FFCP PHASE1:Hg19::chr19:37264033..37264070,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000500464,uc002oes.1_5end|description=CAGE_peak_1_at_ENST00000500464_5end,CAGE_peak_1_at_uc002oes.1_5end|id=chr19:37264033..37264070,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002322;4.93e-09;5!CL:0000039;2.46e-07;7!CL:0000586;2.46e-07;7!CL:0002321;2.99e-07;15|ontology_enrichment_celltype_v019_2=CL:0002322,5.12e-09,5;CL:0000039,2.38e-07,7;CL:0000586,2.38e-07,7|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:3095!5.68e-08!22;DOID:2994!5.68e-08!22;DOID:1240!2.93e-07!39|ontology_enrichment_disease_v019=DOID:3095;9.54e-12;22!DOID:2994;9.54e-12;22!DOID:1240;6.16e-08;39!DOID:8692;2.44e-07;31|ontology_enrichment_disease_v019_2=DOID:3095,1.09e-11,22;DOID:2994,1.09e-11,22;DOID:1240,4.52e-10,39;DOID:2531,3.56e-09,51;DOID:0060083,3.56e-09,51;DOID:8692,1.54e-07,31;DOID:14566,4.25e-07,239;DOID:162,8.84e-07,235|ontology_enrichment_uberon=UBERON:0000073!1.04e-21!94;UBERON:0001016!1.04e-21!94;UBERON:0005743!1.96e-19!86;UBERON:0001017!2.22e-18!82;UBERON:0001049!4.64e-17!57;UBERON:0005068!4.64e-17!57;UBERON:0006241!4.64e-17!57;UBERON:0007135!4.64e-17!57;UBERON:0002346!1.09e-14!90;UBERON:0002616!2.10e-14!59;UBERON:0000955!2.13e-14!69;UBERON:0006238!2.13e-14!69;UBERON:0003075!6.98e-14!86;UBERON:0007284!6.98e-14!86;UBERON:0002780!1.22e-13!41;UBERON:0001890!1.22e-13!41;UBERON:0006240!1.22e-13!41;UBERON:0003080!5.88e-13!42;UBERON:0000924!1.24e-12!173;UBERON:0006601!1.24e-12!173;UBERON:0004121!6.60e-12!169;UBERON:0003056!3.77e-11!61;UBERON:0001893!7.52e-10!34;UBERON:0002020!7.69e-10!34;UBERON:0003528!7.69e-10!34;UBERON:0002791!1.88e-09!33;UBERON:0001869!2.85e-09!32;UBERON:0000153!3.13e-08!129;UBERON:0007811!3.13e-08!129;UBERON:0002619!8.38e-08!22;UBERON:0000033!1.18e-07!123;UBERON:0007023!1.61e-07!115;UBERON:0001950!2.41e-07!20|ontology_enrichment_uberon_v019=UBERON:0002780;1.02e-11;41!UBERON:0001890;1.02e-11;41!UBERON:0001869;1.62e-10;32!UBERON:0000073;2.15e-10;53!UBERON:0002616;2.15e-10;53!UBERON:0003528;3.89e-10;34!UBERON:0002020;3.89e-10;34!UBERON:0001893;4.94e-10;34!UBERON:0001950;4.99e-10;20!UBERON:0002791;1.43e-09;32!UBERON:0001894;4.13e-09;7!UBERON:0002619;7.88e-09;22!UBERON:0000955;1.48e-07;68!UBERON:0000956;2.15e-07;25!UBERON:0000203;2.15e-07;25!UBERON:0001016;4.20e-07;83!UBERON:0000369;8.34e-07;4!UBERON:0002435;8.34e-07;4!UBERON:0000204;8.34e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0001016,9.16e-20,89;UBERON:0000073,1.12e-17,53;UBERON:0002616,1.12e-17,53;UBERON:0002780,2.75e-17,41;UBERON:0001890,2.75e-17,41;UBERON:0003080,2.75e-17,41;UBERON:0006240,2.75e-17,41;UBERON:0001017,2.04e-16,81;UBERON:0001049,3.15e-16,56;UBERON:0005068,3.15e-16,56;UBERON:0006241,3.15e-16,56;UBERON:0007135,3.15e-16,56;UBERON:0000955,2.03e-13,68;UBERON:0006238,2.03e-13,68;UBERON:0001869,5.50e-12,32;UBERON:0003528,4.52e-11,34;UBERON:0002020,4.52e-11,34;UBERON:0001893,5.69e-11,34;UBERON:0003056,5.91e-11,61;UBERON:0002791,8.64e-11,32;UBERON:0002346,1.50e-10,86;UBERON:0001950,3.79e-10,20;UBERON:0003075,8.49e-10,82;UBERON:0007284,8.49e-10,82;UBERON:0001894,1.64e-09,7;UBERON:0006222,1.64e-09,7;UBERON:0004121,5.84e-09,171;UBERON:0000924,5.84e-09,171;UBERON:0006601,5.84e-09,171;UBERON:0002619,6.16e-09,22;UBERON:0000956,1.74e-07,25;UBERON:0000203,1.74e-07,25;UBERON:0010371,3.03e-07,104|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,1.31064823278103,0.527533956456907,0.123766352960047,0,0,0,0,0,0.123121058076788,0,0.626909442956176,0,0,0,0.382067028739756,0.492603536699674,0.629686250509434,0,0,0.309632246632152,0.919421224478927,0,0,3.79589282843478,0,1.76160263600908,0,0.200544447470142,0,0,0,0.515151135268373,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0.320929027076094,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0.546138611262131,1.77901850772711,1.28019066769952,1.20118796110804,1.14950487990897,1.98313461835459,0,0.569212969109448,0,0.382273228125229,0,0,5.00429761072646,0.196709770113833,0,0.205601498999509,1.17030546773475,0.651844533267181,0.473447805734733,0,0.334231370655521,0.589211814949674,0.443067789167242,0.270803863765016,0.512365278902701,0.650296737799391,0.164437904603676,0.276350017785848,1.44901542867526,0.593146252648242,0.267540828089713,0,1.47302145506836,0,0.34362744548263,0.759059076058509,1.91139248594458,1.30216690771284,0.950452044448374,0.752875595388864,0.255973222308837,1.24930726552346,0.947109008176067,0.821127996921047,0,0,0.144824403882799,0,0,0,0,0,0,0,0.973269740605272,0.567208902984407,0,0.175669571386252,0.851363990735132,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0.17859945656816,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0.134710672069688,0,0,0,0.70296429550139,0,0,0,0,0.161872944368132,0.140450806702248,0,0,0.309977343527296,0,0.247266929278557,0,0,0.168336113954066,0,0,0,0,0,0.226864366320042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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000500464,uc002oes.1_5end | |||
|description=CAGE_peak_1_at_ENST00000500464_5end,CAGE_peak_1_at_uc002oes.1_5end | |||
|id=chr19:37264033..37264070,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002322;4.93e-09;5!CL:0000039;2.46e-07;7!CL:0000586;2.46e-07;7!CL:0002321;2.99e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,5.12e-09,5;CL:0000039,2.38e-07,7;CL:0000586,2.38e-07,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3095!5.68e-08!22;DOID:2994!5.68e-08!22;DOID:1240!2.93e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:3095;9.54e-12;22!DOID:2994;9.54e-12;22!DOID:1240;6.16e-08;39!DOID:8692;2.44e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.09e-11,22;DOID:2994,1.09e-11,22;DOID:1240,4.52e-10,39;DOID:2531,3.56e-09,51;DOID:0060083,3.56e-09,51;DOID:8692,1.54e-07,31;DOID:14566,4.25e-07,239;DOID:162,8.84e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.04e-21!94;UBERON:0001016!1.04e-21!94;UBERON:0005743!1.96e-19!86;UBERON:0001017!2.22e-18!82;UBERON:0001049!4.64e-17!57;UBERON:0005068!4.64e-17!57;UBERON:0006241!4.64e-17!57;UBERON:0007135!4.64e-17!57;UBERON:0002346!1.09e-14!90;UBERON:0002616!2.10e-14!59;UBERON:0000955!2.13e-14!69;UBERON:0006238!2.13e-14!69;UBERON:0003075!6.98e-14!86;UBERON:0007284!6.98e-14!86;UBERON:0002780!1.22e-13!41;UBERON:0001890!1.22e-13!41;UBERON:0006240!1.22e-13!41;UBERON:0003080!5.88e-13!42;UBERON:0000924!1.24e-12!173;UBERON:0006601!1.24e-12!173;UBERON:0004121!6.60e-12!169;UBERON:0003056!3.77e-11!61;UBERON:0001893!7.52e-10!34;UBERON:0002020!7.69e-10!34;UBERON:0003528!7.69e-10!34;UBERON:0002791!1.88e-09!33;UBERON:0001869!2.85e-09!32;UBERON:0000153!3.13e-08!129;UBERON:0007811!3.13e-08!129;UBERON:0002619!8.38e-08!22;UBERON:0000033!1.18e-07!123;UBERON:0007023!1.61e-07!115;UBERON:0001950!2.41e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.02e-11;41!UBERON:0001890;1.02e-11;41!UBERON:0001869;1.62e-10;32!UBERON:0000073;2.15e-10;53!UBERON:0002616;2.15e-10;53!UBERON:0003528;3.89e-10;34!UBERON:0002020;3.89e-10;34!UBERON:0001893;4.94e-10;34!UBERON:0001950;4.99e-10;20!UBERON:0002791;1.43e-09;32!UBERON:0001894;4.13e-09;7!UBERON:0002619;7.88e-09;22!UBERON:0000955;1.48e-07;68!UBERON:0000956;2.15e-07;25!UBERON:0000203;2.15e-07;25!UBERON:0001016;4.20e-07;83!UBERON:0000369;8.34e-07;4!UBERON:0002435;8.34e-07;4!UBERON:0000204;8.34e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,9.16e-20,89;UBERON:0000073,1.12e-17,53;UBERON:0002616,1.12e-17,53;UBERON:0002780,2.75e-17,41;UBERON:0001890,2.75e-17,41;UBERON:0003080,2.75e-17,41;UBERON:0006240,2.75e-17,41;UBERON:0001017,2.04e-16,81;UBERON:0001049,3.15e-16,56;UBERON:0005068,3.15e-16,56;UBERON:0006241,3.15e-16,56;UBERON:0007135,3.15e-16,56;UBERON:0000955,2.03e-13,68;UBERON:0006238,2.03e-13,68;UBERON:0001869,5.50e-12,32;UBERON:0003528,4.52e-11,34;UBERON:0002020,4.52e-11,34;UBERON:0001893,5.69e-11,34;UBERON:0003056,5.91e-11,61;UBERON:0002791,8.64e-11,32;UBERON:0002346,1.50e-10,86;UBERON:0001950,3.79e-10,20;UBERON:0003075,8.49e-10,82;UBERON:0007284,8.49e-10,82;UBERON:0001894,1.64e-09,7;UBERON:0006222,1.64e-09,7;UBERON:0004121,5.84e-09,171;UBERON:0000924,5.84e-09,171;UBERON:0006601,5.84e-09,171;UBERON:0002619,6.16e-09,22;UBERON:0000956,1.74e-07,25;UBERON:0000203,1.74e-07,25;UBERON:0010371,3.03e-07,104 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,1.31064823278103,0.527533956456907,0.123766352960047,0,0,0,0,0,0.123121058076788,0,0.626909442956176,0,0,0,0.382067028739756,0.492603536699674,0.629686250509434,0,0,0.309632246632152,0.919421224478927,0,0,3.79589282843478,0,1.76160263600908,0,0.200544447470142,0,0,0,0.515151135268373,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0.320929027076094,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0.546138611262131,1.77901850772711,1.28019066769952,1.20118796110804,1.14950487990897,1.98313461835459,0,0.569212969109448,0,0.382273228125229,0,0,5.00429761072646,0.196709770113833,0,0.205601498999509,1.17030546773475,0.651844533267181,0.473447805734733,0,0.334231370655521,0.589211814949674,0.443067789167242,0.270803863765016,0.512365278902701,0.650296737799391,0.164437904603676,0.276350017785848,1.44901542867526,0.593146252648242,0.267540828089713,0,1.47302145506836,0,0.34362744548263,0.759059076058509,1.91139248594458,1.30216690771284,0.950452044448374,0.752875595388864,0.255973222308837,1.24930726552346,0.947109008176067,0.821127996921047,0,0,0.144824403882799,0,0,0,0,0,0,0,0.973269740605272,0.567208902984407,0,0.175669571386252,0.851363990735132,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0.17859945656816,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0.134710672069688,0,0,0,0.70296429550139,0,0,0,0,0.161872944368132,0.140450806702248,0,0,0.309977343527296,0,0.247266929278557,0,0,0.168336113954066,0,0,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0.168776332241266,0.194874010322397,0,0,0.161646056818812,0,0,0,0.193260853163297,0.272746120590835,0,10.245791314886,11.2650303073262,7.43641234364918,4.76840853070704,5.55105871926382,1.45990943630332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.09024169590255,0,0,0.329250856225877,0,0,1.11106134190236,0,0,0,0.695582429850461,1.05667824812239,0,0,0,0,0,0,0,0,0,0.335964256397719,0.283550194484773,0.179117045405697,0,0,0,0.088048434013226,1.03664057770386,0.288239906833923,0.75745460055828,0.380987365753014,0.381988425558278,1.17217447210047,0,0.308482478109971,0.901029173531752,0,0.112131084345361,0,0.1466765716419,0.129271715757778,0,0.845302752556,0.26593811658487,0,0.257207374262142,0,0,0.142977993658148,0.542621605391443,0.823240336780769,0,0,0,0.904318131178758,0,0.299918973546171,0,0,0,0,0,0,0.144781306667579,0,0.179060963239896,0.224170287987055,0.197030760201927,0,0,0,1.30139853857622,1.54657762555539,2.34522771468088,0.637938751653163,0,0,0,0,0.500170521059677,0,0,0,0,0.117141414992713,0,0,0,0,0.553107505625109,0,0.391602314925481,0.343143423810856,0,0,0,1.81876542867756,0,2.11673205330776,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0.116210378459959,1.32945394550784,0,0.0920809889358963,0,0,0,0,0.231046011313244,0,0,0.422206515571503,0,0,0.215915916102139,0,0.541892875087706,0,0.509752546090077,0,0.671624264166535,0.219259876645935,0,0.769350375349168,0.328014645699706,0.976135183992909,0.206082023295445,0.27470839445503,0.495056999523528,0.574265537996172,0.650060246036521,0,0.096670718292122,0,0,0,0.322260734604821,0.145016693914229,0,0,0.165284915360978,0.384380134730212,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0,0,0.372158369359667,0,0.190630193923825,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0.349934720244983,0.48111056362756,0,0,0.470719003883896,1.29151611801369,0,0.443430153536676,0.459446800413919,0,0,0.569647187174163,0.476463550915578,0,0,0.540031437238115,0,0.534120355637366,2.88743956579008,0.245040215981032,3.71606350251437,0,4.97992903438899,1.4348364545594,4.98948428582042,4.21311814291207,4.86849240264931,0,3.65036331547496,0.228234679033192,3.76031749855256,0,2.87796022262726,0.1605880751037,0.80719882876419,0,0,0.921722292925374,0.671028323677248,0.333698283423817,0.976940477010201,0,3.69262196843137,4.8682022125677,2.99764771198038,7.04935025439248,0,0,0.728163130497081,1.67165076416218,1.70481688083848,0.71623345421307,1.48482340416319,1.22864280839693,0,1.82870241333667,0,0,0.422250816255987,0,0.552567831062295,0,0.613612095012929,0.861593638227486,0,0,0,1.53471711068062,0,0,0,0.969332746095218,1.20598527610407,0,0,0,0,0,2.54253650292766,0,1.37897349296586,4.66567381413207,1.90987494426621,3.54296554325536,3.13550740426061,4.5774520895125,1.3269511191747,1.77328571372128,1.09692698576986,0,0,0.0769502585037971,0.227884111694002,1.61394733071642,3.59030577639089,0.54323685961004,1.91400695839152,0.366390373607449,1.5991043280559,0,2.5116841023204,2.32696354660219,0,0,0,0,2.70192184266644,0,0.326465616318295,0,1.29833183845255,0,0.0884575645033392,0,0.296521128680622,0.370691816839509,0.417687798021821,0.876214728748802,0,1.63985112007737,0.182454789215666,0,0.728341138602278,0,0,1.22429104652196,0.063186579628488,4.66002600184927,3.21433393331466,0,0,0.313932918407225,1.19472429772959,13.9458677554598,0,0,0,0,0,1.89184635718778,0,0,0,0,2.38291542067051,0.90392296312213,0.54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| |||
|short_description=p1@ENST00000500464,p1@uc002oes.1 | |||
}} |
Revision as of 20:21, 11 September 2013
Short description: | p1@ENST00000500464, p1@uc002oes.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENST00000500464_5end, CAGE_peak_1_at_uc002oes.1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000500464, uc002oes.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 5.12e-09 | 5 |
germ line cell | 2.38e-07 | 7 |
germ cell | 2.38e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
nervous system | 9.16e-20 | 89 |
regional part of nervous system | 1.12e-17 | 53 |
regional part of brain | 1.12e-17 | 53 |
regional part of forebrain | 2.75e-17 | 41 |
forebrain | 2.75e-17 | 41 |
anterior neural tube | 2.75e-17 | 41 |
future forebrain | 2.75e-17 | 41 |
central nervous system | 2.04e-16 | 81 |
neural tube | 3.15e-16 | 56 |
neural rod | 3.15e-16 | 56 |
future spinal cord | 3.15e-16 | 56 |
neural keel | 3.15e-16 | 56 |
brain | 2.03e-13 | 68 |
future brain | 2.03e-13 | 68 |
cerebral hemisphere | 5.50e-12 | 32 |
brain grey matter | 4.52e-11 | 34 |
gray matter | 4.52e-11 | 34 |
telencephalon | 5.69e-11 | 34 |
pre-chordal neural plate | 5.91e-11 | 61 |
regional part of telencephalon | 8.64e-11 | 32 |
neurectoderm | 1.50e-10 | 86 |
neocortex | 3.79e-10 | 20 |
neural plate | 8.49e-10 | 82 |
presumptive neural plate | 8.49e-10 | 82 |
diencephalon | 1.64e-09 | 7 |
future diencephalon | 1.64e-09 | 7 |
ectoderm-derived structure | 5.84e-09 | 171 |
ectoderm | 5.84e-09 | 171 |
presumptive ectoderm | 5.84e-09 | 171 |
regional part of cerebral cortex | 6.16e-09 | 22 |
cerebral cortex | 1.74e-07 | 25 |
pallium | 1.74e-07 | 25 |
ecto-epithelium | 3.03e-07 | 104 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.09e-11 | 22 |
germ cell cancer | 1.09e-11 | 22 |
leukemia | 4.52e-10 | 39 |
hematologic cancer | 3.56e-09 | 51 |
immune system cancer | 3.56e-09 | 51 |
myeloid leukemia | 1.54e-07 | 31 |
disease of cellular proliferation | 4.25e-07 | 239 |
cancer | 8.84e-07 | 235 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.