69e-31!29;UBERON:0002791!9.69e-31!29;UBERON:0001893!9.69e-31!29;UBERON:0003080!1.73e-25!40;UBERON:0002020!6.32e-25!34;UBERON:0002780!9.27e-25!39;UBERON:0001890!9.27e-25!39;UBERON:0006240!9.27e-25!39;UBERON:0000956!5.25e-23!21;UBERON:0001869!5.25e-23!21;UBERON:0000203!5.25e-23!21;UBERON:0000955!3.19e-22!47;UBERON:0006238!3.19e-22!47;UBERON:0002616!6.34e-21!46;UBERON:0003056!4.53e-19!49;UBERON:0002619!7.81e-18!17;UBERON:0000073!1.21e-17!54;UBERON:0001049!1.95e-17!52;UBERON:0005068!1.95e-17!52;UBERON:0006241!1.95e-17!52;UBERON:0007135!1.95e-17!52;UBERON:0002021!1.13e-13!10;UBERON:0000411!1.13e-13!10;UBERON:0001950!1.13e-13!10;UBERON:0002346!1.76e-12!64;UBERON:0003075!1.76e-12!64;UBERON:0007284!1.76e-12!64;UBERON:0001017!7.96e-12!73;UBERON:0001016!2.89e-11!75;UBERON:0010371!6.94e-10!73;UBERON:0002420!1.05e-08!8;UBERON:0007245!1.05e-08!8;UBERON:0010009!1.05e-08!8;UBERON:0010011!1.05e-08!8;UBERON:0000454!1.05e-08!8;UBERON:0000369!3.94e-08!5;UBERON:0002435!3.94e-08!5;UBERON:0000204!3.94e-08!5;UBERON:0010082!3.94e-08!5;UBERON:0004121!4.61e-07!95;UBERON:0000924!4.61e-07!95;UBERON:0006601!4.61e-07!95
|tfbs_overrepresentation_for_novel_motifs=0.6379,0.153651,1.11498,1.32019,0.781942,0.269875,0.915684,0.0669598,0.0719629,0.415336,0.831817,0.336042,0.237599,0.357027,0.419678,0,0.530547,0.118546,0.215337,0.24668,0.176628,0.329508,0.356242,0.77745,0.210021,0.381085,0.0554034,0.287195,0.154744,0.145734,0.275529,0.624931,0.117091,0.176308,0.832139,0.425764,0.358314,0.332941,0.662669,0.276416,0.384293,0.76591,0.295897,0.423138,0.0379861,0.24907,0.457618,0.812613,0.647158,0.156829,0.514446,0.404841,0.321327,0.759566,0.776306,0.363247,0.163199,0.325117,0.190698,0.949048,0.606104,0.413233,0.0784106,0.504093,0.372973,0.541429,0.908031,1.25063,0.60172,1.10561,1.05857,0.0700673,0.587721,0.808562,0.181606,0.166516,0.702638,0.447339,0.590017,0.531085,0.0707051,0.546623,0.411949,0.493111,0.69807,0.250675,0.0697055,0.611818,0.462057,1.41118,0.975915,0.702809,1.5387,0.401201,1.59997,0.0848579,0.503836,0.639644,0.457849,0.119684,0.111186,0.624668,0.742871,0.514993,0.514023,0.279432,0.569344,0.296997,1.63251,0.177945,0.62491,0.744577,0.180573,0.313258,0.982794,0.381263,0.00519761,0.26114,0.53175,0.714691,0.813766,0.484912,0.382687,1.13466,1.03573,0.593478,3.45213,0.630607,0.906557,0.406303,0.726634,0.252176,2.03667,0.375176,1.0039,0.162091,1.89481,0.768569,0.955897,1.77738,1.3796,0.91261,1.01903,0.634793,0.508066,0.280171,0.460443,1.73788,0.232952,0.124893,0.3445,0.144255,0.761071,0.0882878,0.374365,0.839715,1.04618,0.143092,0.633366,0.230865,0.96517,0.697256,0.593895,0.21719,0.50503,0.963204,0.110426,0.33468,0.00671205
}}
}}

Revision as of 18:31, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr12:120085679..120085690,+p3@Sp8
Mm9::chr2:70399315..70399325,+p@chr2:70399315..70399325
+
Mm9::chr2:71367142..71367167,+p2@Dlx1
Mm9::chr3:34003370..34003397,+p2@ENSMUST00000173845
Mm9::chr3:34003403..34003418,+p1@ENSMUST00000173845
Mm9::chr6:6768025..6768029,-p@chr6:6768025..6768029
-
Mm9::chr6:6811642..6811655,-p5@Dlx6as1
Mm9::chr6:6811678..6811685,-p2@Dlx6as1
Mm9::chr6:6811737..6811740,-p7@Dlx6as1
Mm9::chr6:6819365..6819368,-p4@Dlx6as1
Mm9::chr6:6819489..6819503,-p3@Dlx6as1
Mm9::chr6:6819517..6819539,-p1@Dlx6as1
Mm9::chr6:6821533..6821538,-p@chr6:6821533..6821538
-
Mm9::chr6:6821588..6821589,-p@chr6:6821588..6821589
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
neuron of cerebral cortex1.47e-096
CNS neuron (sensu Vertebrata)9.02e-0723
neuroblast (sensu Vertebrata)9.02e-0723

Uber Anatomy
Ontology termp-valuen
brain grey matter9.69e-3129
regional part of telencephalon9.69e-3129
telencephalon9.69e-3129
anterior neural tube1.73e-2540
gray matter6.32e-2534
regional part of forebrain9.27e-2539
forebrain9.27e-2539
future forebrain9.27e-2539
cerebral cortex5.25e-2321
cerebral hemisphere5.25e-2321
pallium5.25e-2321
brain3.19e-2247
future brain3.19e-2247
regional part of brain6.34e-2146
pre-chordal neural plate4.53e-1949
regional part of cerebral cortex7.81e-1817
regional part of nervous system1.21e-1754
neural tube1.95e-1752
neural rod1.95e-1752
future spinal cord1.95e-1752
neural keel1.95e-1752
occipital lobe1.13e-1310
visual cortex1.13e-1310
neocortex1.13e-1310
neurectoderm1.76e-1264
neural plate1.76e-1264
presumptive neural plate1.76e-1264
central nervous system7.96e-1273
nervous system2.89e-1175
ecto-epithelium6.94e-1073
basal ganglion1.05e-088
nuclear complex of neuraxis1.05e-088
aggregate regional part of brain1.05e-088
collection of basal ganglia1.05e-088
cerebral subcortex1.05e-088
corpus striatum3.94e-085
striatum3.94e-085
ventral part of telencephalon3.94e-085
future corpus striatum3.94e-085
ectoderm-derived structure4.61e-0795
ectoderm4.61e-0795
presumptive ectoderm4.61e-0795


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}